Wall clock time and date at job start Tue Mar 31 2020 14:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34954 * 126.03669 * 2 1 4 4 C 1.35316 * 107.74264 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.03587 * 179.97438 * 4 3 2 6 6 H 1.09006 * 115.55163 * 334.28062 * 5 4 3 7 7 C 1.52995 * 117.50015 * 188.60586 * 5 4 3 8 8 C 1.52999 * 60.00130 * 252.50930 * 7 5 4 9 9 H 1.09003 * 117.50155 * 107.48860 * 8 7 5 10 10 C 1.50700 * 117.50267 * 252.50759 * 8 7 5 11 11 O 1.20823 * 119.99908 * 68.61945 * 10 8 7 12 12 O 1.34231 * 120.00024 * 248.62480 * 10 8 7 13 13 C 1.45199 * 116.99854 * 179.97438 * 12 10 8 14 14 C 1.50702 * 109.47109 * 179.97438 * 13 12 10 15 15 C 1.38637 * 119.74704 * 269.72507 * 14 13 12 16 16 C 1.37614 * 120.24536 * 179.72001 * 15 14 13 17 17 C 1.40716 * 119.74753 * 0.52874 * 16 15 14 18 18 C 1.41394 * 120.24444 * 179.72265 * 17 16 15 19 19 H 1.08007 * 119.99680 * 204.39953 * 18 17 16 20 20 C 1.39939 * 120.00140 * 24.40479 * 18 17 16 21 21 N 1.30821 * 119.99967 * 17.85749 * 20 18 17 22 22 Si 1.86803 * 120.00132 * 197.85581 * 20 18 17 23 23 H 1.48498 * 109.46790 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47260 * 119.99916 * 22 20 18 25 25 H 1.48506 * 109.47169 * 240.00207 * 22 20 18 26 26 C 1.40715 * 119.50975 * 359.74882 * 17 16 15 27 27 C 1.37619 * 119.74544 * 359.97438 * 26 17 16 28 28 C 1.39865 * 107.92395 * 359.97438 * 4 3 2 29 29 N 1.30835 * 108.20374 * 0.02562 * 28 4 3 30 30 H 1.09004 * 109.46958 * 270.02546 * 1 2 3 31 31 H 1.09000 * 109.46967 * 30.02741 * 1 2 3 32 32 H 1.08998 * 109.47251 * 150.02704 * 1 2 3 33 33 H 1.07996 * 126.12817 * 0.04202 * 3 2 1 34 34 H 1.09001 * 117.50088 * 0.02562 * 7 5 4 35 35 H 1.08997 * 117.50458 * 145.00180 * 7 5 4 36 36 H 1.09003 * 109.47111 * 299.99963 * 13 12 10 37 37 H 1.09000 * 109.47127 * 59.99499 * 13 12 10 38 38 H 1.07995 * 119.87383 * 359.97438 * 15 14 13 39 39 H 1.08007 * 120.12666 * 180.28037 * 16 15 14 40 40 H 0.97007 * 120.00117 * 180.02562 * 21 20 18 41 41 H 1.08004 * 120.12569 * 180.02562 * 26 17 16 42 42 H 1.08001 * 119.87530 * 180.02562 * 27 26 17 43 43 H 1.08006 * 125.89773 * 180.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0013 6 1 4.6331 2.5392 -0.4282 7 6 6.1242 0.8671 -0.2050 8 6 5.7380 1.4065 1.1737 9 1 5.4906 0.6795 1.9474 10 6 6.4339 2.6544 1.6528 11 8 6.2166 3.7127 1.1120 12 8 7.2953 2.5901 2.6803 13 6 7.9292 3.8312 3.0876 14 6 8.8553 3.5655 4.2465 15 6 8.3771 3.6584 5.5445 16 6 9.2123 3.4123 6.6101 17 6 10.5590 3.0762 6.3787 18 6 11.4278 2.8270 7.4660 19 1 12.4932 2.9582 7.3470 20 6 10.9073 2.4102 8.6963 21 7 9.6969 1.9179 8.7615 22 14 11.9406 2.5566 10.2456 23 1 13.2632 3.1397 9.9051 24 1 11.2479 3.4358 11.2214 25 1 12.1326 1.2101 10.8417 26 6 11.0347 2.9906 5.0572 27 6 10.1802 3.2352 4.0066 28 6 3.5347 -0.7321 -0.0003 29 7 2.2892 -1.1328 -0.0002 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8902 -0.5134 33 1 1.9282 2.1193 0.0006 34 1 6.1310 -0.2146 -0.3388 35 1 6.8817 1.4147 -0.7658 36 1 8.4991 4.2392 2.2528 37 1 7.1651 4.5472 3.3903 38 1 7.3443 3.9208 5.7197 39 1 8.8366 3.4808 7.6204 40 1 9.3359 1.6293 9.6144 41 1 12.0664 2.7330 4.8681 42 1 10.5430 3.1697 2.9915 43 1 4.4055 -1.3710 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835273205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:24 Heat of formation + Delta-G solvation = 33.434933 kcal Electronic energy + Delta-G solvation = -25283.182500 eV Core-core repulsion = 21488.683533 eV Total energy + Delta-G solvation = -3794.498967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.54965 -40.18175 -37.85990 -37.10964 -35.71682 -33.85351 -33.32359 -30.83472 -30.41942 -29.35816 -27.55886 -27.03238 -24.97319 -23.37431 -23.18861 -21.29199 -21.07401 -20.44585 -20.02750 -19.75292 -17.69639 -17.38321 -16.96467 -16.40195 -15.92176 -15.70699 -15.32802 -14.72837 -14.68517 -14.35099 -13.92400 -13.69198 -13.53488 -13.16106 -13.09976 -12.84809 -12.59138 -12.38371 -12.15437 -12.04701 -11.98682 -11.73481 -11.18600 -11.12075 -10.97770 -10.86219 -10.77188 -10.64558 -10.42612 -10.20174 -10.09856 -9.70549 -9.68026 -9.46253 -9.21675 -8.52593 -7.55071 -7.43847 -6.85754 -4.45364 1.57151 2.20274 2.24982 2.43714 2.56729 2.96143 3.01686 3.03967 3.08746 3.40019 3.81971 3.86486 4.17500 4.51279 4.54061 4.63098 4.68831 4.76283 4.80938 4.97194 5.02147 5.13142 5.25398 5.38687 5.54076 5.62929 5.68609 5.72605 5.77963 5.85718 6.05776 6.11012 6.26854 6.32733 6.34158 6.68076 6.87415 6.91721 6.98540 7.19660 7.27786 7.40199 7.52956 7.75355 7.97048 8.02384 8.14231 8.20374 8.55146 8.79688 8.87966 10.07995 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.001999 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.090157 B =14003.456361 C =14789.536068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.378 5.378 3 C 0.067 3.933 4 C -0.208 4.208 5 C -0.040 4.040 6 H 0.124 0.876 7 C -0.139 4.139 8 C -0.160 4.160 9 H 0.134 0.866 10 C 0.487 3.513 11 O -0.523 6.523 12 O -0.344 6.344 13 C 0.136 3.864 14 C -0.236 4.236 15 C -0.076 4.076 16 C -0.171 4.171 17 C 0.118 3.882 18 C -0.456 4.456 19 H 0.081 0.919 20 C 0.074 3.926 21 N -0.785 5.785 22 Si 0.910 3.090 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.230 4.230 27 C -0.064 4.064 28 C 0.057 3.943 29 N -0.297 5.297 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.176 0.824 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.282 0.718 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.527 -2.776 -14.484 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.160 5.160 3 C -0.079 4.079 4 C -0.219 4.219 5 C -0.059 4.059 6 H 0.142 0.858 7 C -0.176 4.176 8 C -0.179 4.179 9 H 0.152 0.848 10 C 0.331 3.669 11 O -0.414 6.414 12 O -0.260 6.260 13 C 0.064 3.936 14 C -0.237 4.237 15 C -0.094 4.094 16 C -0.190 4.190 17 C 0.115 3.885 18 C -0.484 4.484 19 H 0.099 0.901 20 C -0.145 4.145 21 N -0.409 5.409 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.249 4.249 27 C -0.082 4.082 28 C -0.130 4.130 29 N -0.118 5.118 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.193 0.807 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -15.700 -3.565 -14.434 21.623 hybrid contribution 0.872 0.787 0.897 1.477 sum -14.829 -2.778 -13.538 20.270 Atomic orbital electron populations 1.21868 0.74085 1.04483 1.03522 1.48460 1.06706 1.03839 1.56983 1.22288 0.90666 0.93506 1.01474 1.19237 0.92954 0.93150 1.16586 1.20277 0.87227 0.99496 0.98909 0.85795 1.23084 0.97918 1.01502 0.95138 1.21933 1.04240 0.97688 0.94037 0.84815 1.22529 0.77120 0.89375 0.77901 1.90601 1.62553 1.31484 1.56731 1.86720 1.52808 1.40175 1.46347 1.21738 0.93864 0.82338 0.95653 1.18687 0.93616 1.19364 0.92025 1.20540 0.97407 0.99078 0.92390 1.21295 0.94752 1.05143 0.97815 1.17696 0.92406 0.86709 0.91706 1.19703 0.95183 1.39198 0.94355 0.90128 1.25977 0.95219 0.92295 1.00961 1.69839 1.15920 1.27472 1.27702 0.86238 0.80946 0.78838 0.80608 1.18281 1.19600 1.19890 1.20961 0.98752 1.12489 0.92729 1.20393 0.93107 0.97746 0.96951 1.23796 0.95259 0.94423 0.99476 1.77379 1.01610 1.08256 1.24594 0.90640 0.89409 0.89281 0.80680 0.87247 0.87694 0.92109 0.92080 0.89344 0.86240 0.90694 0.88704 0.89277 0.79901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.47 59.85 0.69 1.18 16 2 N -0.38 -3.48 4.01 -68.16 -0.27 -3.76 16 3 C 0.07 0.60 11.40 -17.22 -0.20 0.40 16 4 C -0.21 -2.10 5.76 -105.06 -0.61 -2.70 16 5 C -0.04 -0.41 5.76 -91.77 -0.53 -0.94 16 6 H 0.12 1.34 7.67 -51.93 -0.40 0.94 16 7 C -0.14 -1.35 9.73 -26.73 -0.26 -1.61 16 8 C -0.16 -1.98 6.00 -91.77 -0.55 -2.53 16 9 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 10 C 0.49 8.00 7.74 36.01 0.28 8.28 16 11 O -0.52 -9.42 16.01 -18.75 -0.30 -9.72 16 12 O -0.34 -6.56 10.20 -39.26 -0.40 -6.96 16 13 C 0.14 2.64 5.58 36.01 0.20 2.84 16 14 C -0.24 -5.27 5.54 -104.33 -0.58 -5.85 16 15 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 16 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 17 C 0.12 3.10 5.57 -106.83 -0.60 2.51 16 18 C -0.46 -11.85 9.05 -37.74 -0.34 -12.20 16 19 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 20 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 21 N -0.78 -19.94 10.95 55.55 0.61 -19.33 16 22 Si 0.91 18.20 29.60 -169.99 -5.03 13.17 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 27 C -0.06 -1.43 9.67 -39.66 -0.38 -1.82 16 28 C 0.06 0.58 11.35 -17.37 -0.20 0.38 16 29 N -0.30 -3.41 12.58 30.62 0.39 -3.02 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.11 0.82 6.97 -51.93 -0.36 0.46 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 37 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 38 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 39 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 40 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 41 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.18 1.43 7.19 -52.48 -0.38 1.05 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -31.53 375.90 -9.26 -40.79 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.65 Total: 6.38 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -4.26 Total: -23.22 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.72 Total: -26.11 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.70 Total: -16.68 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.53 -9.26 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.225 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds