Wall clock time and date at job start Tue Mar 31 2020 14:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28428 * 125.06666 * 2 1 4 4 C 1.31649 * 110.80966 * 180.02562 * 3 2 1 5 5 C 1.48451 * 126.19880 * 180.02562 * 4 3 2 6 6 C 1.39312 * 120.11637 * 179.69644 * 5 4 3 7 7 C 1.38021 * 119.88318 * 179.76949 * 6 5 4 8 8 C 1.38315 * 120.11758 * 0.48544 * 7 6 5 9 9 C 1.38317 * 120.23587 * 359.79254 * 8 7 6 10 10 C 1.38023 * 120.12065 * 359.95444 * 9 8 7 11 11 C 1.40649 * 107.59203 * 359.74461 * 4 3 2 12 12 C 1.36719 * 125.07178 * 180.02562 * 2 1 3 13 13 C 1.47045 * 126.77852 * 359.97298 * 12 2 1 14 14 O 1.21547 * 119.99616 * 181.95886 * 13 12 2 15 15 O 1.34811 * 119.99909 * 1.67937 * 13 12 2 16 16 C 1.45204 * 116.99726 * 175.96746 * 15 13 12 17 17 C 1.52999 * 109.47056 * 184.46751 * 16 15 13 18 18 C 1.50707 * 115.54715 * 306.12623 * 17 16 15 19 19 H 1.07995 * 119.99864 * 144.79400 * 18 17 16 20 20 C 1.37878 * 120.00362 * 324.80070 * 18 17 16 21 21 N 1.31513 * 119.99396 * 349.11653 * 20 18 17 22 22 Si 1.86794 * 120.00222 * 169.11498 * 20 18 17 23 23 H 1.48500 * 109.47142 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46871 * 119.99846 * 22 20 18 25 25 H 1.48494 * 109.47216 * 239.99646 * 22 20 18 26 26 C 1.52995 * 117.50085 * 160.46185 * 17 16 15 27 27 C 1.52991 * 117.50231 * 91.79870 * 17 16 15 28 28 H 1.09004 * 109.46767 * 263.48830 * 1 2 3 29 29 H 1.08998 * 109.47575 * 23.48484 * 1 2 3 30 30 H 1.08999 * 109.47180 * 143.49491 * 1 2 3 31 31 H 1.08002 * 120.05758 * 0.02628 * 6 5 4 32 32 H 1.08001 * 119.94426 * 180.28322 * 7 6 5 33 33 H 1.07997 * 119.88495 * 179.76389 * 8 7 6 34 34 H 1.08005 * 119.94263 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.06509 * 180.02562 * 10 9 8 36 36 H 1.08008 * 127.34999 * 180.28976 * 11 4 3 37 37 H 1.09004 * 109.46856 * 304.45973 * 16 15 13 38 38 H 1.08991 * 109.47162 * 64.46177 * 16 15 13 39 39 H 0.97008 * 120.00001 * 185.03423 * 21 20 18 40 40 H 1.08999 * 117.50041 * 359.97438 * 26 17 16 41 41 H 1.09000 * 117.49891 * 145.01779 * 26 17 16 42 42 H 1.09004 * 117.50311 * 214.98061 * 27 17 16 43 43 H 1.09006 * 117.50146 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2028 1.0512 0.0000 4 6 3.4788 0.7269 -0.0006 5 6 4.6235 1.6721 -0.0002 6 6 5.9298 1.1879 0.0055 7 6 6.9905 2.0709 0.0010 8 6 6.7585 3.4345 0.0010 9 6 5.4635 3.9206 0.0011 10 6 4.3955 3.0464 0.0004 11 6 3.5606 -0.6772 0.0050 12 6 2.2505 -1.1190 -0.0005 13 6 1.7925 -2.5162 -0.0006 14 8 2.6029 -3.4214 0.0349 15 8 0.4736 -2.7932 -0.0343 16 6 0.0960 -4.1925 -0.1232 17 6 -1.4237 -4.3027 -0.2621 18 6 -2.2264 -3.5940 0.7983 19 1 -3.1656 -3.1263 0.5422 20 6 -1.7619 -3.5425 2.0954 21 7 -0.7381 -4.2845 2.4570 22 14 -2.5865 -2.4187 3.3390 23 1 -3.7070 -1.6954 2.6859 24 1 -3.1118 -3.2295 4.4668 25 1 -1.5966 -1.4384 3.8531 26 6 -1.9891 -5.6104 -0.8200 27 6 -2.0027 -4.3426 -1.6777 28 1 -0.3633 -0.1165 1.0211 29 1 -0.3634 0.9425 -0.4095 30 1 -0.3633 -0.8260 -0.6113 31 1 6.1121 0.1234 0.0093 32 1 8.0036 1.6966 0.0008 33 1 7.5913 4.1220 0.0013 34 1 5.2878 4.9863 0.0015 35 1 3.3847 3.4269 0.0001 36 1 4.4558 -1.2813 0.0105 37 1 0.5739 -4.6432 -0.9930 38 1 0.4172 -4.7135 0.7787 39 1 -0.4570 -4.3040 3.3853 40 1 -1.2784 -6.3920 -1.0884 41 1 -2.9418 -5.9578 -0.4203 42 1 -2.9644 -3.8566 -1.8421 43 1 -1.3010 -4.2899 -2.5102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835188253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:27 Heat of formation + Delta-G solvation = 46.472665 kcal Electronic energy + Delta-G solvation = -26970.967032 eV Core-core repulsion = 23177.033424 eV Total energy + Delta-G solvation = -3793.933609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.41659 -39.43920 -38.98383 -36.85022 -35.25540 -33.78403 -32.28121 -31.31370 -30.87373 -30.61364 -26.98251 -26.50117 -25.52118 -23.60228 -22.95160 -22.28375 -21.33300 -20.74220 -19.50314 -19.30112 -17.86716 -16.80888 -16.51122 -16.29902 -15.95035 -15.54072 -15.27285 -15.07574 -14.63405 -14.43294 -13.91874 -13.76017 -13.49584 -13.39632 -13.17828 -13.08077 -12.53060 -12.45611 -12.13678 -11.98468 -11.71590 -11.41565 -11.26139 -11.09877 -10.95608 -10.72240 -10.59015 -10.45779 -10.17689 -9.85407 -9.69949 -9.59671 -9.21357 -9.04391 -9.03171 -8.89005 -8.24837 -8.15944 -6.16731 -4.21720 0.95845 1.31981 1.35217 2.55278 2.73235 3.15379 3.21926 3.26632 3.28337 3.36612 3.88618 4.24733 4.29071 4.72088 4.80935 4.86498 4.95043 5.01325 5.07267 5.35972 5.36421 5.38339 5.50137 5.52127 5.62177 5.68691 5.86740 5.87625 5.96097 5.98831 6.08648 6.25593 6.32122 6.39811 6.46606 6.50712 6.51832 6.54437 6.65575 6.81378 6.85990 6.87654 7.14611 7.26275 7.32005 7.78340 8.02759 8.20735 8.39226 8.74369 9.38827 10.84720 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.003139 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.566673 B = 8917.991406 C = 9541.958453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.251 5.251 3 N -0.260 5.260 4 C 0.046 3.954 5 C 0.005 3.995 6 C -0.103 4.103 7 C -0.119 4.119 8 C -0.123 4.123 9 C -0.121 4.121 10 C -0.099 4.099 11 C -0.147 4.147 12 C -0.009 4.009 13 C 0.530 3.470 14 O -0.505 6.505 15 O -0.322 6.322 16 C 0.115 3.885 17 C 0.047 3.953 18 C -0.485 4.485 19 H 0.064 0.936 20 C 0.076 3.924 21 N -0.880 5.880 22 Si 0.890 3.110 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.191 4.191 27 C -0.210 4.210 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.166 0.834 37 H 0.030 0.970 38 H 0.116 0.884 39 H 0.264 0.736 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.021 12.000 -5.052 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.040 5.040 3 N -0.096 5.096 4 C -0.107 4.107 5 C 0.004 3.996 6 C -0.123 4.123 7 C -0.137 4.137 8 C -0.142 4.142 9 C -0.139 4.139 10 C -0.118 4.118 11 C -0.175 4.175 12 C -0.134 4.134 13 C 0.372 3.628 14 O -0.393 6.393 15 O -0.237 6.237 16 C 0.043 3.957 17 C 0.047 3.953 18 C -0.522 4.522 19 H 0.082 0.918 20 C -0.128 4.128 21 N -0.516 5.516 22 Si 0.717 3.283 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.229 4.229 27 C -0.247 4.247 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.183 0.817 37 H 0.048 0.952 38 H 0.134 0.866 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.416 12.531 -4.870 16.414 hybrid contribution -0.005 -0.415 0.760 0.866 sum 9.411 12.116 -4.110 15.882 Atomic orbital electron populations 1.22522 0.71205 1.05831 1.06148 1.45872 1.08355 1.01787 1.48021 1.73266 1.03196 1.13668 1.19487 1.20235 0.90278 0.91816 1.08363 1.17741 0.90005 0.91455 1.00427 1.21146 0.91236 1.00281 0.99638 1.21039 0.98778 0.93280 1.00605 1.21191 0.96885 0.95557 1.00525 1.21081 0.92557 0.99615 1.00673 1.21228 0.99666 0.92098 0.98792 1.22016 0.95613 0.93741 1.06085 1.20858 0.91271 0.86963 1.14291 1.19607 0.82716 0.86552 0.73953 1.90825 1.55797 1.46125 1.46534 1.86550 1.21876 1.33651 1.81598 1.22930 0.94914 0.76048 1.01820 1.18887 0.89789 0.95782 0.90854 1.20441 1.05587 1.34171 0.92002 0.91789 1.24932 0.94504 0.95012 0.98327 1.69779 1.26404 1.38115 1.17348 0.86569 0.79433 0.81063 0.81238 1.19437 1.20885 1.20798 1.22972 1.02453 0.91513 1.05981 1.22985 1.02224 1.03687 0.95820 0.88899 0.88694 0.86378 0.85460 0.85787 0.86176 0.85957 0.85350 0.81662 0.95173 0.86591 0.92589 0.91404 0.89686 0.90238 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.60 59.84 0.63 1.86 16 2 N -0.25 -4.26 3.75 -63.93 -0.24 -4.50 16 3 N -0.26 -4.28 11.58 33.40 0.39 -3.90 16 4 C 0.05 0.72 6.99 -82.83 -0.58 0.14 16 5 C 0.01 0.07 5.88 -104.89 -0.62 -0.54 16 6 C -0.10 -1.17 9.58 -39.26 -0.38 -1.54 16 7 C -0.12 -1.12 10.03 -39.63 -0.40 -1.52 16 8 C -0.12 -1.11 10.04 -39.52 -0.40 -1.50 16 9 C -0.12 -1.18 10.03 -39.63 -0.40 -1.58 16 10 C -0.10 -1.17 9.69 -39.26 -0.38 -1.56 16 11 C -0.15 -2.39 10.18 -38.67 -0.39 -2.79 16 12 C -0.01 -0.16 6.95 -82.11 -0.57 -0.73 16 13 C 0.53 11.15 7.93 34.30 0.27 11.43 16 14 O -0.50 -11.50 16.69 -19.30 -0.32 -11.82 16 15 O -0.32 -7.10 7.45 -40.80 -0.30 -7.40 16 16 C 0.12 2.68 4.56 37.16 0.17 2.85 16 17 C 0.05 1.10 2.12 -155.66 -0.33 0.77 16 18 C -0.48 -12.16 8.77 -34.44 -0.30 -12.46 16 19 H 0.06 1.60 7.84 -52.49 -0.41 1.19 16 20 C 0.08 1.92 5.19 -17.82 -0.09 1.83 16 21 N -0.88 -23.38 10.77 55.43 0.60 -22.78 16 22 Si 0.89 19.83 29.55 -169.99 -5.02 14.81 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.19 -4.04 9.96 -26.70 -0.27 -4.30 16 27 C -0.21 -4.23 9.92 -26.70 -0.26 -4.49 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.12 1.85 6.49 -51.93 -0.34 1.52 16 31 H 0.13 1.28 7.10 -52.49 -0.37 0.90 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 35 H 0.13 1.51 7.86 -52.49 -0.41 1.09 16 36 H 0.17 2.35 7.43 -52.48 -0.39 1.96 16 37 H 0.03 0.66 8.04 -51.93 -0.42 0.24 16 38 H 0.12 3.02 6.03 -51.93 -0.31 2.71 16 39 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 42 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -28.96 371.67 -9.19 -38.14 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.60 Total: 6.00 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -4.29 Total: -14.15 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.74 Total: -31.18 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.63 Total: -19.22 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.96 -9.19 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.617 kcal (2) G-P(sol) polarization free energy of solvation -28.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds