Wall clock time and date at job start Tue Mar 31 2020 14:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34824 * 125.89852 * 2 1 4 4 C 1.36422 * 107.61578 * 179.97438 * 3 2 1 5 5 C 1.48490 * 126.22436 * 179.97438 * 4 3 2 6 6 C 1.39420 * 120.04437 * 0.25772 * 5 4 3 7 7 C 1.38136 * 120.18640 * 180.27162 * 6 5 4 8 8 C 1.38045 * 120.27482 * 359.49184 * 7 6 5 9 9 C 1.39652 * 120.08539 * 0.23379 * 8 7 6 10 10 C 1.47746 * 120.09420 * 180.02562 * 9 8 7 11 11 O 1.21469 * 120.00049 * 179.97438 * 10 9 8 12 12 O 1.34701 * 119.99727 * 359.97438 * 10 9 8 13 13 C 1.45203 * 117.00049 * 177.71232 * 12 10 9 14 14 C 1.50699 * 112.85034 * 65.17263 * 13 12 10 15 15 H 1.08005 * 120.00286 * 242.53528 * 14 13 12 16 16 C 1.37879 * 120.00163 * 62.52818 * 14 13 12 17 17 N 1.31515 * 119.99942 * 353.77572 * 16 14 13 18 18 Si 1.86796 * 120.00161 * 173.76860 * 16 14 13 19 19 H 1.48498 * 109.47253 * 90.00083 * 18 16 14 20 20 H 1.48498 * 109.47348 * 210.00345 * 18 16 14 21 21 H 1.48507 * 109.47205 * 330.00158 * 18 16 14 22 22 C 1.53778 * 113.61245 * 293.97863 * 13 12 10 23 23 C 1.53951 * 87.02128 * 220.04662 * 22 13 12 24 24 C 1.53775 * 113.61718 * 196.37201 * 13 12 10 25 25 C 1.39020 * 120.04536 * 180.02562 * 5 4 3 26 26 C 1.40842 * 107.55471 * 0.26180 * 4 3 2 27 27 N 1.30682 * 108.09609 * 359.55449 * 26 4 3 28 28 H 1.09005 * 109.46784 * 90.00149 * 1 2 3 29 29 H 1.08997 * 109.47162 * 209.99860 * 1 2 3 30 30 H 1.08993 * 109.47188 * 330.00786 * 1 2 3 31 31 H 1.08008 * 126.18979 * 359.97393 * 3 2 1 32 32 H 1.07998 * 119.90811 * 0.04029 * 6 5 4 33 33 H 1.07999 * 119.86110 * 179.76247 * 7 6 5 34 34 H 1.07998 * 119.95555 * 180.24980 * 8 7 6 35 35 H 0.97001 * 120.00280 * 185.02192 * 17 16 14 36 36 H 1.08998 * 113.61529 * 334.56739 * 22 13 12 37 37 H 1.09003 * 113.61839 * 105.46933 * 22 13 12 38 38 H 1.09007 * 113.53670 * 270.81199 * 23 22 13 39 39 H 1.09002 * 113.74866 * 139.94474 * 23 22 13 40 40 H 1.09005 * 113.61236 * 254.52817 * 24 13 12 41 41 H 1.09000 * 113.61571 * 25.34571 * 24 13 12 42 42 H 1.08003 * 120.13287 * 359.95673 * 25 5 4 43 43 H 1.07998 * 125.95215 * 179.73458 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.0922 0.0000 4 6 3.5509 0.6642 0.0006 5 6 4.7599 1.5263 0.0003 6 6 4.6275 2.9142 0.0047 7 6 5.7502 3.7190 -0.0012 8 6 7.0104 3.1556 -0.0011 9 6 7.1563 1.7667 0.0002 10 6 8.5050 1.1635 0.0010 11 8 8.6300 -0.0448 0.0026 12 8 9.5961 1.9534 0.0000 13 6 10.8882 1.2930 0.0525 14 6 11.1727 0.4655 -1.1744 15 1 11.3055 -0.6027 -1.0865 16 6 11.2633 1.0720 -2.4093 17 7 10.9815 2.3503 -2.5364 18 14 11.7866 0.0782 -3.9019 19 1 10.5867 -0.5058 -4.5532 20 1 12.4906 0.9635 -4.8641 21 1 12.6987 -1.0132 -3.4750 22 6 11.1452 0.5466 1.3721 23 6 12.5913 1.0688 1.2926 24 6 12.0431 2.2292 0.4454 25 6 6.0253 0.9507 0.0004 26 6 3.5330 -0.7441 -0.0052 27 7 2.2858 -1.1342 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.9234 2.1199 -0.0004 32 1 3.6445 3.3614 0.0090 33 1 5.6415 4.7935 -0.0016 34 1 7.8847 3.7897 -0.0016 35 1 10.9743 2.7604 -3.4154 36 1 10.5827 0.9456 2.2162 37 1 11.0659 -0.5370 1.2836 38 1 13.2633 0.4079 0.7450 39 1 12.9977 1.3838 2.2537 40 1 12.6875 2.5022 -0.3903 41 1 11.7263 3.0899 1.0345 42 1 6.1321 -0.1241 0.0014 43 1 4.3992 -1.3892 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810855291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:14 Heat of formation + Delta-G solvation = 24.634427 kcal Electronic energy + Delta-G solvation = -26865.626865 eV Core-core repulsion = 23070.746279 eV Total energy + Delta-G solvation = -3794.880586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.22000 -41.19190 -39.79853 -38.50588 -36.01618 -34.52366 -34.36936 -33.01226 -32.00970 -30.04547 -28.21728 -27.38590 -26.38256 -25.80126 -24.25221 -23.79699 -22.26940 -21.43399 -20.77371 -20.45371 -18.95757 -18.44327 -17.32057 -17.11888 -16.83494 -16.81598 -16.38850 -16.14220 -15.87293 -15.61460 -15.50837 -14.96421 -14.65515 -14.43737 -14.16384 -13.93181 -13.82639 -13.50773 -13.32197 -13.31232 -12.96796 -12.94520 -12.81572 -12.46652 -12.28406 -12.24678 -12.10680 -11.79877 -11.64615 -11.58745 -11.17739 -10.78980 -10.70005 -10.53201 -10.43478 -10.41800 -9.89843 -8.75084 -8.19138 -6.36581 -0.10734 0.23679 0.95414 1.33820 1.35502 1.45796 1.63636 1.69009 2.14071 2.31354 2.37787 3.08050 3.11357 3.50670 3.83401 3.93567 4.01033 4.02857 4.05007 4.13809 4.24568 4.30052 4.34007 4.40136 4.47237 4.48215 4.59977 4.72891 4.75093 4.83752 4.87918 4.92929 4.98660 5.08433 5.15113 5.35955 5.42191 5.43546 5.51853 5.55319 5.60322 5.65326 5.78003 5.99227 6.02294 6.09300 6.41385 6.63144 6.67316 7.28900 7.42600 8.84606 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.016153 B = 0.003081 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.015049 B = 9086.535325 C = 9502.666365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.373 5.373 3 C 0.092 3.908 4 C -0.223 4.223 5 C -0.006 4.006 6 C -0.083 4.083 7 C -0.114 4.114 8 C -0.085 4.085 9 C -0.132 4.132 10 C 0.493 3.507 11 O -0.546 6.546 12 O -0.348 6.348 13 C 0.215 3.785 14 C -0.532 4.532 15 H 0.046 0.954 16 C 0.035 3.965 17 N -0.882 5.882 18 Si 0.946 3.054 19 H -0.285 1.285 20 H -0.270 1.270 21 H -0.266 1.266 22 C -0.155 4.155 23 C -0.111 4.111 24 C -0.104 4.104 25 C -0.081 4.081 26 C 0.047 3.953 27 N -0.331 5.331 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.227 0.773 32 H 0.173 0.827 33 H 0.167 0.833 34 H 0.126 0.874 35 H 0.265 0.735 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.369 5.651 6.432 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.154 5.154 3 C -0.056 4.056 4 C -0.234 4.234 5 C -0.008 4.008 6 C -0.101 4.101 7 C -0.132 4.132 8 C -0.103 4.103 9 C -0.133 4.133 10 C 0.339 3.661 11 O -0.439 6.439 12 O -0.264 6.264 13 C 0.181 3.819 14 C -0.569 4.569 15 H 0.064 0.936 16 C -0.169 4.169 17 N -0.518 5.518 18 Si 0.772 3.228 19 H -0.211 1.211 20 H -0.195 1.195 21 H -0.190 1.190 22 C -0.193 4.193 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.099 4.099 26 C -0.139 4.139 27 N -0.152 5.152 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.142 0.858 31 H 0.243 0.757 32 H 0.190 0.810 33 H 0.185 0.815 34 H 0.144 0.856 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -21.206 4.448 6.325 22.572 hybrid contribution 1.372 -0.555 -1.124 1.858 sum -19.834 3.893 5.202 20.871 Atomic orbital electron populations 1.22306 0.71254 1.06401 1.04936 1.48835 1.08311 1.03189 1.55057 1.23132 0.89159 0.95061 0.98248 1.18906 0.92819 0.92427 1.19263 1.18010 0.89577 0.93418 0.99766 1.21693 1.00591 0.91093 0.96754 1.21407 0.90443 1.01910 0.99401 1.21584 0.99768 0.92707 0.96249 1.19417 0.89786 0.95518 1.08567 1.21542 0.86727 0.85343 0.72515 1.90661 1.88420 1.17090 1.47756 1.86505 1.16247 1.42077 1.81523 1.21445 0.77077 0.91068 0.92325 1.21056 1.50117 0.93211 0.92557 0.93609 1.25698 0.94096 0.95810 1.01312 1.70103 1.46309 1.11328 1.24100 0.85740 0.78459 0.79141 0.79509 1.21142 1.19477 1.19044 1.23497 0.98222 0.99571 0.97980 1.22487 0.94848 0.97475 0.99966 1.22864 0.96297 0.96683 0.98347 1.21143 0.91119 0.99577 0.98105 1.24144 0.95304 0.95389 0.99016 1.77221 1.02065 1.09979 1.25978 0.89330 0.89254 0.85767 0.75703 0.81007 0.81547 0.85646 0.92625 0.91069 0.93548 0.90606 0.88897 0.92831 0.90797 0.86618 0.80381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.46 127.77 1.46 2.11 16 2 N -0.37 -6.65 4.00 -368.72 -1.48 -8.12 16 3 C 0.09 1.47 10.87 83.81 0.91 2.38 16 4 C -0.22 -5.38 6.04 -20.33 -0.12 -5.50 16 5 C -0.01 -0.17 5.87 -20.07 -0.12 -0.29 16 6 C -0.08 -1.69 9.56 22.53 0.22 -1.48 16 7 C -0.11 -2.65 10.02 22.20 0.22 -2.43 16 8 C -0.08 -2.87 9.61 22.57 0.22 -2.66 16 9 C -0.13 -5.42 5.87 -20.13 -0.12 -5.54 16 10 C 0.49 25.33 7.46 70.34 0.52 25.86 16 11 O -0.55 -30.86 14.83 19.94 0.30 -30.57 16 12 O -0.35 -18.59 9.00 -56.10 -0.50 -19.09 16 13 C 0.21 11.35 0.47 -11.02 -0.01 11.34 16 14 C -0.53 -31.10 7.08 25.60 0.18 -30.91 16 15 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 16 C 0.03 1.97 5.30 84.65 0.45 2.42 16 17 N -0.88 -51.14 12.79 21.45 0.27 -50.86 16 18 Si 0.95 45.49 29.55 68.60 2.03 47.51 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 C -0.15 -7.14 6.57 31.18 0.20 -6.94 16 23 C -0.11 -4.42 7.81 31.18 0.24 -4.17 16 24 C -0.10 -4.82 7.28 31.12 0.23 -4.60 16 25 C -0.08 -2.92 9.12 22.75 0.21 -2.71 16 26 C 0.05 1.30 11.41 85.50 0.98 2.27 16 27 N -0.33 -8.72 12.54 -56.46 -0.71 -9.43 16 28 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.23 1.15 7.27 -2.91 -0.02 1.12 16 32 H 0.17 1.69 7.00 -2.91 -0.02 1.67 16 33 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.13 4.50 7.60 -2.91 -0.02 4.47 16 35 H 0.26 14.53 8.32 -92.71 -0.77 13.76 16 36 H 0.07 3.05 8.14 -2.39 -0.02 3.04 16 37 H 0.05 2.25 8.09 -2.39 -0.02 2.23 16 38 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 39 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.05 2.67 7.98 -2.38 -0.02 2.65 16 41 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.12 4.43 6.63 -2.91 -0.02 4.42 16 43 H 0.18 4.90 7.34 -2.91 -0.02 4.88 16 Total: -1.00 -80.77 368.93 6.61 -74.16 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 1.02 Total: 17.25 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 5.68 Total: -20.84 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -1.91 Total: -68.42 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.21 Total: -49.66 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -80.77 6.61 -74.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.797 kcal (2) G-P(sol) polarization free energy of solvation -80.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds