Wall clock time and date at job start Tue Mar 31 2020 14:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34824 * 125.89852 * 2 1 4 4 C 1.36422 * 107.61578 * 179.97438 * 3 2 1 5 5 C 1.48490 * 126.22436 * 179.97438 * 4 3 2 6 6 C 1.39420 * 120.04437 * 0.25772 * 5 4 3 7 7 C 1.38136 * 120.18640 * 180.27162 * 6 5 4 8 8 C 1.38045 * 120.27482 * 359.49184 * 7 6 5 9 9 C 1.39652 * 120.08539 * 0.23379 * 8 7 6 10 10 C 1.47746 * 120.09420 * 180.02562 * 9 8 7 11 11 O 1.21469 * 120.00049 * 179.97438 * 10 9 8 12 12 O 1.34701 * 119.99727 * 359.97438 * 10 9 8 13 13 C 1.45203 * 117.00049 * 177.71232 * 12 10 9 14 14 C 1.50699 * 112.85034 * 65.17263 * 13 12 10 15 15 H 1.08005 * 120.00286 * 242.53528 * 14 13 12 16 16 C 1.37879 * 120.00163 * 62.52818 * 14 13 12 17 17 N 1.31515 * 119.99942 * 353.77572 * 16 14 13 18 18 Si 1.86796 * 120.00161 * 173.76860 * 16 14 13 19 19 H 1.48498 * 109.47253 * 90.00083 * 18 16 14 20 20 H 1.48498 * 109.47348 * 210.00345 * 18 16 14 21 21 H 1.48507 * 109.47205 * 330.00158 * 18 16 14 22 22 C 1.53778 * 113.61245 * 293.97863 * 13 12 10 23 23 C 1.53951 * 87.02128 * 220.04662 * 22 13 12 24 24 C 1.53775 * 113.61718 * 196.37201 * 13 12 10 25 25 C 1.39020 * 120.04536 * 180.02562 * 5 4 3 26 26 C 1.40842 * 107.55471 * 0.26180 * 4 3 2 27 27 N 1.30682 * 108.09609 * 359.55449 * 26 4 3 28 28 H 1.09005 * 109.46784 * 90.00149 * 1 2 3 29 29 H 1.08997 * 109.47162 * 209.99860 * 1 2 3 30 30 H 1.08993 * 109.47188 * 330.00786 * 1 2 3 31 31 H 1.08008 * 126.18979 * 359.97393 * 3 2 1 32 32 H 1.07998 * 119.90811 * 0.04029 * 6 5 4 33 33 H 1.07999 * 119.86110 * 179.76247 * 7 6 5 34 34 H 1.07998 * 119.95555 * 180.24980 * 8 7 6 35 35 H 0.97001 * 120.00280 * 185.02192 * 17 16 14 36 36 H 1.08998 * 113.61529 * 334.56739 * 22 13 12 37 37 H 1.09003 * 113.61839 * 105.46933 * 22 13 12 38 38 H 1.09007 * 113.53670 * 270.81199 * 23 22 13 39 39 H 1.09002 * 113.74866 * 139.94474 * 23 22 13 40 40 H 1.09005 * 113.61236 * 254.52817 * 24 13 12 41 41 H 1.09000 * 113.61571 * 25.34571 * 24 13 12 42 42 H 1.08003 * 120.13287 * 359.95673 * 25 5 4 43 43 H 1.07998 * 125.95215 * 179.73458 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.0922 0.0000 4 6 3.5509 0.6642 0.0006 5 6 4.7599 1.5263 0.0003 6 6 4.6275 2.9142 0.0047 7 6 5.7502 3.7190 -0.0012 8 6 7.0104 3.1556 -0.0011 9 6 7.1563 1.7667 0.0002 10 6 8.5050 1.1635 0.0010 11 8 8.6300 -0.0448 0.0026 12 8 9.5961 1.9534 0.0000 13 6 10.8882 1.2930 0.0525 14 6 11.1727 0.4655 -1.1744 15 1 11.3055 -0.6027 -1.0865 16 6 11.2633 1.0720 -2.4093 17 7 10.9815 2.3503 -2.5364 18 14 11.7866 0.0782 -3.9019 19 1 10.5867 -0.5058 -4.5532 20 1 12.4906 0.9635 -4.8641 21 1 12.6987 -1.0132 -3.4750 22 6 11.1452 0.5466 1.3721 23 6 12.5913 1.0688 1.2926 24 6 12.0431 2.2292 0.4454 25 6 6.0253 0.9507 0.0004 26 6 3.5330 -0.7441 -0.0052 27 7 2.2858 -1.1342 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.9234 2.1199 -0.0004 32 1 3.6445 3.3614 0.0090 33 1 5.6415 4.7935 -0.0016 34 1 7.8847 3.7897 -0.0016 35 1 10.9743 2.7604 -3.4154 36 1 10.5827 0.9456 2.2162 37 1 11.0659 -0.5370 1.2836 38 1 13.2633 0.4079 0.7450 39 1 12.9977 1.3838 2.2537 40 1 12.6875 2.5022 -0.3903 41 1 11.7263 3.0899 1.0345 42 1 6.1321 -0.1241 0.0014 43 1 4.3992 -1.3892 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810855291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:15 Heat of formation + Delta-G solvation = 43.633624 kcal Electronic energy + Delta-G solvation = -26864.802998 eV Core-core repulsion = 23070.746279 eV Total energy + Delta-G solvation = -3794.056719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33656 -39.47741 -38.37995 -36.75752 -34.12414 -33.69566 -32.26541 -31.94943 -30.79494 -29.11641 -26.65230 -26.18485 -24.55046 -24.19092 -22.84483 -22.51350 -21.12560 -20.46128 -19.42521 -18.51988 -17.67719 -16.74743 -16.15480 -15.66372 -15.58979 -15.19251 -14.79219 -14.60908 -14.54523 -14.23233 -13.85003 -13.77002 -13.46251 -13.22602 -13.15321 -12.88978 -12.62198 -12.38655 -12.11056 -11.57438 -11.35987 -11.17003 -11.05087 -10.98245 -10.86777 -10.60043 -10.42554 -10.25788 -9.88534 -9.78390 -9.64180 -9.56776 -9.31980 -8.76398 -8.67647 -8.52676 -8.47468 -7.73328 -6.08003 -4.19481 1.09907 1.39918 1.87238 2.30720 2.80648 3.29236 3.35874 3.39998 3.64505 3.97635 4.28505 4.37862 4.44982 4.57628 4.80929 4.86045 4.99875 5.06639 5.15351 5.20898 5.25923 5.45337 5.52944 5.64419 5.69234 5.78113 5.83736 5.94538 6.04689 6.18788 6.25521 6.43047 6.47399 6.52118 6.66130 6.68922 6.70815 6.76410 6.86742 6.94962 7.13205 7.15165 7.31391 7.52552 7.58339 7.81767 7.95996 8.37254 8.84080 9.24444 9.50619 10.96352 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.016153 B = 0.003081 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.015049 B = 9086.535325 C = 9502.666365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.378 5.378 3 C 0.064 3.936 4 C -0.189 4.189 5 C -0.016 4.016 6 C -0.104 4.104 7 C -0.129 4.129 8 C -0.069 4.069 9 C -0.097 4.097 10 C 0.503 3.497 11 O -0.508 6.508 12 O -0.337 6.337 13 C 0.242 3.758 14 C -0.514 4.514 15 H 0.068 0.932 16 C 0.076 3.924 17 N -0.860 5.860 18 Si 0.892 3.108 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.159 4.159 23 C -0.132 4.132 24 C -0.108 4.108 25 C -0.062 4.062 26 C 0.067 3.933 27 N -0.298 5.298 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.139 0.861 35 H 0.262 0.738 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.134 0.866 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.302 3.169 6.056 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.083 4.083 4 C -0.200 4.200 5 C -0.017 4.017 6 C -0.122 4.122 7 C -0.147 4.147 8 C -0.088 4.088 9 C -0.098 4.098 10 C 0.346 3.654 11 O -0.398 6.398 12 O -0.253 6.253 13 C 0.208 3.792 14 C -0.551 4.551 15 H 0.086 0.914 16 C -0.130 4.130 17 N -0.496 5.496 18 Si 0.719 3.281 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.197 4.197 23 C -0.169 4.169 24 C -0.146 4.146 25 C -0.081 4.081 26 C -0.120 4.120 27 N -0.118 5.118 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.194 0.806 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.152 0.848 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -18.132 1.976 5.944 19.183 hybrid contribution 0.679 0.222 -1.034 1.257 sum -17.453 2.198 4.909 18.263 Atomic orbital electron populations 1.21854 0.74153 1.04487 1.03412 1.48378 1.06698 1.03852 1.56957 1.22474 0.90596 0.93317 1.01904 1.18874 0.91956 0.92982 1.16183 1.17841 0.90554 0.91993 1.01342 1.21137 0.98501 0.92445 1.00127 1.20998 0.92118 0.99786 1.01775 1.21578 0.98094 0.94189 0.94919 1.19571 0.91924 0.93963 1.04370 1.20643 0.85382 0.85535 0.73840 1.90710 1.87766 1.15617 1.45710 1.86532 1.15742 1.41772 1.81260 1.21186 0.76386 0.89695 0.91925 1.20946 1.49479 0.93927 0.90782 0.91410 1.25063 0.94091 0.94771 0.99054 1.70026 1.45654 1.10406 1.23553 0.86583 0.79028 0.80123 0.82370 1.20487 1.21022 1.19519 1.23559 0.96302 1.00893 0.98950 1.22568 0.96363 0.99363 0.98642 1.22901 0.97534 0.95689 0.98429 1.21181 0.90054 1.00404 0.96413 1.24097 0.95139 0.94450 0.98326 1.77278 1.01820 1.07995 1.24707 0.90713 0.89253 0.89477 0.80639 0.86363 0.85635 0.84302 0.92771 0.92227 0.91788 0.90239 0.93001 0.90740 0.92269 0.84808 0.79414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.46 59.85 0.69 1.26 16 2 N -0.38 -3.96 4.00 -67.90 -0.27 -4.23 16 3 C 0.06 0.65 10.87 -16.89 -0.18 0.46 16 4 C -0.19 -2.44 6.04 -105.34 -0.64 -3.08 16 5 C -0.02 -0.23 5.87 -104.94 -0.62 -0.85 16 6 C -0.10 -1.28 9.56 -39.18 -0.37 -1.66 16 7 C -0.13 -1.72 10.02 -39.69 -0.40 -2.11 16 8 C -0.07 -1.18 9.61 -39.12 -0.38 -1.55 16 9 C -0.10 -1.90 5.87 -105.02 -0.62 -2.51 16 10 C 0.50 12.07 7.46 34.62 0.26 12.33 16 11 O -0.51 -13.22 14.83 -19.24 -0.29 -13.51 16 12 O -0.34 -8.56 9.00 -40.49 -0.36 -8.92 16 13 C 0.24 6.12 0.47 -90.96 -0.04 6.08 16 14 C -0.51 -14.31 7.08 -34.44 -0.24 -14.56 16 15 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 16 C 0.08 2.11 5.30 -17.82 -0.09 2.01 16 17 N -0.86 -24.21 12.79 55.43 0.71 -23.50 16 18 Si 0.89 21.52 29.55 -169.99 -5.02 16.49 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.16 -3.56 6.57 -25.83 -0.17 -3.73 16 23 C -0.13 -2.66 7.81 -25.83 -0.20 -2.86 16 24 C -0.11 -2.46 7.28 -25.92 -0.19 -2.65 16 25 C -0.06 -1.06 9.12 -38.83 -0.35 -1.42 16 26 C 0.07 0.90 11.41 -17.06 -0.19 0.70 16 27 N -0.30 -4.00 12.54 30.80 0.39 -3.62 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.18 1.13 7.27 -52.48 -0.38 0.75 16 32 H 0.12 1.05 7.00 -52.49 -0.37 0.68 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.14 2.41 7.60 -52.49 -0.40 2.01 16 35 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.48 8.09 -51.93 -0.42 1.06 16 38 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.81 7.98 -51.93 -0.41 1.40 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.13 2.29 6.63 -52.48 -0.35 1.94 16 43 H 0.19 2.28 7.34 -52.49 -0.39 1.90 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -33.98 368.93 -8.68 -42.66 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.64 Total: 3.21 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -3.75 Total: -14.13 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.82 Total: -31.36 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.65 Total: -22.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.98 -8.68 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.289 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds