Wall clock time and date at job start Tue Mar 31 2020 14:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34781 * 116.99931 * 2 1 4 4 O 1.21551 * 120.00326 * 359.97438 * 3 2 1 5 5 C 1.47179 * 120.00073 * 179.97438 * 3 2 1 6 6 C 1.36502 * 126.24614 * 180.27589 * 5 3 2 7 7 N 1.35324 * 106.86503 * 180.09980 * 6 5 3 8 8 C 1.46502 * 126.12801 * 179.90827 * 7 6 5 9 9 C 1.50692 * 109.47212 * 264.68972 * 8 7 6 10 10 C 1.38636 * 119.74883 * 90.00023 * 9 8 7 11 11 C 1.37620 * 120.25102 * 179.97438 * 10 9 8 12 12 C 1.40717 * 119.74444 * 0.27063 * 11 10 9 13 13 C 1.41397 * 120.24553 * 179.70220 * 12 11 10 14 14 H 1.07997 * 119.99566 * 24.28741 * 13 12 11 15 15 C 1.39947 * 119.99746 * 204.28899 * 13 12 11 16 16 N 1.30821 * 120.00278 * 17.73983 * 15 13 12 17 17 Si 1.86794 * 119.99656 * 197.73280 * 15 13 12 18 18 H 1.48496 * 109.47373 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47179 * 120.00490 * 17 15 13 20 20 H 1.48503 * 109.47456 * 240.00064 * 17 15 13 21 21 C 1.40722 * 119.50957 * 359.47998 * 12 11 10 22 22 C 1.37612 * 119.74268 * 0.49927 * 21 12 11 23 23 C 1.35865 * 107.74852 * 359.64649 * 7 6 5 24 24 C 1.50702 * 125.49367 * 180.26253 * 23 7 6 25 25 C 1.53001 * 117.50044 * 188.62259 * 24 23 7 26 26 C 1.52998 * 117.49846 * 119.99805 * 24 23 7 27 27 N 1.30154 * 109.01712 * 0.22269 * 23 7 6 28 28 H 1.09004 * 109.47093 * 60.00306 * 1 2 3 29 29 H 1.08997 * 109.47357 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47742 * 300.00309 * 1 2 3 31 31 H 1.08005 * 126.57059 * 359.97438 * 6 5 3 32 32 H 1.09005 * 109.46938 * 144.69043 * 8 7 6 33 33 H 1.08998 * 109.46999 * 24.69289 * 8 7 6 34 34 H 1.08001 * 119.87890 * 359.95339 * 10 9 8 35 35 H 1.08002 * 120.12811 * 180.02562 * 11 10 9 36 36 H 0.96999 * 120.00115 * 179.97438 * 16 15 13 37 37 H 1.07995 * 120.12623 * 180.25111 * 21 12 11 38 38 H 1.08003 * 119.87601 * 179.75109 * 22 21 12 39 39 H 1.08999 * 115.55015 * 334.32749 * 24 23 7 40 40 H 1.09001 * 117.49642 * 359.97438 * 25 24 23 41 41 H 1.08992 * 117.50051 * 145.01689 * 25 24 23 42 42 H 1.09003 * 117.49982 * 214.97678 * 26 24 23 43 43 H 1.08998 * 117.50031 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2204 -0.0005 5 6 3.5336 1.2780 0.0006 6 6 4.2820 2.4196 0.0059 7 7 5.5803 2.0380 0.0021 8 6 6.7427 2.9297 0.0037 9 6 7.2188 3.1368 -1.4110 10 6 6.7065 4.1827 -2.1631 11 6 7.1343 4.3817 -3.4558 12 6 8.0914 3.5152 -4.0157 13 6 8.5338 3.7061 -5.3450 14 1 8.4688 4.6831 -5.8006 15 6 9.0558 2.6290 -6.0702 16 7 8.8260 1.4027 -5.6766 17 14 10.0805 2.9423 -7.6002 18 1 10.1930 4.4051 -7.8297 19 1 11.4361 2.3651 -7.4148 20 1 9.4277 2.3057 -8.7723 21 6 8.6083 2.4601 -3.2412 22 6 8.1662 2.2804 -1.9505 23 6 5.6128 0.6797 0.0025 24 6 6.8603 -0.1657 0.0046 25 6 6.6928 -1.6728 -0.1987 26 6 7.0627 -1.1234 1.1805 27 7 4.3928 0.2263 0.0016 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9093 3.4333 0.0102 32 1 7.5425 2.4830 0.5945 33 1 6.4634 3.8899 0.4373 34 1 5.9685 4.8437 -1.7330 35 1 6.7342 5.1974 -4.0398 36 1 9.1876 0.6562 -6.1794 37 1 9.3462 1.7917 -3.6595 38 1 8.5586 1.4689 -1.3555 39 1 7.7474 0.3042 -0.4202 40 1 5.6801 -2.0529 -0.3336 41 1 7.4695 -2.1947 -0.7575 42 1 8.0829 -1.2839 1.5291 43 1 6.2937 -1.1417 1.9528 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784057239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:56 Heat of formation + Delta-G solvation = 2.017129 kcal Electronic energy + Delta-G solvation = -26812.176860 eV Core-core repulsion = 23016.315515 eV Total energy + Delta-G solvation = -3795.861345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.34891 -41.13038 -39.52160 -37.91801 -37.43333 -36.25756 -34.86140 -32.01703 -31.25718 -30.91342 -29.14847 -28.32147 -25.87284 -25.38347 -23.64985 -23.20335 -22.96685 -22.09303 -21.43434 -20.44855 -19.28615 -19.00279 -18.06911 -17.53463 -17.26946 -16.94841 -16.77219 -16.46493 -15.85704 -15.54456 -15.41339 -15.28528 -14.75040 -14.58381 -14.40382 -14.14541 -13.92346 -13.57438 -13.37413 -13.08431 -12.93075 -12.80933 -12.76230 -12.58411 -12.33639 -12.24234 -11.89093 -11.80451 -11.75778 -11.60911 -11.49200 -11.24163 -11.22922 -11.04728 -10.69951 -9.47226 -9.42084 -9.32752 -8.70765 -6.41377 0.28551 0.74451 1.10935 1.17204 1.36219 1.39830 1.51052 1.62972 2.00568 2.17237 2.21488 2.68603 2.97267 3.24580 3.53929 3.73223 3.79538 3.93065 4.04317 4.08678 4.17441 4.19290 4.29581 4.33066 4.36481 4.47518 4.53711 4.56406 4.67852 4.82093 4.90393 5.01494 5.06104 5.10626 5.15072 5.23318 5.31761 5.33555 5.40164 5.43976 5.64472 5.87215 6.01508 6.05071 6.11437 6.33154 6.56938 6.64412 6.88106 6.92806 6.96600 8.25543 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.003243 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.987818 B = 8631.741696 C = 9189.560001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.560 3.440 4 O -0.536 6.536 5 C -0.095 4.095 6 C 0.059 3.941 7 N -0.429 5.429 8 C 0.164 3.836 9 C -0.241 4.241 10 C -0.068 4.068 11 C -0.250 4.250 12 C 0.087 3.913 13 C -0.496 4.496 14 H 0.074 0.926 15 C 0.037 3.963 16 N -0.817 5.817 17 Si 0.981 3.019 18 H -0.259 1.259 19 H -0.261 1.261 20 H -0.268 1.268 21 C -0.193 4.193 22 C -0.077 4.077 23 C 0.246 3.754 24 C -0.111 4.111 25 C -0.154 4.154 26 C -0.133 4.133 27 N -0.474 5.474 28 H 0.062 0.938 29 H 0.132 0.868 30 H 0.068 0.932 31 H 0.209 0.791 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.290 0.710 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.129 0.871 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 -3.825 12.360 13.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.406 3.594 4 O -0.427 6.427 5 C -0.221 4.221 6 C -0.084 4.084 7 N -0.107 5.107 8 C 0.045 3.955 9 C -0.243 4.243 10 C -0.087 4.087 11 C -0.270 4.270 12 C 0.084 3.916 13 C -0.525 4.525 14 H 0.092 0.908 15 C -0.179 4.179 16 N -0.442 5.442 17 Si 0.801 3.199 18 H -0.182 1.182 19 H -0.185 1.185 20 H -0.192 1.192 21 C -0.212 4.212 22 C -0.096 4.096 23 C -0.018 4.018 24 C -0.131 4.131 25 C -0.192 4.192 26 C -0.171 4.171 27 N -0.193 5.193 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.087 0.913 31 H 0.226 0.774 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.147 0.853 40 H 0.109 0.891 41 H 0.133 0.867 42 H 0.147 0.853 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.134 -4.532 12.313 13.757 hybrid contribution 0.118 1.083 -1.317 1.709 sum -4.016 -3.449 10.996 12.204 Atomic orbital electron populations 1.23606 0.74317 1.05790 1.02763 1.86659 1.25167 1.31629 1.83640 1.19717 0.86792 0.81487 0.71420 1.90809 1.66401 1.36543 1.48936 1.19456 0.91026 0.91066 1.20560 1.22868 0.83065 1.00673 1.01768 1.45874 1.07029 1.07460 1.50352 1.20900 0.85399 0.94411 0.94813 1.19331 1.06379 1.01643 0.96927 1.20724 0.97657 0.96796 0.93499 1.21153 1.03707 1.04691 0.97422 1.18033 0.88996 0.91314 0.93244 1.19932 1.37656 0.96729 0.98226 0.90781 1.26751 0.94931 0.93860 1.02383 1.69867 1.34774 1.00284 1.39305 0.85179 0.78293 0.79820 0.76591 1.18239 1.18528 1.19244 1.21275 1.03901 1.01950 0.94095 1.20848 0.96709 0.97297 0.94730 1.22756 0.94237 0.81275 1.03532 1.20459 0.92660 0.91601 1.08354 1.22992 1.03676 0.92263 1.00280 1.23104 1.04170 0.99146 0.90719 1.70482 0.99173 1.30293 1.19379 0.91947 0.85027 0.91289 0.77417 0.86597 0.86079 0.86317 0.88915 0.89952 0.88031 0.86594 0.85323 0.89062 0.86708 0.85296 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.57 113.37 1.20 1.78 16 2 O -0.36 -11.03 10.58 -56.92 -0.60 -11.63 16 3 C 0.56 19.25 7.95 70.17 0.56 19.81 16 4 O -0.54 -19.19 16.67 19.67 0.33 -18.87 16 5 C -0.09 -3.33 7.02 40.47 0.28 -3.05 16 6 C 0.06 1.82 11.25 83.75 0.94 2.76 16 7 N -0.43 -12.91 2.71 -517.68 -1.40 -14.31 16 8 C 0.16 4.27 5.90 85.63 0.51 4.77 16 9 C -0.24 -8.68 5.49 -19.68 -0.11 -8.79 16 10 C -0.07 -2.68 9.67 22.22 0.21 -2.46 16 11 C -0.25 -11.75 9.80 22.73 0.22 -11.52 16 12 C 0.09 4.50 5.57 -21.29 -0.12 4.39 16 13 C -0.50 -26.17 9.05 23.46 0.21 -25.96 16 14 H 0.07 3.81 7.91 -2.91 -0.02 3.78 16 15 C 0.04 1.80 5.14 85.26 0.44 2.24 16 16 N -0.82 -41.58 10.95 21.83 0.24 -41.34 16 17 Si 0.98 37.21 29.59 68.60 2.03 39.24 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 19 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 20 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 21 C -0.19 -9.47 8.70 22.73 0.20 -9.27 16 22 C -0.08 -3.12 9.37 22.22 0.21 -2.91 16 23 C 0.25 7.98 7.44 137.97 1.03 9.00 16 24 C -0.11 -2.98 5.76 -11.54 -0.07 -3.05 16 25 C -0.15 -3.77 10.13 30.60 0.31 -3.46 16 26 C -0.13 -2.69 10.23 30.59 0.31 -2.38 16 27 N -0.47 -17.12 10.87 -176.83 -1.92 -19.04 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.21 5.24 8.06 -2.91 -0.02 5.22 16 32 H 0.12 2.50 7.86 -2.38 -0.02 2.48 16 33 H 0.12 2.46 8.07 -2.39 -0.02 2.44 16 34 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 35 H 0.09 4.22 8.06 -2.91 -0.02 4.20 16 36 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 37 H 0.10 5.27 6.16 -2.91 -0.02 5.26 16 38 H 0.12 3.96 5.63 -2.91 -0.02 3.95 16 39 H 0.13 3.42 5.21 -2.39 -0.01 3.41 16 40 H 0.09 2.55 7.87 -2.39 -0.02 2.53 16 41 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -66.71 371.76 6.05 -60.66 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 1.04 Total: 33.40 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 6.34 Total: -28.10 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -3.08 Total: -74.70 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.27 Total: -30.50 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -66.71 6.05 -60.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784057239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.679 kcal (2) G-P(sol) polarization free energy of solvation -66.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds