Wall clock time and date at job start Tue Mar 31 2020 15:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00293 * 2 1 4 4 H 1.48502 * 109.46940 * 240.00148 * 3 2 1 5 5 H 1.48497 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47541 * 119.99982 * 3 2 1 7 7 C 1.37878 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00018 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46974 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46960 * 180.02562 * 10 9 7 12 12 C 1.35474 * 124.78790 * 265.02867 * 11 10 9 13 13 C 1.36381 * 109.76997 * 179.97438 * 12 11 10 14 14 C 1.46910 * 126.76863 * 180.02562 * 13 12 11 15 15 O 1.21670 * 119.99895 * 155.05245 * 14 13 12 16 16 N 1.34770 * 120.00146 * 335.04466 * 14 13 12 17 17 C 1.47233 * 127.02854 * 174.51258 * 16 14 13 18 18 C 1.51250 * 104.61473 * 180.02562 * 17 16 14 19 19 C 1.32747 * 107.37825 * 359.97438 * 18 17 16 20 20 N 1.38959 * 124.16887 * 179.97438 * 19 18 17 21 21 N 1.38216 * 111.65822 * 0.02562 * 19 18 17 22 22 C 1.47442 * 106.45990 * 0.26120 * 13 12 11 23 23 C 1.39280 * 134.00428 * 179.71354 * 22 13 12 24 24 C 1.37759 * 119.66766 * 180.02562 * 23 22 13 25 25 C 1.38748 * 120.30153 * 0.02562 * 24 23 22 26 26 C 1.37765 * 120.63838 * 359.56875 * 25 24 23 27 27 C 1.37969 * 124.78498 * 85.00508 * 11 10 9 28 28 H 0.96999 * 120.00413 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47291 * 60.00684 * 9 7 2 30 30 H 1.08996 * 109.47388 * 299.99970 * 9 7 2 31 31 H 1.09004 * 109.46991 * 60.00661 * 10 9 7 32 32 H 1.08996 * 109.47298 * 300.00344 * 10 9 7 33 33 H 1.07999 * 125.11756 * 359.97438 * 12 11 10 34 34 H 1.09002 * 110.40903 * 61.24769 * 17 16 14 35 35 H 1.09000 * 110.50822 * 298.86696 * 17 16 14 36 36 H 1.08001 * 126.31179 * 179.97438 * 18 17 16 37 37 H 0.96999 * 119.99197 * 179.97438 * 20 19 18 38 38 H 0.96993 * 120.00185 * 359.97438 * 20 19 18 39 39 H 0.96995 * 124.79662 * 179.73434 * 21 19 18 40 40 H 1.07996 * 120.16425 * 0.05195 * 23 22 13 41 41 H 1.08000 * 119.84357 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.67883 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.03672 * 179.90522 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7463 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5126 -4.9308 0.0020 12 6 1.2101 -5.6482 1.1106 13 6 0.5242 -6.7734 0.7591 14 6 0.0150 -7.8119 1.6649 15 8 -0.9315 -8.4997 1.3309 16 7 0.5964 -8.0029 2.8657 17 6 0.1487 -8.9133 3.9327 18 6 1.1588 -8.7259 5.0428 19 6 2.0425 -7.8268 4.6272 20 7 3.1268 -7.3923 5.3800 21 7 1.7506 -7.3753 3.3540 22 6 0.3997 -6.7449 -0.7098 23 6 -0.1781 -7.5963 -1.6485 24 6 -0.1215 -7.2745 -2.9868 25 6 0.5076 -6.1092 -3.4006 26 6 1.0759 -5.2539 -2.4822 27 6 1.0331 -5.5633 -1.1266 28 1 -0.4851 0.8400 -0.0004 29 1 0.6239 -2.5576 -0.8881 30 1 0.6246 -2.5563 0.8919 31 1 2.8724 -3.6040 0.8910 32 1 2.8711 -3.6048 -0.8890 33 1 1.4725 -5.3709 2.1209 34 1 0.1578 -9.9449 3.5809 35 1 -0.8487 -8.6383 4.2758 36 1 1.1607 -9.2307 5.9977 37 1 3.7363 -6.7316 5.0157 38 1 3.2740 -7.7498 6.2695 39 1 2.2689 -6.7146 2.8685 40 1 -0.6683 -8.5039 -1.3288 41 1 -0.5689 -7.9324 -3.7172 42 1 0.5457 -5.8665 -4.4524 43 1 1.5645 -4.3502 -2.8152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829845795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:59 Heat of formation + Delta-G solvation = 105.047789 kcal Electronic energy + Delta-G solvation = -26927.609381 eV Core-core repulsion = 23168.508532 eV Total energy + Delta-G solvation = -3759.100849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.39522 -40.32953 -38.07479 -36.94922 -34.75671 -34.14796 -32.52007 -31.08451 -30.46975 -30.32266 -28.94540 -28.37500 -25.43391 -24.29120 -22.69093 -22.17080 -21.81264 -20.91734 -20.20573 -20.09648 -17.90531 -17.10557 -16.73028 -16.39605 -16.25423 -15.76547 -15.47073 -15.29947 -14.89160 -14.74094 -14.36974 -13.94555 -13.67683 -13.51723 -13.43684 -13.03192 -12.96441 -12.53924 -12.41314 -12.37803 -12.14129 -11.86925 -11.48013 -11.27642 -11.11809 -10.78746 -10.71370 -10.70974 -10.36677 -9.99328 -9.93227 -9.51429 -9.29499 -8.59780 -8.55009 -8.03414 -7.44973 -7.02075 -6.23085 -4.30502 1.18528 1.79646 1.80040 2.19638 2.59324 3.02895 3.18221 3.24775 3.25647 3.43083 3.51850 3.95448 4.18193 4.26326 4.70660 4.90635 4.95120 5.12695 5.20559 5.28989 5.39658 5.50390 5.57727 5.64971 5.68824 5.74942 5.79925 5.88650 5.91557 5.94253 6.19019 6.28391 6.30574 6.48980 6.57071 6.66096 6.81231 6.87770 6.94934 7.25778 7.28103 7.31347 7.45895 7.47583 7.64383 7.72743 8.04961 8.08953 8.25219 8.74925 9.35778 10.87577 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009495 B = 0.003872 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.259836 B = 7230.002784 C = 9530.336438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.101 3.899 11 N -0.448 5.448 12 C 0.111 3.889 13 C -0.248 4.248 14 C 0.619 3.381 15 O -0.529 6.529 16 N -0.410 5.410 17 C 0.183 3.817 18 C -0.409 4.409 19 C 0.421 3.579 20 N -0.867 5.867 21 N -0.559 5.559 22 C -0.062 4.062 23 C -0.073 4.073 24 C -0.143 4.143 25 C -0.108 4.108 26 C -0.111 4.111 27 C 0.095 3.905 28 H 0.265 0.735 29 H 0.026 0.974 30 H 0.023 0.977 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.167 0.833 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.148 0.852 37 H 0.397 0.603 38 H 0.417 0.583 39 H 0.425 0.575 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 -15.178 5.521 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.077 0.923 9 C -0.026 4.026 10 C -0.019 4.019 11 N -0.125 5.125 12 C -0.025 4.025 13 C -0.259 4.259 14 C 0.410 3.590 15 O -0.403 6.403 16 N -0.235 5.235 17 C 0.061 3.939 18 C -0.444 4.444 19 C 0.216 3.784 20 N -0.414 5.414 21 N -0.295 5.295 22 C -0.066 4.066 23 C -0.092 4.092 24 C -0.162 4.162 25 C -0.127 4.127 26 C -0.131 4.131 27 C -0.010 4.010 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.184 0.816 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.224 0.776 38 H 0.248 0.752 39 H 0.270 0.730 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.815 -15.127 5.047 16.974 hybrid contribution 1.031 1.708 0.203 2.005 sum 6.846 -13.419 5.251 15.953 Atomic orbital electron populations 1.69953 1.06170 1.27309 1.48938 1.24999 0.94856 0.99468 0.94643 0.86568 0.79544 0.82660 0.78738 1.20031 1.21064 1.20086 1.20920 0.92942 0.90253 1.53156 0.92312 1.19459 0.94001 0.90470 0.98658 1.22495 0.95792 0.80523 1.03042 1.44365 1.44450 1.19658 1.03993 1.21967 0.97085 0.91670 0.91767 1.19616 1.14271 0.99323 0.92724 1.16720 0.81845 0.83030 0.77372 1.90817 1.28086 1.49124 1.72289 1.47859 1.19006 1.40764 1.15861 1.20498 0.97107 0.92283 0.83992 1.22001 1.04026 1.14690 1.03659 1.16377 0.88301 0.91634 0.82097 1.41649 1.29105 1.50900 1.19768 1.43726 1.23993 1.47333 1.14495 1.18626 1.01713 0.95326 0.90957 1.20513 0.98076 0.98870 0.91715 1.20880 1.02071 0.97960 0.95274 1.20773 0.98712 0.94423 0.98805 1.20154 1.03069 1.00717 0.89201 1.18258 1.00649 0.93373 0.88746 0.92495 0.95555 0.95893 0.89995 0.89952 0.81644 0.91397 0.91349 0.83436 0.77597 0.75173 0.72967 0.85664 0.86129 0.85837 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 13.28 55.43 0.74 -24.74 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.53 -13.75 9.11 -34.44 -0.31 -14.07 16 8 H 0.06 1.42 7.74 -52.48 -0.41 1.02 16 9 C 0.01 0.28 5.30 -27.88 -0.15 0.13 16 10 C 0.10 1.81 5.89 -4.04 -0.02 1.79 16 11 N -0.45 -7.76 2.74 -114.21 -0.31 -8.07 16 12 C 0.11 1.75 9.75 -16.61 -0.16 1.59 16 13 C -0.25 -4.26 6.10 -103.31 -0.63 -4.89 16 14 C 0.62 10.66 7.86 -12.75 -0.10 10.55 16 15 O -0.53 -10.42 17.18 5.22 0.09 -10.33 16 16 N -0.41 -5.90 3.97 -61.94 -0.25 -6.15 16 17 C 0.18 2.33 7.23 -4.52 -0.03 2.30 16 18 C -0.41 -4.35 11.12 -35.92 -0.40 -4.74 16 19 C 0.42 4.24 8.11 -152.05 -1.23 3.00 16 20 N -0.87 -5.40 9.09 31.00 0.28 -5.12 16 21 N -0.56 -6.49 6.48 30.99 0.20 -6.28 16 22 C -0.06 -1.11 6.29 -104.95 -0.66 -1.77 16 23 C -0.07 -1.20 10.02 -39.37 -0.39 -1.59 16 24 C -0.14 -2.03 10.03 -39.57 -0.40 -2.43 16 25 C -0.11 -1.54 10.01 -39.57 -0.40 -1.94 16 26 C -0.11 -1.83 9.97 -39.43 -0.39 -2.22 16 27 C 0.09 1.70 6.79 -83.96 -0.57 1.13 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.17 2.13 6.23 -52.49 -0.33 1.80 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.40 1.89 8.95 -40.82 -0.37 1.53 16 38 H 0.42 1.76 8.91 -40.82 -0.36 1.40 16 39 H 0.42 4.36 6.02 -182.56 -1.10 3.26 16 40 H 0.13 2.00 7.86 -52.49 -0.41 1.58 16 41 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 43 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -32.87 367.73 -11.02 -43.89 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.34 Total: 7.54 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -5.95 Total: -11.55 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.66 Total: -50.37 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.87 -11.02 -43.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829845795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.935 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds