Wall clock time and date at job start Tue Mar 31 2020 14:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00009 * 2 1 4 4 H 1.48494 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46959 * 299.99750 * 3 2 1 6 6 H 1.48502 * 109.47264 * 59.99784 * 3 2 1 7 7 C 1.37882 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99926 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99912 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.46506 * 119.99899 * 89.99798 * 10 9 7 12 12 C 1.53001 * 109.46990 * 90.00343 * 11 10 9 13 13 C 1.53002 * 117.49572 * 243.62473 * 12 11 10 14 14 C 1.52999 * 117.49607 * 175.00271 * 12 11 10 15 15 C 1.34777 * 120.00120 * 270.00017 * 10 9 7 16 16 O 1.21590 * 120.00020 * 0.02562 * 15 10 9 17 17 N 1.34775 * 119.99687 * 179.97438 * 15 10 9 18 18 C 1.39614 * 119.99566 * 175.52471 * 17 15 10 19 19 C 1.37776 * 120.27632 * 34.74098 * 18 17 15 20 20 C 1.39167 * 120.74219 * 179.97438 * 19 18 17 21 21 C 1.36160 * 121.06687 * 0.02562 * 20 19 18 22 22 C 1.40495 * 120.02064 * 359.95631 * 21 20 19 23 23 N 1.33813 * 121.02296 * 179.97438 * 22 21 20 24 24 C 1.31349 * 119.70849 * 180.02562 * 23 22 21 25 25 C 1.39623 * 120.70178 * 0.02562 * 24 23 22 26 26 N 1.31370 * 120.69786 * 359.96019 * 25 24 23 27 27 C 1.33587 * 119.73162 * 359.81663 * 26 25 24 28 28 H 0.97003 * 120.00372 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47219 * 60.00048 * 9 7 2 30 30 H 1.09000 * 109.47309 * 299.99569 * 9 7 2 31 31 H 1.09000 * 109.46804 * 329.99985 * 11 10 9 32 32 H 1.08997 * 109.46594 * 210.00298 * 11 10 9 33 33 H 1.08994 * 115.54971 * 29.32731 * 12 11 10 34 34 H 1.09001 * 117.50210 * 359.97438 * 13 12 11 35 35 H 1.08997 * 117.49915 * 145.02095 * 13 12 11 36 36 H 1.09007 * 117.49401 * 214.97800 * 14 12 11 37 37 H 1.08995 * 117.50001 * 359.97438 * 14 12 11 38 38 H 0.96995 * 120.00675 * 355.52461 * 17 15 10 39 39 H 1.08008 * 119.63008 * 359.97438 * 19 18 17 40 40 H 1.07998 * 119.46533 * 179.97438 * 20 19 18 41 41 H 1.07995 * 119.98715 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.65538 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.65509 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1694 1.2693 12 6 1.7483 -5.3007 1.7110 13 6 0.9717 -5.1080 3.0151 14 6 2.1418 -6.0923 2.9597 15 6 2.6409 -4.1249 -1.1667 16 8 2.2462 -3.6625 -2.2197 17 7 3.5170 -5.1490 -1.1666 18 6 3.8990 -5.7410 -2.3719 19 6 4.0231 -4.9775 -3.5121 20 6 4.4037 -5.5574 -4.7186 21 6 4.6627 -6.8912 -4.8063 22 6 4.5485 -7.7058 -3.6673 23 7 4.7978 -9.0190 -3.7308 24 6 4.6824 -9.7564 -2.6500 25 6 4.3017 -9.1850 -1.4343 26 7 4.0519 -7.8982 -1.3472 27 6 4.1666 -7.1261 -2.4314 28 1 -0.4851 0.8400 0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.6868 -3.3877 2.0289 32 1 3.6884 -4.5594 1.1389 33 1 1.2536 -5.8438 0.9059 34 1 1.1242 -4.1755 3.5587 35 1 -0.0342 -5.5243 3.0681 36 1 1.9056 -7.1563 2.9762 37 1 3.0639 -5.8075 3.4663 38 1 3.8823 -5.4748 -0.3291 39 1 3.8228 -3.9170 -3.4691 40 1 4.4942 -4.9395 -5.5998 41 1 4.9564 -7.3230 -5.7516 42 1 4.8834 -10.8163 -2.7023 43 1 4.2117 -9.8072 -0.5563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880782046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:48 Heat of formation + Delta-G solvation = 79.599235 kcal Electronic energy + Delta-G solvation = -27293.680080 eV Core-core repulsion = 23533.475698 eV Total energy + Delta-G solvation = -3760.204382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53089 -39.93124 -37.71091 -36.97836 -35.36363 -34.47311 -33.71513 -32.48434 -30.84378 -29.37041 -27.77585 -26.07681 -25.32406 -24.28986 -23.35080 -22.20013 -21.63082 -20.77611 -19.84460 -18.53522 -18.26425 -17.74385 -16.78760 -16.52890 -16.08926 -15.28305 -15.19794 -14.97482 -14.87058 -14.58355 -14.29982 -14.04936 -13.82935 -13.69328 -13.00857 -12.50970 -12.40921 -12.08600 -11.97379 -11.83981 -11.76478 -11.67901 -11.49946 -11.36777 -11.24527 -10.90985 -10.67184 -10.31778 -10.14551 -9.96895 -9.76451 -9.63775 -9.42047 -9.18217 -8.96498 -8.45190 -7.95105 -7.57716 -6.05884 -4.10654 0.20444 0.50997 1.88360 2.81041 3.05058 3.28507 3.36394 3.40341 3.70669 3.89347 3.93312 4.04289 4.08164 4.22081 4.36317 4.46873 4.73157 4.86163 4.95028 5.06501 5.09447 5.18984 5.19951 5.28553 5.31694 5.52061 5.58590 5.71185 5.74060 5.88690 5.95768 6.05464 6.07345 6.17685 6.26233 6.38029 6.44709 6.57021 6.74850 6.98657 7.17400 7.34325 7.46476 7.62495 7.63517 7.91583 8.20801 8.50047 8.89645 9.14744 9.54608 11.01968 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.003866 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.197997 B = 7240.714986 C = 9041.451653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.261 3.739 10 N -0.599 5.599 11 C 0.143 3.857 12 C -0.167 4.167 13 C -0.173 4.173 14 C -0.179 4.179 15 C 0.698 3.302 16 O -0.566 6.566 17 N -0.679 5.679 18 C 0.215 3.785 19 C -0.121 4.121 20 C -0.062 4.062 21 C -0.124 4.124 22 C 0.098 3.902 23 N -0.429 5.429 24 C 0.074 3.926 25 C 0.060 3.940 26 N -0.416 5.416 27 C 0.056 3.944 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.410 0.590 39 H 0.160 0.840 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.171 0.829 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 -18.325 -0.111 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.142 3.858 10 N -0.332 5.332 11 C 0.018 3.982 12 C -0.187 4.187 13 C -0.210 4.210 14 C -0.216 4.216 15 C 0.400 3.600 16 O -0.443 6.443 17 N -0.327 5.327 18 C 0.115 3.885 19 C -0.144 4.144 20 C -0.083 4.083 21 C -0.144 4.144 22 C -0.026 4.026 23 N -0.143 5.143 24 C -0.102 4.102 25 C -0.116 4.116 26 N -0.130 5.130 27 C -0.071 4.071 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.248 0.752 39 H 0.177 0.823 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.188 0.812 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.778 -17.529 -0.857 19.623 hybrid contribution 0.484 0.551 0.594 0.943 sum 9.262 -16.979 -0.263 19.342 Atomic orbital electron populations 1.69941 1.05963 1.26910 1.50416 1.24917 0.94853 0.99148 0.95083 0.86456 0.79985 0.83452 0.77593 1.19841 1.20872 1.21006 1.21483 0.93402 0.90652 1.51065 0.92406 1.19268 0.86725 0.81100 0.98678 1.47561 1.47496 1.36091 1.02071 1.20992 0.94721 0.94668 0.87812 1.22870 1.03161 1.00635 0.92015 1.22997 0.96220 1.01103 1.00668 1.22906 0.99646 0.97303 1.01766 1.15933 0.79196 0.79429 0.85414 1.90884 1.61388 1.62195 1.29802 1.42807 1.46256 1.35840 1.07803 1.17211 0.95913 0.87832 0.87566 1.21597 0.99149 1.02454 0.91238 1.20931 0.95007 0.94457 0.97857 1.20625 1.03508 0.93117 0.97176 1.19315 0.98916 0.90808 0.93604 1.68730 1.11311 1.04440 1.29850 1.23968 0.95558 1.01301 0.89354 1.23896 0.96587 0.91984 0.99101 1.68467 1.09581 1.05727 1.29223 1.19357 1.03461 0.93394 0.90886 0.92762 0.93742 0.94537 0.89229 0.91980 0.87977 0.88404 0.89160 0.89136 0.88864 0.75242 0.82274 0.84441 0.84591 0.81191 0.81151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.26 6.69 5.16 -5.20 -0.03 6.66 16 10 N -0.60 -12.51 2.46 -180.80 -0.44 -12.95 16 11 C 0.14 2.31 5.49 -4.04 -0.02 2.29 16 12 C -0.17 -2.39 6.01 -90.62 -0.54 -2.94 16 13 C -0.17 -2.26 10.18 -26.73 -0.27 -2.53 16 14 C -0.18 -2.01 10.25 -26.73 -0.27 -2.29 16 15 C 0.70 14.73 8.12 -86.92 -0.71 14.02 16 16 O -0.57 -13.96 13.34 5.29 0.07 -13.89 16 17 N -0.68 -11.60 5.06 -13.99 -0.07 -11.67 16 18 C 0.22 3.54 6.35 -83.36 -0.53 3.01 16 19 C -0.12 -1.93 8.68 -39.41 -0.34 -2.27 16 20 C -0.06 -0.78 9.94 -39.98 -0.40 -1.18 16 21 C -0.12 -1.53 9.96 -39.48 -0.39 -1.93 16 22 C 0.10 1.36 6.59 -84.81 -0.56 0.80 16 23 N -0.43 -5.36 10.47 -10.83 -0.11 -5.47 16 24 C 0.07 0.69 11.21 -17.24 -0.19 0.49 16 25 C 0.06 0.58 11.21 -17.23 -0.19 0.39 16 26 N -0.42 -5.56 10.04 -10.69 -0.11 -5.66 16 27 C 0.06 0.84 6.61 -84.63 -0.56 0.28 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 30 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 31 H 0.09 1.49 7.81 -51.93 -0.41 1.09 16 32 H 0.06 0.86 6.30 -51.93 -0.33 0.54 16 33 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.10 1.30 8.03 -51.93 -0.42 0.88 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.41 6.15 6.28 -40.82 -0.26 5.89 16 39 H 0.16 2.89 6.16 -52.48 -0.32 2.56 16 40 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -33.63 367.09 -10.31 -43.94 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.46 Total: 7.51 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -5.43 Total: 1.53 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.00 Total: -61.17 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.07 Total: -13.89 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.63 -10.31 -43.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880782046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.540 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds