Wall clock time and date at job start Tue Mar 31 2020 15:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00293 * 2 1 4 4 H 1.48502 * 109.46940 * 240.00148 * 3 2 1 5 5 H 1.48497 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47541 * 119.99982 * 3 2 1 7 7 C 1.37878 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00018 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46974 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46960 * 180.02562 * 10 9 7 12 12 C 1.35474 * 124.78790 * 265.02867 * 11 10 9 13 13 C 1.36381 * 109.76997 * 179.97438 * 12 11 10 14 14 C 1.46910 * 126.76863 * 180.02562 * 13 12 11 15 15 O 1.21670 * 119.99895 * 155.05245 * 14 13 12 16 16 N 1.34770 * 120.00146 * 335.04466 * 14 13 12 17 17 C 1.47233 * 127.02854 * 174.51258 * 16 14 13 18 18 C 1.51250 * 104.61473 * 180.02562 * 17 16 14 19 19 C 1.32747 * 107.37825 * 359.97438 * 18 17 16 20 20 N 1.38959 * 124.16887 * 179.97438 * 19 18 17 21 21 N 1.38216 * 111.65822 * 0.02562 * 19 18 17 22 22 C 1.47442 * 106.45990 * 0.26120 * 13 12 11 23 23 C 1.39280 * 134.00428 * 179.71354 * 22 13 12 24 24 C 1.37759 * 119.66766 * 180.02562 * 23 22 13 25 25 C 1.38748 * 120.30153 * 0.02562 * 24 23 22 26 26 C 1.37765 * 120.63838 * 359.56875 * 25 24 23 27 27 C 1.37969 * 124.78498 * 85.00508 * 11 10 9 28 28 H 0.96999 * 120.00413 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47291 * 60.00684 * 9 7 2 30 30 H 1.08996 * 109.47388 * 299.99970 * 9 7 2 31 31 H 1.09004 * 109.46991 * 60.00661 * 10 9 7 32 32 H 1.08996 * 109.47298 * 300.00344 * 10 9 7 33 33 H 1.07999 * 125.11756 * 359.97438 * 12 11 10 34 34 H 1.09002 * 110.40903 * 61.24769 * 17 16 14 35 35 H 1.09000 * 110.50822 * 298.86696 * 17 16 14 36 36 H 1.08001 * 126.31179 * 179.97438 * 18 17 16 37 37 H 0.96999 * 119.99197 * 179.97438 * 20 19 18 38 38 H 0.96993 * 120.00185 * 359.97438 * 20 19 18 39 39 H 0.96995 * 124.79662 * 179.73434 * 21 19 18 40 40 H 1.07996 * 120.16425 * 0.05195 * 23 22 13 41 41 H 1.08000 * 119.84357 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.67883 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.03672 * 179.90522 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7463 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5126 -4.9308 0.0020 12 6 1.2101 -5.6482 1.1106 13 6 0.5242 -6.7734 0.7591 14 6 0.0150 -7.8119 1.6649 15 8 -0.9315 -8.4997 1.3309 16 7 0.5964 -8.0029 2.8657 17 6 0.1487 -8.9133 3.9327 18 6 1.1588 -8.7259 5.0428 19 6 2.0425 -7.8268 4.6272 20 7 3.1268 -7.3923 5.3800 21 7 1.7506 -7.3753 3.3540 22 6 0.3997 -6.7449 -0.7098 23 6 -0.1781 -7.5963 -1.6485 24 6 -0.1215 -7.2745 -2.9868 25 6 0.5076 -6.1092 -3.4006 26 6 1.0759 -5.2539 -2.4822 27 6 1.0331 -5.5633 -1.1266 28 1 -0.4851 0.8400 -0.0004 29 1 0.6239 -2.5576 -0.8881 30 1 0.6246 -2.5563 0.8919 31 1 2.8724 -3.6040 0.8910 32 1 2.8711 -3.6048 -0.8890 33 1 1.4725 -5.3709 2.1209 34 1 0.1578 -9.9449 3.5809 35 1 -0.8487 -8.6383 4.2758 36 1 1.1607 -9.2307 5.9977 37 1 3.7363 -6.7316 5.0157 38 1 3.2740 -7.7498 6.2695 39 1 2.2689 -6.7146 2.8685 40 1 -0.6683 -8.5039 -1.3288 41 1 -0.5689 -7.9324 -3.7172 42 1 0.5457 -5.8665 -4.4524 43 1 1.5645 -4.3502 -2.8152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829845795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:57 Heat of formation + Delta-G solvation = 85.594450 kcal Electronic energy + Delta-G solvation = -26928.452941 eV Core-core repulsion = 23168.508532 eV Total energy + Delta-G solvation = -3759.944409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.65856 -41.38940 -39.28632 -38.20039 -35.90861 -35.57256 -34.15176 -32.23425 -31.78669 -31.31986 -30.34007 -29.66063 -27.04805 -25.46382 -24.05549 -23.57924 -23.09675 -21.95178 -21.49804 -21.18253 -19.07271 -18.71803 -17.85079 -17.58646 -17.24516 -16.91042 -16.68493 -16.63485 -16.47433 -15.91602 -15.78057 -15.28791 -14.96789 -14.74368 -14.68998 -14.47401 -14.28449 -13.89099 -13.63877 -13.52159 -13.31748 -13.03253 -12.89269 -12.86363 -12.61732 -12.41365 -12.08111 -11.98399 -11.71496 -11.66015 -11.45540 -11.27235 -10.66973 -10.61729 -9.43591 -9.29057 -8.72789 -8.26594 -7.92637 -6.41108 -0.06491 0.55340 0.78019 0.92140 1.40839 1.42958 1.51048 1.70698 1.75273 2.18752 2.38042 2.52214 2.92986 3.08303 3.24238 3.51443 3.63241 3.75411 4.03930 4.17298 4.24130 4.30453 4.38387 4.45634 4.54872 4.64289 4.65189 4.67582 4.68511 4.74733 4.79078 5.06898 5.31318 5.33875 5.36479 5.47673 5.56649 5.61848 5.66723 5.67286 5.77137 5.85978 5.98841 6.15915 6.20630 6.50122 6.75568 6.90393 7.09653 7.18955 7.30584 8.84756 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009495 B = 0.003872 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.259836 B = 7230.002784 C = 9530.336438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.020 3.980 10 C 0.117 3.883 11 N -0.454 5.454 12 C 0.119 3.881 13 C -0.264 4.264 14 C 0.613 3.387 15 O -0.567 6.567 16 N -0.409 5.409 17 C 0.173 3.827 18 C -0.418 4.418 19 C 0.420 3.580 20 N -0.849 5.849 21 N -0.558 5.558 22 C -0.087 4.087 23 C -0.092 4.092 24 C -0.133 4.133 25 C -0.101 4.101 26 C -0.129 4.129 27 C 0.071 3.929 28 H 0.264 0.736 29 H -0.011 1.011 30 H -0.008 1.008 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.193 0.807 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.169 0.831 37 H 0.407 0.593 38 H 0.428 0.572 39 H 0.430 0.570 40 H 0.122 0.878 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.879 -14.970 5.850 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.095 0.905 9 C -0.018 4.018 10 C -0.003 4.003 11 N -0.132 5.132 12 C -0.016 4.016 13 C -0.275 4.275 14 C 0.405 3.595 15 O -0.444 6.444 16 N -0.232 5.232 17 C 0.052 3.948 18 C -0.452 4.452 19 C 0.215 3.785 20 N -0.398 5.398 21 N -0.296 5.296 22 C -0.091 4.091 23 C -0.110 4.110 24 C -0.151 4.151 25 C -0.120 4.120 26 C -0.150 4.150 27 C -0.033 4.033 28 H 0.073 0.927 29 H 0.008 0.992 30 H 0.010 0.990 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.210 0.790 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.187 0.813 37 H 0.236 0.764 38 H 0.263 0.737 39 H 0.277 0.723 40 H 0.140 0.860 41 H 0.173 0.827 42 H 0.175 0.825 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.249 -14.934 5.429 17.903 hybrid contribution 0.269 1.570 0.085 1.595 sum 8.518 -13.363 5.515 16.779 Atomic orbital electron populations 1.70115 1.08164 1.28083 1.50836 1.25978 0.95568 1.03586 0.94333 0.85453 0.78142 0.77714 0.79481 1.18907 1.21575 1.18637 1.21430 0.93979 0.90970 1.51668 0.90501 1.19259 0.94369 0.92784 0.95374 1.22207 0.94260 0.78755 1.05037 1.44292 1.45028 1.19488 1.04383 1.22307 0.96067 0.90830 0.92415 1.19750 1.14944 1.00015 0.92792 1.16713 0.81744 0.82966 0.78116 1.90775 1.29770 1.50457 1.73427 1.47757 1.19555 1.40556 1.15335 1.20668 0.97832 0.91926 0.84399 1.22149 1.03615 1.15598 1.03880 1.16527 0.89136 0.91349 0.81528 1.41617 1.27798 1.50584 1.19800 1.43786 1.23150 1.47537 1.15174 1.18968 1.02431 0.95950 0.91737 1.20697 0.98680 0.98926 0.92715 1.21276 1.00768 0.98116 0.94957 1.21188 0.97044 0.93605 1.00117 1.20409 1.03963 1.01424 0.89161 1.18573 1.01461 0.93777 0.89514 0.92730 0.99212 0.99002 0.87090 0.88815 0.79044 0.91545 0.91760 0.81320 0.76419 0.73734 0.72303 0.85986 0.82750 0.82492 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.83 13.28 21.45 0.28 -54.55 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 4 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.54 -27.66 9.11 25.60 0.23 -27.43 16 8 H 0.08 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 0.96 5.30 29.85 0.16 1.12 16 10 C 0.12 4.10 5.89 86.38 0.51 4.61 16 11 N -0.45 -15.73 2.74 -515.27 -1.41 -17.14 16 12 C 0.12 3.74 9.75 83.70 0.82 4.56 16 13 C -0.26 -9.28 6.10 -19.01 -0.12 -9.40 16 14 C 0.61 21.79 7.86 86.51 0.68 22.47 16 15 O -0.57 -23.40 17.18 -4.25 -0.07 -23.47 16 16 N -0.41 -11.86 3.97 -468.10 -1.86 -13.72 16 17 C 0.17 4.42 7.23 85.67 0.62 5.04 16 18 C -0.42 -8.26 11.12 24.69 0.27 -7.99 16 19 C 0.42 7.66 8.11 129.86 1.05 8.72 16 20 N -0.85 -8.27 9.09 -55.85 -0.51 -8.77 16 21 N -0.56 -12.32 6.48 -55.85 -0.36 -12.68 16 22 C -0.09 -3.18 6.29 -20.08 -0.13 -3.31 16 23 C -0.09 -3.03 10.02 22.41 0.22 -2.81 16 24 C -0.13 -3.59 10.03 22.28 0.22 -3.36 16 25 C -0.10 -2.72 10.01 22.28 0.22 -2.49 16 26 C -0.13 -4.23 9.97 22.37 0.22 -4.00 16 27 C 0.07 2.58 6.79 38.91 0.26 2.85 16 28 H 0.26 14.75 8.31 -92.71 -0.77 13.97 16 29 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.11 3.24 8.11 -2.39 -0.02 3.22 16 32 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.19 4.72 6.23 -2.91 -0.02 4.70 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.41 2.69 8.95 -92.71 -0.83 1.86 16 38 H 0.43 2.34 8.91 -92.71 -0.83 1.51 16 39 H 0.43 8.20 6.02 -213.29 -1.28 6.91 16 40 H 0.12 4.03 7.86 -2.91 -0.02 4.01 16 41 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 43 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -73.72 367.73 1.95 -71.77 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -1.86 Total: 26.14 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 5.72 Total: -10.75 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -3.86 Total: -106.86 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.07 Total: -23.47 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -73.72 1.95 -71.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829845795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.365 kcal (2) G-P(sol) polarization free energy of solvation -73.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds