Wall clock time and date at job start Tue Mar 31 2020 14:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34954 * 126.03669 * 2 1 4 4 C 1.35316 * 107.74264 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.03587 * 179.97438 * 4 3 2 6 6 H 1.09006 * 115.55163 * 334.28062 * 5 4 3 7 7 C 1.52995 * 117.50015 * 188.60586 * 5 4 3 8 8 C 1.52999 * 60.00130 * 252.50930 * 7 5 4 9 9 H 1.09003 * 117.50155 * 107.48860 * 8 7 5 10 10 C 1.50700 * 117.50267 * 252.50759 * 8 7 5 11 11 O 1.20823 * 119.99908 * 68.61945 * 10 8 7 12 12 O 1.34231 * 120.00024 * 248.62480 * 10 8 7 13 13 C 1.45199 * 116.99854 * 179.97438 * 12 10 8 14 14 C 1.50702 * 109.47109 * 179.97438 * 13 12 10 15 15 C 1.38637 * 119.74704 * 269.72507 * 14 13 12 16 16 C 1.37614 * 120.24536 * 179.72001 * 15 14 13 17 17 C 1.40716 * 119.74753 * 0.52874 * 16 15 14 18 18 C 1.41394 * 120.24444 * 179.72265 * 17 16 15 19 19 H 1.08007 * 119.99680 * 204.39953 * 18 17 16 20 20 C 1.39939 * 120.00140 * 24.40479 * 18 17 16 21 21 N 1.30821 * 119.99967 * 17.85749 * 20 18 17 22 22 Si 1.86803 * 120.00132 * 197.85581 * 20 18 17 23 23 H 1.48498 * 109.46790 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47260 * 119.99916 * 22 20 18 25 25 H 1.48506 * 109.47169 * 240.00207 * 22 20 18 26 26 C 1.40715 * 119.50975 * 359.74882 * 17 16 15 27 27 C 1.37619 * 119.74544 * 359.97438 * 26 17 16 28 28 C 1.39865 * 107.92395 * 359.97438 * 4 3 2 29 29 N 1.30835 * 108.20374 * 0.02562 * 28 4 3 30 30 H 1.09004 * 109.46958 * 270.02546 * 1 2 3 31 31 H 1.09000 * 109.46967 * 30.02741 * 1 2 3 32 32 H 1.08998 * 109.47251 * 150.02704 * 1 2 3 33 33 H 1.07996 * 126.12817 * 0.04202 * 3 2 1 34 34 H 1.09001 * 117.50088 * 0.02562 * 7 5 4 35 35 H 1.08997 * 117.50458 * 145.00180 * 7 5 4 36 36 H 1.09003 * 109.47111 * 299.99963 * 13 12 10 37 37 H 1.09000 * 109.47127 * 59.99499 * 13 12 10 38 38 H 1.07995 * 119.87383 * 359.97438 * 15 14 13 39 39 H 1.08007 * 120.12666 * 180.28037 * 16 15 14 40 40 H 0.97007 * 120.00117 * 180.02562 * 21 20 18 41 41 H 1.08004 * 120.12569 * 180.02562 * 26 17 16 42 42 H 1.08001 * 119.87530 * 180.02562 * 27 26 17 43 43 H 1.08006 * 125.89773 * 180.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0013 6 1 4.6331 2.5392 -0.4282 7 6 6.1242 0.8671 -0.2050 8 6 5.7380 1.4065 1.1737 9 1 5.4906 0.6795 1.9474 10 6 6.4339 2.6544 1.6528 11 8 6.2166 3.7127 1.1120 12 8 7.2953 2.5901 2.6803 13 6 7.9292 3.8312 3.0876 14 6 8.8553 3.5655 4.2465 15 6 8.3771 3.6584 5.5445 16 6 9.2123 3.4123 6.6101 17 6 10.5590 3.0762 6.3787 18 6 11.4278 2.8270 7.4660 19 1 12.4932 2.9582 7.3470 20 6 10.9073 2.4102 8.6963 21 7 9.6969 1.9179 8.7615 22 14 11.9406 2.5566 10.2456 23 1 13.2632 3.1397 9.9051 24 1 11.2479 3.4358 11.2214 25 1 12.1326 1.2101 10.8417 26 6 11.0347 2.9906 5.0572 27 6 10.1802 3.2352 4.0066 28 6 3.5347 -0.7321 -0.0003 29 7 2.2892 -1.1328 -0.0002 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8902 -0.5134 33 1 1.9282 2.1193 0.0006 34 1 6.1310 -0.2146 -0.3388 35 1 6.8817 1.4147 -0.7658 36 1 8.4991 4.2392 2.2528 37 1 7.1651 4.5472 3.3903 38 1 7.3443 3.9208 5.7197 39 1 8.8366 3.4808 7.6204 40 1 9.3359 1.6293 9.6144 41 1 12.0664 2.7330 4.8681 42 1 10.5430 3.1697 2.9915 43 1 4.4055 -1.3710 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835273205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:23 Heat of formation + Delta-G solvation = 18.426643 kcal Electronic energy + Delta-G solvation = -25283.833308 eV Core-core repulsion = 21488.683533 eV Total energy + Delta-G solvation = -3795.149775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.26483 -41.47405 -39.55167 -38.30151 -37.03270 -35.68311 -33.92532 -32.60742 -31.24397 -31.16135 -29.13388 -27.76379 -26.32147 -24.88618 -23.93604 -22.95601 -21.95780 -21.87538 -21.48301 -20.60164 -19.27581 -18.84481 -17.75962 -17.70803 -17.39303 -17.03973 -16.30932 -16.09607 -15.67744 -15.53676 -15.32774 -15.15511 -14.71656 -14.26255 -13.93658 -13.90884 -13.84524 -13.63873 -13.54412 -13.39671 -13.28583 -12.84418 -12.81737 -12.68058 -12.60677 -12.11320 -11.90522 -11.72593 -11.67874 -11.52326 -11.46212 -11.35039 -11.27167 -11.04639 -10.38868 -9.44723 -9.34751 -9.23475 -8.69147 -6.39973 0.71777 0.89289 1.10312 1.12196 1.38222 1.42247 1.54400 1.65000 1.68326 2.01758 2.19584 2.71764 2.96519 3.51488 3.65592 3.74629 3.87357 3.96691 4.03990 4.09713 4.11426 4.19564 4.34862 4.36602 4.44845 4.47386 4.53368 4.55202 4.70553 4.74890 4.83955 4.98345 5.00277 5.08517 5.11739 5.28187 5.30091 5.39100 5.54249 5.64816 5.65361 5.88284 6.05339 6.10164 6.14196 6.31452 6.64007 6.70775 6.80199 6.88142 6.96852 8.27687 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.001999 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.090157 B =14003.456361 C =14789.536068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.381 5.381 3 C 0.070 3.930 4 C -0.227 4.227 5 C -0.024 4.024 6 H 0.121 0.879 7 C -0.123 4.123 8 C -0.177 4.177 9 H 0.136 0.864 10 C 0.487 3.513 11 O -0.541 6.541 12 O -0.361 6.361 13 C 0.140 3.860 14 C -0.231 4.231 15 C -0.082 4.082 16 C -0.194 4.194 17 C 0.086 3.914 18 C -0.491 4.491 19 H 0.080 0.920 20 C 0.033 3.967 21 N -0.819 5.819 22 Si 0.986 3.014 23 H -0.256 1.256 24 H -0.264 1.264 25 H -0.265 1.265 26 C -0.244 4.244 27 C -0.065 4.065 28 C 0.051 3.949 29 N -0.335 5.335 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.203 0.797 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.290 0.710 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.292 -2.864 -15.619 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.162 5.162 3 C -0.077 4.077 4 C -0.239 4.239 5 C -0.044 4.044 6 H 0.139 0.861 7 C -0.160 4.160 8 C -0.197 4.197 9 H 0.154 0.846 10 C 0.333 3.667 11 O -0.432 6.432 12 O -0.278 6.278 13 C 0.068 3.932 14 C -0.232 4.232 15 C -0.100 4.100 16 C -0.214 4.214 17 C 0.083 3.917 18 C -0.520 4.520 19 H 0.098 0.902 20 C -0.182 4.182 21 N -0.444 5.444 22 Si 0.806 3.194 23 H -0.180 1.180 24 H -0.188 1.188 25 H -0.190 1.190 26 C -0.263 4.263 27 C -0.083 4.083 28 C -0.134 4.134 29 N -0.157 5.157 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.110 0.890 33 H 0.220 0.780 34 H 0.152 0.848 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.137 0.863 43 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -16.491 -3.665 -15.593 22.990 hybrid contribution 0.950 0.828 1.082 1.661 sum -15.541 -2.837 -14.511 21.451 Atomic orbital electron populations 1.22203 0.71978 1.06073 1.04515 1.48814 1.08006 1.03344 1.56073 1.22784 0.90495 0.94621 0.99828 1.19300 0.93278 0.93108 1.18203 1.20212 0.87691 0.99555 0.96901 0.86138 1.23276 0.97405 1.02994 0.92284 1.21980 1.05998 0.96371 0.95308 0.84586 1.23213 0.76271 0.90511 0.76754 1.90587 1.63061 1.32513 1.57080 1.86682 1.53747 1.39620 1.47707 1.21577 0.93814 0.82768 0.95017 1.19014 0.94272 1.17342 0.92591 1.20776 0.97990 0.98625 0.92605 1.21270 0.95293 1.06994 0.97820 1.18064 0.92997 0.87661 0.92933 1.19949 0.95293 1.41068 0.95700 0.90150 1.26850 0.96423 0.91200 1.03770 1.69886 1.17514 1.28017 1.28970 0.85108 0.79067 0.79102 0.76143 1.17970 1.18832 1.18982 1.21181 0.99643 1.12891 0.92635 1.20721 0.92986 0.96656 0.97960 1.24123 0.95563 0.94859 0.98870 1.77321 1.02412 1.09855 1.26071 0.89909 0.86585 0.89019 0.78020 0.84817 0.87434 0.90710 0.91468 0.87712 0.87777 0.89890 0.87804 0.86294 0.78327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.47 127.77 1.47 2.18 16 2 N -0.38 -6.35 4.01 -369.56 -1.48 -7.83 16 3 C 0.07 1.10 11.40 83.54 0.95 2.05 16 4 C -0.23 -4.17 5.76 -20.15 -0.12 -4.28 16 5 C -0.02 -0.46 5.76 -11.54 -0.07 -0.53 16 6 H 0.12 2.38 7.67 -2.38 -0.02 2.37 16 7 C -0.12 -2.09 9.73 30.59 0.30 -1.80 16 8 C -0.18 -4.13 6.00 -11.54 -0.07 -4.20 16 9 H 0.14 3.10 8.14 -2.39 -0.02 3.08 16 10 C 0.49 15.36 7.74 71.24 0.55 15.91 16 11 O -0.54 -18.74 16.01 21.97 0.35 -18.39 16 12 O -0.36 -13.32 10.20 -51.43 -0.52 -13.84 16 13 C 0.14 5.25 5.58 71.24 0.40 5.65 16 14 C -0.23 -10.18 5.54 -19.67 -0.11 -10.28 16 15 C -0.08 -3.88 9.67 22.22 0.21 -3.66 16 16 C -0.19 -10.36 8.70 22.73 0.20 -10.17 16 17 C 0.09 4.67 5.57 -21.29 -0.12 4.55 16 18 C -0.49 -26.34 9.05 23.46 0.21 -26.12 16 19 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 20 C 0.03 1.67 5.14 85.26 0.44 2.11 16 21 N -0.82 -42.65 10.95 21.82 0.24 -42.41 16 22 Si 0.99 37.59 29.60 68.60 2.03 39.62 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 25 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 26 C -0.24 -12.02 9.80 22.73 0.22 -11.80 16 27 C -0.07 -2.89 9.67 22.22 0.21 -2.67 16 28 C 0.05 0.97 11.35 85.24 0.97 1.94 16 29 N -0.33 -7.30 12.58 -57.02 -0.72 -8.02 16 30 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.13 1.62 6.97 -2.39 -0.02 1.60 16 35 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 37 H 0.07 2.41 8.07 -2.39 -0.02 2.40 16 38 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 39 H 0.10 5.77 6.16 -2.91 -0.02 5.75 16 40 H 0.29 13.56 8.30 -92.70 -0.77 12.79 16 41 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 42 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 43 H 0.20 2.76 7.19 -2.91 -0.02 2.74 16 Total: -1.00 -69.24 375.90 6.57 -62.67 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 1.03 Total: 29.30 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 5.65 Total: -41.11 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -1.96 Total: -58.26 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.17 Total: -32.23 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -69.24 6.57 -62.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.096 kcal (2) G-P(sol) polarization free energy of solvation -69.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds