Wall clock time and date at job start Tue Mar 31 2020 14:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28428 * 125.06666 * 2 1 4 4 C 1.31649 * 110.80966 * 180.02562 * 3 2 1 5 5 C 1.48451 * 126.19880 * 180.02562 * 4 3 2 6 6 C 1.39312 * 120.11637 * 179.69644 * 5 4 3 7 7 C 1.38021 * 119.88318 * 179.76949 * 6 5 4 8 8 C 1.38315 * 120.11758 * 0.48544 * 7 6 5 9 9 C 1.38317 * 120.23587 * 359.79254 * 8 7 6 10 10 C 1.38023 * 120.12065 * 359.95444 * 9 8 7 11 11 C 1.40649 * 107.59203 * 359.74461 * 4 3 2 12 12 C 1.36719 * 125.07178 * 180.02562 * 2 1 3 13 13 C 1.47045 * 126.77852 * 359.97298 * 12 2 1 14 14 O 1.21547 * 119.99616 * 181.95886 * 13 12 2 15 15 O 1.34811 * 119.99909 * 1.67937 * 13 12 2 16 16 C 1.45204 * 116.99726 * 175.96746 * 15 13 12 17 17 C 1.52999 * 109.47056 * 184.46751 * 16 15 13 18 18 C 1.50707 * 115.54715 * 306.12623 * 17 16 15 19 19 H 1.07995 * 119.99864 * 144.79400 * 18 17 16 20 20 C 1.37878 * 120.00362 * 324.80070 * 18 17 16 21 21 N 1.31513 * 119.99396 * 349.11653 * 20 18 17 22 22 Si 1.86794 * 120.00222 * 169.11498 * 20 18 17 23 23 H 1.48500 * 109.47142 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46871 * 119.99846 * 22 20 18 25 25 H 1.48494 * 109.47216 * 239.99646 * 22 20 18 26 26 C 1.52995 * 117.50085 * 160.46185 * 17 16 15 27 27 C 1.52991 * 117.50231 * 91.79870 * 17 16 15 28 28 H 1.09004 * 109.46767 * 263.48830 * 1 2 3 29 29 H 1.08998 * 109.47575 * 23.48484 * 1 2 3 30 30 H 1.08999 * 109.47180 * 143.49491 * 1 2 3 31 31 H 1.08002 * 120.05758 * 0.02628 * 6 5 4 32 32 H 1.08001 * 119.94426 * 180.28322 * 7 6 5 33 33 H 1.07997 * 119.88495 * 179.76389 * 8 7 6 34 34 H 1.08005 * 119.94263 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.06509 * 180.02562 * 10 9 8 36 36 H 1.08008 * 127.34999 * 180.28976 * 11 4 3 37 37 H 1.09004 * 109.46856 * 304.45973 * 16 15 13 38 38 H 1.08991 * 109.47162 * 64.46177 * 16 15 13 39 39 H 0.97008 * 120.00001 * 185.03423 * 21 20 18 40 40 H 1.08999 * 117.50041 * 359.97438 * 26 17 16 41 41 H 1.09000 * 117.49891 * 145.01779 * 26 17 16 42 42 H 1.09004 * 117.50311 * 214.98061 * 27 17 16 43 43 H 1.09006 * 117.50146 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2028 1.0512 0.0000 4 6 3.4788 0.7269 -0.0006 5 6 4.6235 1.6721 -0.0002 6 6 5.9298 1.1879 0.0055 7 6 6.9905 2.0709 0.0010 8 6 6.7585 3.4345 0.0010 9 6 5.4635 3.9206 0.0011 10 6 4.3955 3.0464 0.0004 11 6 3.5606 -0.6772 0.0050 12 6 2.2505 -1.1190 -0.0005 13 6 1.7925 -2.5162 -0.0006 14 8 2.6029 -3.4214 0.0349 15 8 0.4736 -2.7932 -0.0343 16 6 0.0960 -4.1925 -0.1232 17 6 -1.4237 -4.3027 -0.2621 18 6 -2.2264 -3.5940 0.7983 19 1 -3.1656 -3.1263 0.5422 20 6 -1.7619 -3.5425 2.0954 21 7 -0.7381 -4.2845 2.4570 22 14 -2.5865 -2.4187 3.3390 23 1 -3.7070 -1.6954 2.6859 24 1 -3.1118 -3.2295 4.4668 25 1 -1.5966 -1.4384 3.8531 26 6 -1.9891 -5.6104 -0.8200 27 6 -2.0027 -4.3426 -1.6777 28 1 -0.3633 -0.1165 1.0211 29 1 -0.3634 0.9425 -0.4095 30 1 -0.3633 -0.8260 -0.6113 31 1 6.1121 0.1234 0.0093 32 1 8.0036 1.6966 0.0008 33 1 7.5913 4.1220 0.0013 34 1 5.2878 4.9863 0.0015 35 1 3.3847 3.4269 0.0001 36 1 4.4558 -1.2813 0.0105 37 1 0.5739 -4.6432 -0.9930 38 1 0.4172 -4.7135 0.7787 39 1 -0.4570 -4.3040 3.3853 40 1 -1.2784 -6.3920 -1.0884 41 1 -2.9418 -5.9578 -0.4203 42 1 -2.9644 -3.8566 -1.8421 43 1 -1.3010 -4.2899 -2.5102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835188253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:27 Heat of formation + Delta-G solvation = 33.967016 kcal Electronic energy + Delta-G solvation = -26971.509318 eV Core-core repulsion = 23177.033424 eV Total energy + Delta-G solvation = -3794.475894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.70645 -41.11043 -39.81779 -38.59192 -36.96699 -34.94383 -34.19903 -32.49857 -31.79101 -31.61637 -28.65126 -27.72882 -27.42393 -24.97549 -23.95855 -23.29501 -22.97324 -21.90801 -21.14051 -20.85468 -19.16365 -18.60942 -17.75556 -17.62897 -17.36291 -16.94018 -16.78073 -16.42093 -16.08104 -15.66216 -15.30957 -15.01255 -14.83818 -14.43976 -14.23591 -14.19516 -13.99503 -13.91901 -13.59414 -13.40845 -13.28752 -12.90967 -12.80773 -12.41441 -12.30035 -12.14602 -12.14100 -11.93083 -11.67246 -11.50109 -11.36367 -11.08122 -10.91748 -10.68325 -10.38650 -10.08604 -9.81766 -9.17787 -8.09162 -6.18858 -0.11627 0.06508 0.53919 1.27250 1.36722 1.42969 1.51654 1.57921 1.64846 1.84887 2.39080 2.99434 3.02983 3.14306 3.45101 3.63921 3.70517 4.09335 4.14531 4.17675 4.18251 4.27990 4.28746 4.35559 4.36935 4.48177 4.55956 4.61689 4.68726 4.76113 4.78127 4.91875 4.93852 4.99726 5.17871 5.19446 5.21818 5.39256 5.41473 5.51303 5.56980 5.61977 5.64245 5.72098 5.81907 6.10614 6.31964 6.60808 6.79207 6.84990 7.43491 8.90451 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.003139 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.566673 B = 8917.991406 C = 9541.958453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.255 5.255 3 N -0.264 5.264 4 C 0.051 3.949 5 C -0.026 4.026 6 C -0.111 4.111 7 C -0.120 4.120 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.111 4.111 11 C -0.142 4.142 12 C -0.037 4.037 13 C 0.530 3.470 14 O -0.530 6.530 15 O -0.325 6.325 16 C 0.124 3.876 17 C 0.012 3.988 18 C -0.491 4.491 19 H 0.062 0.938 20 C 0.035 3.965 21 N -0.907 5.907 22 Si 0.941 3.059 23 H -0.258 1.258 24 H -0.286 1.286 25 H -0.287 1.287 26 C -0.188 4.188 27 C -0.184 4.184 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.123 0.877 36 H 0.182 0.818 37 H 0.038 0.962 38 H 0.084 0.916 39 H 0.259 0.741 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.123 14.165 -5.825 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.045 5.045 3 N -0.100 5.100 4 C -0.102 4.102 5 C -0.028 4.028 6 C -0.131 4.131 7 C -0.137 4.137 8 C -0.134 4.134 9 C -0.141 4.141 10 C -0.130 4.130 11 C -0.170 4.170 12 C -0.162 4.162 13 C 0.374 3.626 14 O -0.420 6.420 15 O -0.239 6.239 16 C 0.051 3.949 17 C 0.011 3.989 18 C -0.528 4.528 19 H 0.080 0.920 20 C -0.165 4.165 21 N -0.545 5.545 22 Si 0.767 3.233 23 H -0.181 1.181 24 H -0.212 1.212 25 H -0.213 1.213 26 C -0.226 4.226 27 C -0.221 4.221 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.151 0.849 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.141 0.859 36 H 0.199 0.801 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.491 14.707 -5.659 18.931 hybrid contribution -0.235 -1.000 0.957 1.404 sum 10.256 13.708 -4.702 17.754 Atomic orbital electron populations 1.22591 0.70450 1.07150 1.05537 1.46026 1.08875 1.01378 1.48178 1.73271 1.03717 1.13318 1.19654 1.20677 0.90683 0.91957 1.06875 1.17862 0.89901 0.91681 1.03343 1.21347 0.91012 1.01176 0.99551 1.21403 0.99501 0.93411 0.99429 1.21629 0.97505 0.95956 0.98262 1.21395 0.92333 1.00607 0.99747 1.21316 1.00307 0.91975 0.99414 1.22316 0.95393 0.94412 1.04864 1.20731 0.92396 0.86138 1.16889 1.19988 0.82121 0.87528 0.73003 1.90793 1.56098 1.47173 1.47943 1.86565 1.22610 1.32944 1.81771 1.22670 0.95227 0.76535 1.00499 1.18987 0.89581 0.97691 0.92599 1.20663 1.05570 1.33924 0.92621 0.92011 1.25521 0.95090 0.96017 0.99898 1.69934 1.27789 1.39635 1.17146 0.85754 0.78784 0.79446 0.79270 1.18134 1.21189 1.21275 1.22986 1.02335 0.91602 1.05689 1.22997 1.02531 1.02077 0.94501 0.89866 0.85516 0.87443 0.84862 0.83088 0.83023 0.83530 0.85945 0.80119 0.94400 0.89789 0.93186 0.90242 0.89905 0.89333 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 10.60 127.77 1.35 3.78 16 2 N -0.25 -8.73 3.75 -356.19 -1.34 -10.06 16 3 N -0.26 -8.64 11.58 -48.24 -0.56 -9.20 16 4 C 0.05 1.58 6.99 42.48 0.30 1.88 16 5 C -0.03 -0.67 5.88 -20.04 -0.12 -0.79 16 6 C -0.11 -2.33 9.58 22.48 0.22 -2.11 16 7 C -0.12 -1.89 10.03 22.24 0.22 -1.67 16 8 C -0.12 -1.65 10.04 22.31 0.22 -1.42 16 9 C -0.12 -2.06 10.03 22.24 0.22 -1.83 16 10 C -0.11 -2.50 9.69 22.48 0.22 -2.28 16 11 C -0.14 -4.65 10.18 22.86 0.23 -4.42 16 12 C -0.04 -1.38 6.95 40.70 0.28 -1.10 16 13 C 0.53 23.02 7.93 70.13 0.56 23.58 16 14 O -0.53 -24.97 16.69 19.68 0.33 -24.64 16 15 O -0.32 -14.69 7.45 -57.23 -0.43 -15.12 16 16 C 0.12 5.87 4.56 71.98 0.33 6.20 16 17 C 0.01 0.55 2.12 -52.93 -0.11 0.44 16 18 C -0.49 -24.70 8.77 25.60 0.22 -24.48 16 19 H 0.06 3.06 7.84 -2.91 -0.02 3.04 16 20 C 0.04 1.80 5.19 84.65 0.44 2.24 16 21 N -0.91 -49.61 10.77 21.45 0.23 -49.38 16 22 Si 0.94 41.14 29.55 68.60 2.03 43.16 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 25 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 26 C -0.19 -7.79 9.96 30.62 0.30 -7.49 16 27 C -0.18 -7.12 9.92 30.61 0.30 -6.81 16 28 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 29 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.11 3.43 6.49 -2.39 -0.02 3.42 16 31 H 0.13 2.50 7.10 -2.91 -0.02 2.48 16 32 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.12 2.80 7.86 -2.91 -0.02 2.78 16 36 H 0.18 5.14 7.43 -2.91 -0.02 5.12 16 37 H 0.04 1.69 8.04 -2.38 -0.02 1.67 16 38 H 0.08 4.55 6.03 -2.39 -0.01 4.54 16 39 H 0.26 13.83 8.32 -92.70 -0.77 13.06 16 40 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 42 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 43 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 Total: -1.00 -63.05 371.67 6.49 -56.56 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 1.03 Total: 24.96 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 5.20 Total: -16.28 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -1.66 Total: -68.64 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.10 Total: -39.76 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -63.05 6.49 -56.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.526 kcal (2) G-P(sol) polarization free energy of solvation -63.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds