Wall clock time and date at job start Tue Mar 31 2020 14:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28437 * 125.19784 * 2 1 4 4 C 1.30879 * 110.94522 * 180.02562 * 3 2 1 5 5 C 1.39640 * 107.87604 * 0.02562 * 4 3 2 6 6 C 1.50706 * 127.31729 * 179.97438 * 5 4 3 7 7 C 1.52998 * 117.50010 * 351.40862 * 6 5 4 8 8 C 1.53005 * 60.00171 * 107.48447 * 7 6 5 9 9 C 1.36654 * 125.19423 * 180.29324 * 2 1 3 10 10 C 1.47009 * 126.89620 * 359.97438 * 9 2 1 11 11 O 1.21547 * 120.00026 * 180.16883 * 10 9 2 12 12 O 1.34820 * 119.99589 * 0.17574 * 10 9 2 13 13 C 1.45204 * 116.99511 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46983 * 179.97438 * 13 12 10 15 15 C 1.38631 * 119.75305 * 269.73280 * 14 13 12 16 16 C 1.37613 * 120.25247 * 179.72390 * 15 14 13 17 17 C 1.40721 * 119.74399 * 0.56084 * 16 15 14 18 18 C 1.41391 * 120.24396 * 179.68507 * 17 16 15 19 19 H 1.08000 * 119.99956 * 155.31880 * 18 17 16 20 20 C 1.39938 * 120.00364 * 335.31002 * 18 17 16 21 21 N 1.30826 * 120.00300 * 342.23687 * 20 18 17 22 22 Si 1.86807 * 120.00253 * 162.23097 * 20 18 17 23 23 H 1.48501 * 109.46802 * 94.66735 * 22 20 18 24 24 H 1.48500 * 109.47196 * 214.66833 * 22 20 18 25 25 H 1.48500 * 109.47089 * 334.67222 * 22 20 18 26 26 C 1.40714 * 119.50745 * 359.70908 * 17 16 15 27 27 C 1.37617 * 119.74833 * 359.97438 * 26 17 16 28 28 H 1.09001 * 109.47632 * 90.02288 * 1 2 3 29 29 H 1.09007 * 109.47573 * 210.02824 * 1 2 3 30 30 H 1.09000 * 109.47133 * 330.02288 * 1 2 3 31 31 H 1.07999 * 126.06261 * 179.97438 * 4 3 2 32 32 H 1.08997 * 115.56182 * 205.71137 * 6 5 4 33 33 H 1.09000 * 117.49752 * 214.97403 * 7 6 5 34 34 H 1.09000 * 117.49910 * 359.97438 * 7 6 5 35 35 H 1.08996 * 117.49805 * 252.50756 * 8 7 6 36 36 H 1.09003 * 117.49663 * 107.48937 * 8 7 6 37 37 H 1.08998 * 109.47100 * 299.99684 * 13 12 10 38 38 H 1.08996 * 109.47366 * 60.00397 * 13 12 10 39 39 H 1.08005 * 119.87288 * 359.96718 * 15 14 13 40 40 H 1.08002 * 120.13009 * 180.27445 * 16 15 14 41 41 H 0.96993 * 120.00692 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.12359 * 179.97438 * 26 17 16 43 43 H 1.08001 * 119.87447 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0495 0.0000 4 6 3.4738 0.7273 -0.0005 5 6 3.5620 -0.6663 -0.0015 6 6 4.8159 -1.5023 -0.0030 7 6 6.1480 -0.7776 -0.2062 8 6 5.7806 -1.3309 1.1722 9 6 2.2526 -1.1167 -0.0057 10 6 1.8005 -2.5156 -0.0123 11 8 2.6152 -3.4176 -0.0139 12 8 0.4822 -2.7978 -0.0168 13 6 0.1086 -4.2010 -0.0238 14 6 -1.3936 -4.3208 -0.0274 15 6 -2.0814 -4.3865 1.1744 16 6 -3.4536 -4.4903 1.1832 17 6 -4.1577 -4.5416 -0.0341 18 6 -5.5670 -4.6550 -0.0374 19 1 -6.1349 -4.3051 -0.8869 20 6 -6.2262 -5.2206 1.0598 21 7 -5.5604 -5.9493 1.9184 22 14 -8.0567 -4.9350 1.2987 23 1 -8.8157 -6.0636 0.7024 24 1 -8.3588 -4.8472 2.7500 25 1 -8.4509 -3.6672 0.6334 26 6 -3.4486 -4.4798 -1.2480 27 6 -2.0770 -4.3696 -1.2327 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.3049 1.4170 -0.0011 32 1 4.7154 -2.5001 -0.4301 33 1 6.9239 -1.2986 -0.7671 34 1 6.1174 0.3038 -0.3392 35 1 5.5084 -0.6134 1.9463 36 1 6.3148 -2.2158 1.5181 37 1 0.5138 -4.6804 -0.9149 38 1 0.5094 -4.6882 0.8650 39 1 -1.5385 -4.3521 2.1075 40 1 -3.9878 -4.5369 2.1207 41 1 -6.0171 -6.3411 2.6791 42 1 -3.9789 -4.5188 -2.1880 43 1 -1.5307 -4.3224 -2.1632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849925117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:08 Heat of formation + Delta-G solvation = 32.577013 kcal Electronic energy + Delta-G solvation = -26353.813101 eV Core-core repulsion = 22559.276932 eV Total energy + Delta-G solvation = -3794.536169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.70427 -39.90544 -37.77314 -37.41465 -36.11474 -33.96457 -33.20725 -31.29415 -30.65827 -29.45383 -27.44572 -27.11272 -24.69691 -23.57322 -22.87832 -22.46034 -21.17242 -20.47476 -20.15649 -19.85038 -18.03058 -17.46838 -16.71907 -16.59484 -15.72877 -15.63372 -15.59423 -15.33806 -14.57466 -14.31460 -14.03715 -13.79277 -13.63889 -13.00310 -12.95018 -12.71649 -12.60007 -12.43939 -12.12341 -12.06093 -11.68578 -11.63023 -11.34027 -11.19256 -11.12917 -10.91371 -10.71624 -10.69345 -10.54590 -10.28771 -10.28521 -9.78247 -9.55231 -9.34398 -9.28684 -8.70577 -7.65195 -7.54533 -6.94546 -4.54132 0.99384 2.24668 2.39001 2.41997 2.86243 2.92230 2.93147 2.97961 3.02716 3.24626 3.79841 3.83877 4.23622 4.41364 4.58769 4.76369 4.87886 4.93238 5.05511 5.15379 5.20495 5.35133 5.47629 5.51731 5.56852 5.58679 5.63855 5.68893 5.76606 5.96230 5.99197 6.16859 6.18513 6.23274 6.28777 6.55598 6.65666 6.79669 6.90217 7.09608 7.17964 7.43345 7.64796 7.77692 7.88025 7.92088 7.96734 8.11288 8.45947 8.70831 8.78412 9.99432 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.002404 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.165300 B =11643.951018 C =12137.956980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.259 5.259 3 N -0.267 5.267 4 C -0.008 4.008 5 C -0.092 4.092 6 C -0.083 4.083 7 C -0.173 4.173 8 C -0.168 4.168 9 C -0.022 4.022 10 C 0.533 3.467 11 O -0.497 6.497 12 O -0.352 6.352 13 C 0.137 3.863 14 C -0.239 4.239 15 C -0.075 4.075 16 C -0.171 4.171 17 C 0.119 3.881 18 C -0.455 4.455 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.784 5.784 22 Si 0.909 3.091 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.230 4.230 27 C -0.062 4.062 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.186 0.814 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.283 0.717 42 H 0.095 0.905 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.856 9.335 -1.055 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.049 5.049 3 N -0.100 5.100 4 C -0.183 4.183 5 C -0.102 4.102 6 C -0.102 4.102 7 C -0.210 4.210 8 C -0.205 4.205 9 C -0.147 4.147 10 C 0.376 3.624 11 O -0.385 6.385 12 O -0.268 6.268 13 C 0.066 3.934 14 C -0.240 4.240 15 C -0.093 4.093 16 C -0.190 4.190 17 C 0.117 3.883 18 C -0.483 4.483 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.409 5.409 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.250 4.250 27 C -0.080 4.080 28 H 0.108 0.892 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.203 0.797 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.103 9.740 -0.836 16.348 hybrid contribution -0.375 -0.784 0.155 0.883 sum 12.728 8.956 -0.681 15.578 Atomic orbital electron populations 1.22490 0.71576 1.06417 1.05366 1.45790 1.08188 1.01859 1.49066 1.73177 1.03987 1.13994 1.18891 1.23355 0.93529 0.93907 1.07489 1.19869 0.91546 0.93514 1.05292 1.20388 0.86186 0.99619 1.04032 1.22998 0.97698 1.00438 0.99915 1.22990 1.02496 1.03354 0.91637 1.20518 0.91063 0.86633 1.16464 1.19680 0.82156 0.86933 0.73608 1.90828 1.55042 1.46457 1.46139 1.86772 1.23385 1.33698 1.82993 1.21798 0.94162 0.76167 1.01296 1.18623 0.90780 1.20480 0.94133 1.20536 0.94710 0.99010 0.95077 1.21296 0.92366 1.06552 0.98781 1.17693 0.93240 0.86448 0.90942 1.19686 0.91939 1.34417 1.02286 0.90123 1.25982 1.01249 0.92494 0.94671 1.69814 1.38760 1.21314 1.10963 0.86276 0.81751 0.80104 0.78552 1.19406 1.19876 1.18269 1.20954 0.93032 1.13871 0.97142 1.20389 0.94298 0.98197 0.95165 0.89209 0.86643 0.88505 0.79718 0.85654 0.88400 0.88596 0.88722 0.88401 0.91785 0.91710 0.89320 0.86285 0.90553 0.88700 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.80 59.84 0.65 1.58 16 2 N -0.26 -3.58 3.75 -63.90 -0.24 -3.81 16 3 N -0.27 -3.58 11.90 30.58 0.36 -3.22 16 4 C -0.01 -0.09 11.41 -17.43 -0.20 -0.29 16 5 C -0.09 -1.21 5.94 -104.01 -0.62 -1.82 16 6 C -0.08 -0.96 5.69 -91.77 -0.52 -1.48 16 7 C -0.17 -1.46 10.05 -26.73 -0.27 -1.73 16 8 C -0.17 -1.57 10.23 -26.73 -0.27 -1.85 16 9 C -0.02 -0.32 6.96 -82.08 -0.57 -0.89 16 10 C 0.53 8.79 7.93 34.28 0.27 9.07 16 11 O -0.50 -8.86 14.93 -19.30 -0.29 -9.15 16 12 O -0.35 -5.97 7.68 -40.82 -0.31 -6.29 16 13 C 0.14 2.46 5.59 36.01 0.20 2.66 16 14 C -0.24 -4.94 5.54 -104.33 -0.58 -5.52 16 15 C -0.07 -1.64 9.67 -39.66 -0.38 -2.03 16 16 C -0.17 -4.18 8.70 -38.87 -0.34 -4.52 16 17 C 0.12 3.01 5.57 -106.82 -0.60 2.41 16 18 C -0.45 -11.39 9.05 -37.75 -0.34 -11.73 16 19 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 20 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 21 N -0.78 -19.23 10.97 55.55 0.61 -18.62 16 22 Si 0.91 17.61 29.60 -169.99 -5.03 12.58 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 26 C -0.23 -5.33 9.80 -38.87 -0.38 -5.71 16 27 C -0.06 -1.31 9.67 -39.66 -0.38 -1.69 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.12 1.48 6.17 -51.93 -0.32 1.16 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.19 1.54 7.33 -52.49 -0.38 1.16 16 32 H 0.13 1.64 6.85 -51.93 -0.36 1.29 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.69 7.12 -51.93 -0.37 0.32 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 38 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 39 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.12 3.01 6.18 -52.49 -0.32 2.69 16 41 H 0.28 6.29 8.30 -40.82 -0.34 5.96 16 42 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 43 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -27.75 368.78 -9.29 -37.04 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.53 Total: 7.75 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -4.42 Total: -21.84 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.73 Total: -25.65 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.60 Total: -15.44 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.75 -9.29 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849925117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.615 kcal (2) G-P(sol) polarization free energy of solvation -27.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds