Wall clock time and date at job start Tue Mar 31 2020 14:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28437 * 125.19784 * 2 1 4 4 C 1.30879 * 110.94522 * 180.02562 * 3 2 1 5 5 C 1.39640 * 107.87604 * 0.02562 * 4 3 2 6 6 C 1.50706 * 127.31729 * 179.97438 * 5 4 3 7 7 C 1.52998 * 117.50010 * 351.40862 * 6 5 4 8 8 C 1.53005 * 60.00171 * 107.48447 * 7 6 5 9 9 C 1.36654 * 125.19423 * 180.29324 * 2 1 3 10 10 C 1.47009 * 126.89620 * 359.97438 * 9 2 1 11 11 O 1.21547 * 120.00026 * 180.16883 * 10 9 2 12 12 O 1.34820 * 119.99589 * 0.17574 * 10 9 2 13 13 C 1.45204 * 116.99511 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46983 * 179.97438 * 13 12 10 15 15 C 1.38631 * 119.75305 * 269.73280 * 14 13 12 16 16 C 1.37613 * 120.25247 * 179.72390 * 15 14 13 17 17 C 1.40721 * 119.74399 * 0.56084 * 16 15 14 18 18 C 1.41391 * 120.24396 * 179.68507 * 17 16 15 19 19 H 1.08000 * 119.99956 * 155.31880 * 18 17 16 20 20 C 1.39938 * 120.00364 * 335.31002 * 18 17 16 21 21 N 1.30826 * 120.00300 * 342.23687 * 20 18 17 22 22 Si 1.86807 * 120.00253 * 162.23097 * 20 18 17 23 23 H 1.48501 * 109.46802 * 94.66735 * 22 20 18 24 24 H 1.48500 * 109.47196 * 214.66833 * 22 20 18 25 25 H 1.48500 * 109.47089 * 334.67222 * 22 20 18 26 26 C 1.40714 * 119.50745 * 359.70908 * 17 16 15 27 27 C 1.37617 * 119.74833 * 359.97438 * 26 17 16 28 28 H 1.09001 * 109.47632 * 90.02288 * 1 2 3 29 29 H 1.09007 * 109.47573 * 210.02824 * 1 2 3 30 30 H 1.09000 * 109.47133 * 330.02288 * 1 2 3 31 31 H 1.07999 * 126.06261 * 179.97438 * 4 3 2 32 32 H 1.08997 * 115.56182 * 205.71137 * 6 5 4 33 33 H 1.09000 * 117.49752 * 214.97403 * 7 6 5 34 34 H 1.09000 * 117.49910 * 359.97438 * 7 6 5 35 35 H 1.08996 * 117.49805 * 252.50756 * 8 7 6 36 36 H 1.09003 * 117.49663 * 107.48937 * 8 7 6 37 37 H 1.08998 * 109.47100 * 299.99684 * 13 12 10 38 38 H 1.08996 * 109.47366 * 60.00397 * 13 12 10 39 39 H 1.08005 * 119.87288 * 359.96718 * 15 14 13 40 40 H 1.08002 * 120.13009 * 180.27445 * 16 15 14 41 41 H 0.96993 * 120.00692 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.12359 * 179.97438 * 26 17 16 43 43 H 1.08001 * 119.87447 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0495 0.0000 4 6 3.4738 0.7273 -0.0005 5 6 3.5620 -0.6663 -0.0015 6 6 4.8159 -1.5023 -0.0030 7 6 6.1480 -0.7776 -0.2062 8 6 5.7806 -1.3309 1.1722 9 6 2.2526 -1.1167 -0.0057 10 6 1.8005 -2.5156 -0.0123 11 8 2.6152 -3.4176 -0.0139 12 8 0.4822 -2.7978 -0.0168 13 6 0.1086 -4.2010 -0.0238 14 6 -1.3936 -4.3208 -0.0274 15 6 -2.0814 -4.3865 1.1744 16 6 -3.4536 -4.4903 1.1832 17 6 -4.1577 -4.5416 -0.0341 18 6 -5.5670 -4.6550 -0.0374 19 1 -6.1349 -4.3051 -0.8869 20 6 -6.2262 -5.2206 1.0598 21 7 -5.5604 -5.9493 1.9184 22 14 -8.0567 -4.9350 1.2987 23 1 -8.8157 -6.0636 0.7024 24 1 -8.3588 -4.8472 2.7500 25 1 -8.4509 -3.6672 0.6334 26 6 -3.4486 -4.4798 -1.2480 27 6 -2.0770 -4.3696 -1.2327 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.3049 1.4170 -0.0011 32 1 4.7154 -2.5001 -0.4301 33 1 6.9239 -1.2986 -0.7671 34 1 6.1174 0.3038 -0.3392 35 1 5.5084 -0.6134 1.9463 36 1 6.3148 -2.2158 1.5181 37 1 0.5138 -4.6804 -0.9149 38 1 0.5094 -4.6882 0.8650 39 1 -1.5385 -4.3521 2.1075 40 1 -3.9878 -4.5369 2.1207 41 1 -6.0171 -6.3411 2.6791 42 1 -3.9789 -4.5188 -2.1880 43 1 -1.5307 -4.3224 -2.1632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849925117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:07 Heat of formation + Delta-G solvation = 21.148922 kcal Electronic energy + Delta-G solvation = -26354.308661 eV Core-core repulsion = 22559.276932 eV Total energy + Delta-G solvation = -3795.031728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.71007 -41.25670 -39.48546 -38.27306 -37.47114 -35.70960 -34.17814 -32.72885 -31.99566 -31.24057 -29.03733 -28.11172 -26.13810 -24.82930 -23.96703 -23.17552 -22.96371 -21.88799 -21.54148 -20.85061 -19.28662 -19.16528 -18.03899 -17.80258 -17.22741 -16.81721 -16.66378 -16.45184 -15.98115 -15.65875 -15.44346 -15.14772 -14.88800 -14.33890 -14.13212 -14.07360 -13.87556 -13.74468 -13.67286 -13.34419 -13.06510 -12.96390 -12.79429 -12.42279 -12.31846 -12.27377 -12.05563 -11.83350 -11.76253 -11.66779 -11.50994 -11.31281 -11.17742 -11.04689 -10.37776 -9.64360 -9.45285 -9.35409 -8.70944 -6.41005 -0.13713 0.67065 1.10064 1.32536 1.38480 1.43621 1.44447 1.52902 1.73765 1.78764 2.18187 2.68862 3.06511 3.34226 3.46042 3.70711 3.92819 3.94523 4.04624 4.08606 4.14704 4.18944 4.28289 4.30017 4.43318 4.46330 4.47502 4.53966 4.70555 4.82689 4.86613 4.99963 5.06465 5.10682 5.18649 5.29309 5.30705 5.35481 5.37715 5.41058 5.60091 5.63646 5.86575 6.04491 6.12830 6.30822 6.51902 6.63084 6.87341 6.91005 6.95573 8.25859 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.002404 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.165300 B =11643.951018 C =12137.956980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.265 5.265 3 N -0.274 5.274 4 C -0.002 4.002 5 C -0.085 4.085 6 C -0.115 4.115 7 C -0.148 4.148 8 C -0.164 4.164 9 C -0.054 4.054 10 C 0.536 3.464 11 O -0.515 6.515 12 O -0.352 6.352 13 C 0.143 3.857 14 C -0.228 4.228 15 C -0.078 4.078 16 C -0.192 4.192 17 C 0.090 3.910 18 C -0.491 4.491 19 H 0.080 0.920 20 C 0.036 3.964 21 N -0.818 5.818 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.266 1.266 25 H -0.257 1.257 26 C -0.244 4.244 27 C -0.062 4.062 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.222 0.778 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.291 0.709 42 H 0.102 0.898 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.503 10.884 -1.306 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.055 5.055 3 N -0.108 5.108 4 C -0.176 4.176 5 C -0.096 4.096 6 C -0.134 4.134 7 C -0.185 4.185 8 C -0.201 4.201 9 C -0.178 4.178 10 C 0.380 3.620 11 O -0.404 6.404 12 O -0.269 6.269 13 C 0.071 3.929 14 C -0.229 4.229 15 C -0.096 4.096 16 C -0.212 4.212 17 C 0.087 3.913 18 C -0.520 4.520 19 H 0.098 0.902 20 C -0.180 4.180 21 N -0.443 5.443 22 Si 0.802 3.198 23 H -0.187 1.187 24 H -0.190 1.190 25 H -0.181 1.181 26 C -0.263 4.263 27 C -0.080 4.080 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.238 0.762 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.761 11.292 -1.094 18.617 hybrid contribution -0.648 -1.221 0.203 1.397 sum 14.113 10.071 -0.892 17.361 Atomic orbital electron populations 1.22564 0.70924 1.06622 1.05901 1.45931 1.08674 1.01559 1.49353 1.73175 1.04770 1.13945 1.18947 1.23931 0.93848 0.93788 1.06070 1.20215 0.91400 0.94371 1.03603 1.20370 0.87102 0.99216 1.06717 1.23148 0.95280 1.01390 0.98680 1.23075 1.01238 1.03839 0.91926 1.20521 0.92198 0.86057 1.19050 1.19896 0.81457 0.87668 0.72935 1.90816 1.55195 1.47165 1.47201 1.86744 1.24150 1.32680 1.83299 1.21631 0.92192 0.76958 1.02158 1.18879 0.92310 1.18215 0.93489 1.20748 0.94033 0.98306 0.96515 1.21253 0.93415 1.08408 0.98115 1.18034 0.93961 0.87412 0.91884 1.19924 0.92412 1.36216 1.03458 0.90218 1.26802 1.05735 0.91589 0.93892 1.69861 1.40725 1.22079 1.11639 0.85194 0.75922 0.79961 0.78703 1.18717 1.19034 1.18090 1.21150 0.94077 1.14229 0.96875 1.20682 0.93740 0.97051 0.96550 0.88507 0.88180 0.86523 0.76167 0.87816 0.87067 0.86674 0.88255 0.87871 0.90691 0.91213 0.87677 0.87910 0.89869 0.88002 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.77 10.80 127.77 1.38 3.15 16 2 N -0.26 -7.01 3.75 -356.07 -1.34 -8.35 16 3 N -0.27 -6.82 11.90 -57.15 -0.68 -7.50 16 4 C 0.00 -0.04 11.41 85.17 0.97 0.94 16 5 C -0.08 -2.10 5.94 -19.47 -0.12 -2.22 16 6 C -0.11 -2.48 5.69 -11.54 -0.07 -2.54 16 7 C -0.15 -2.01 10.05 30.60 0.31 -1.71 16 8 C -0.16 -2.69 10.23 30.60 0.31 -2.37 16 9 C -0.05 -1.57 6.96 40.75 0.28 -1.28 16 10 C 0.54 17.50 7.93 70.12 0.56 18.05 16 11 O -0.52 -18.26 14.93 19.68 0.29 -17.97 16 12 O -0.35 -11.77 7.68 -57.32 -0.44 -12.21 16 13 C 0.14 4.97 5.59 71.24 0.40 5.36 16 14 C -0.23 -9.30 5.54 -19.67 -0.11 -9.41 16 15 C -0.08 -3.45 9.67 22.22 0.21 -3.24 16 16 C -0.19 -9.75 8.70 22.73 0.20 -9.55 16 17 C 0.09 4.66 5.57 -21.29 -0.12 4.54 16 18 C -0.49 -25.47 9.05 23.46 0.21 -25.25 16 19 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 20 C 0.04 1.74 5.14 85.25 0.44 2.18 16 21 N -0.82 -41.32 10.97 21.82 0.24 -41.08 16 22 Si 0.98 36.56 29.60 68.60 2.03 38.59 16 23 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 24 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 25 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 26 C -0.24 -11.44 9.80 22.73 0.22 -11.22 16 27 C -0.06 -2.58 9.67 22.22 0.21 -2.37 16 28 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.10 2.56 6.17 -2.38 -0.01 2.55 16 30 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.22 2.74 7.33 -2.91 -0.02 2.72 16 32 H 0.10 2.70 6.85 -2.39 -0.02 2.68 16 33 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.12 1.13 7.12 -2.39 -0.02 1.11 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 2.47 8.08 -2.39 -0.02 2.45 16 38 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 39 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 40 H 0.10 5.46 6.18 -2.91 -0.02 5.44 16 41 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 42 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 43 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -61.22 368.78 6.44 -54.78 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 1.04 Total: 30.66 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 5.30 Total: -36.93 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -1.78 Total: -56.93 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.15 Total: -30.17 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Total: -61.22 6.44 -54.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849925117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.927 kcal (2) G-P(sol) polarization free energy of solvation -61.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds