Wall clock time and date at job start Tue Mar 31 2020 14:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00009 * 2 1 4 4 H 1.48494 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46959 * 299.99750 * 3 2 1 6 6 H 1.48502 * 109.47264 * 59.99784 * 3 2 1 7 7 C 1.37882 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99926 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99912 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.46506 * 119.99899 * 89.99798 * 10 9 7 12 12 C 1.53001 * 109.46990 * 90.00343 * 11 10 9 13 13 C 1.53002 * 117.49572 * 243.62473 * 12 11 10 14 14 C 1.52999 * 117.49607 * 175.00271 * 12 11 10 15 15 C 1.34777 * 120.00120 * 270.00017 * 10 9 7 16 16 O 1.21590 * 120.00020 * 0.02562 * 15 10 9 17 17 N 1.34775 * 119.99687 * 179.97438 * 15 10 9 18 18 C 1.39614 * 119.99566 * 175.52471 * 17 15 10 19 19 C 1.37776 * 120.27632 * 34.74098 * 18 17 15 20 20 C 1.39167 * 120.74219 * 179.97438 * 19 18 17 21 21 C 1.36160 * 121.06687 * 0.02562 * 20 19 18 22 22 C 1.40495 * 120.02064 * 359.95631 * 21 20 19 23 23 N 1.33813 * 121.02296 * 179.97438 * 22 21 20 24 24 C 1.31349 * 119.70849 * 180.02562 * 23 22 21 25 25 C 1.39623 * 120.70178 * 0.02562 * 24 23 22 26 26 N 1.31370 * 120.69786 * 359.96019 * 25 24 23 27 27 C 1.33587 * 119.73162 * 359.81663 * 26 25 24 28 28 H 0.97003 * 120.00372 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47219 * 60.00048 * 9 7 2 30 30 H 1.09000 * 109.47309 * 299.99569 * 9 7 2 31 31 H 1.09000 * 109.46804 * 329.99985 * 11 10 9 32 32 H 1.08997 * 109.46594 * 210.00298 * 11 10 9 33 33 H 1.08994 * 115.54971 * 29.32731 * 12 11 10 34 34 H 1.09001 * 117.50210 * 359.97438 * 13 12 11 35 35 H 1.08997 * 117.49915 * 145.02095 * 13 12 11 36 36 H 1.09007 * 117.49401 * 214.97800 * 14 12 11 37 37 H 1.08995 * 117.50001 * 359.97438 * 14 12 11 38 38 H 0.96995 * 120.00675 * 355.52461 * 17 15 10 39 39 H 1.08008 * 119.63008 * 359.97438 * 19 18 17 40 40 H 1.07998 * 119.46533 * 179.97438 * 20 19 18 41 41 H 1.07995 * 119.98715 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.65538 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.65509 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1694 1.2693 12 6 1.7483 -5.3007 1.7110 13 6 0.9717 -5.1080 3.0151 14 6 2.1418 -6.0923 2.9597 15 6 2.6409 -4.1249 -1.1667 16 8 2.2462 -3.6625 -2.2197 17 7 3.5170 -5.1490 -1.1666 18 6 3.8990 -5.7410 -2.3719 19 6 4.0231 -4.9775 -3.5121 20 6 4.4037 -5.5574 -4.7186 21 6 4.6627 -6.8912 -4.8063 22 6 4.5485 -7.7058 -3.6673 23 7 4.7978 -9.0190 -3.7308 24 6 4.6824 -9.7564 -2.6500 25 6 4.3017 -9.1850 -1.4343 26 7 4.0519 -7.8982 -1.3472 27 6 4.1666 -7.1261 -2.4314 28 1 -0.4851 0.8400 0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.6868 -3.3877 2.0289 32 1 3.6884 -4.5594 1.1389 33 1 1.2536 -5.8438 0.9059 34 1 1.1242 -4.1755 3.5587 35 1 -0.0342 -5.5243 3.0681 36 1 1.9056 -7.1563 2.9762 37 1 3.0639 -5.8075 3.4663 38 1 3.8823 -5.4748 -0.3291 39 1 3.8228 -3.9170 -3.4691 40 1 4.4942 -4.9395 -5.5998 41 1 4.9564 -7.3230 -5.7516 42 1 4.8834 -10.8163 -2.7023 43 1 4.2117 -9.8072 -0.5563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880782046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:47 Heat of formation + Delta-G solvation = 58.109019 kcal Electronic energy + Delta-G solvation = -27294.611966 eV Core-core repulsion = 23533.475698 eV Total energy + Delta-G solvation = -3761.136267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.55062 -41.38555 -38.86357 -38.14770 -36.54388 -36.10524 -35.02336 -34.40032 -31.78277 -30.70822 -29.46567 -27.64398 -26.29967 -25.25651 -25.16393 -23.18769 -22.98204 -22.00984 -21.16154 -19.68477 -19.50332 -18.93808 -18.60017 -17.95779 -17.34389 -16.62761 -16.58766 -16.25950 -16.03391 -15.95115 -15.63232 -15.17332 -14.98853 -14.77424 -14.58130 -14.36850 -13.81193 -13.36669 -13.19796 -13.15811 -12.93035 -12.80421 -12.73799 -12.65045 -12.63433 -12.59146 -12.31026 -12.22776 -11.72755 -11.38384 -11.23038 -11.05157 -10.81505 -10.63586 -10.13566 -9.95503 -9.59988 -8.88916 -8.21241 -6.36094 -0.75224 -0.42544 0.85100 1.36793 1.39072 1.50017 1.59018 1.83016 2.17412 2.39295 2.78996 2.97332 2.97696 3.08185 3.08851 3.20086 3.41542 3.79799 3.84357 3.96657 4.00224 4.11684 4.22316 4.24784 4.34030 4.39647 4.46523 4.57118 4.74694 4.83523 4.88106 4.93110 5.04621 5.06037 5.19149 5.23482 5.25148 5.31174 5.33951 5.45629 5.55104 5.75092 5.80769 5.98591 6.05771 6.28870 6.72234 6.74501 6.94207 7.30110 7.53618 8.85580 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.003866 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.197997 B = 7240.714986 C = 9041.451653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.282 3.718 10 N -0.604 5.604 11 C 0.143 3.857 12 C -0.187 4.187 13 C -0.183 4.183 14 C -0.140 4.140 15 C 0.696 3.304 16 O -0.613 6.613 17 N -0.663 5.663 18 C 0.183 3.817 19 C -0.135 4.135 20 C -0.068 4.068 21 C -0.110 4.110 22 C 0.078 3.922 23 N -0.446 5.446 24 C 0.089 3.911 25 C 0.077 3.923 26 N -0.446 5.446 27 C 0.041 3.959 28 H 0.267 0.733 29 H -0.002 1.002 30 H 0.027 0.973 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.418 0.582 39 H 0.127 0.873 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.221 0.779 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.447 -21.288 0.819 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.071 0.929 9 C 0.161 3.839 10 N -0.337 5.337 11 C 0.020 3.980 12 C -0.206 4.206 13 C -0.220 4.220 14 C -0.177 4.177 15 C 0.398 3.602 16 O -0.493 6.493 17 N -0.311 5.311 18 C 0.084 3.916 19 C -0.159 4.159 20 C -0.088 4.088 21 C -0.130 4.130 22 C -0.045 4.045 23 N -0.161 5.161 24 C -0.087 4.087 25 C -0.100 4.100 26 N -0.160 5.160 27 C -0.084 4.084 28 H 0.076 0.924 29 H 0.016 0.984 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.258 0.742 39 H 0.145 0.855 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.237 0.763 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 10.919 -20.515 0.078 23.240 hybrid contribution -0.141 1.169 0.318 1.220 sum 10.778 -19.346 0.396 22.149 Atomic orbital electron populations 1.70058 1.07504 1.28066 1.50998 1.25808 0.95746 1.02854 0.94433 0.85378 0.78725 0.78793 0.77953 1.19254 1.20757 1.19453 1.21718 0.93233 0.91837 1.51211 0.92917 1.18662 0.86970 0.82417 0.95848 1.47382 1.46944 1.35426 1.03977 1.21194 0.96380 0.95049 0.85395 1.22632 1.04241 1.01147 0.92600 1.23068 0.97370 1.01972 0.99626 1.23020 0.99208 0.97743 0.97762 1.16058 0.79504 0.80020 0.84656 1.90843 1.63129 1.63895 1.31430 1.42401 1.45288 1.34628 1.08815 1.17435 0.97917 0.89106 0.87130 1.21500 1.00281 1.01156 0.92916 1.21098 0.95082 0.95197 0.97397 1.20945 1.01524 0.92651 0.97905 1.19543 0.99484 0.91903 0.93565 1.68826 1.12273 1.03653 1.31325 1.24873 0.92470 1.03149 0.88225 1.24798 0.93252 0.90974 1.00931 1.68489 1.11219 1.07392 1.28886 1.19273 1.04285 0.92730 0.92076 0.92410 0.98373 0.95462 0.89851 0.89540 0.89871 0.88890 0.88831 0.87159 0.86964 0.74188 0.85486 0.81884 0.82019 0.76256 0.76589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 2 C 0.01 0.62 5.46 84.66 0.46 1.08 16 3 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 9 C 0.28 15.48 5.16 85.63 0.44 15.92 16 10 N -0.60 -26.84 2.46 -844.19 -2.07 -28.92 16 11 C 0.14 4.72 5.49 86.38 0.47 5.20 16 12 C -0.19 -5.34 6.01 -10.79 -0.06 -5.40 16 13 C -0.18 -4.69 10.18 30.60 0.31 -4.38 16 14 C -0.14 -2.79 10.25 30.60 0.31 -2.48 16 15 C 0.70 31.46 8.12 179.05 1.45 32.91 16 16 O -0.61 -32.92 13.34 -4.00 -0.05 -32.97 16 17 N -0.66 -23.79 5.06 -316.43 -1.60 -25.39 16 18 C 0.18 6.30 6.35 38.52 0.24 6.55 16 19 C -0.14 -4.63 8.68 22.38 0.19 -4.43 16 20 C -0.07 -1.74 9.94 22.01 0.22 -1.52 16 21 C -0.11 -2.62 9.96 22.34 0.22 -2.40 16 22 C 0.08 2.06 6.59 40.26 0.27 2.33 16 23 N -0.45 -9.82 10.47 -188.16 -1.97 -11.78 16 24 C 0.09 1.26 11.21 85.10 0.95 2.21 16 25 C 0.08 1.17 11.21 85.10 0.95 2.12 16 26 N -0.45 -11.07 10.04 -187.73 -1.89 -12.95 16 27 C 0.04 1.22 6.61 40.47 0.27 1.49 16 28 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 30 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 31 H 0.08 2.84 7.81 -2.39 -0.02 2.82 16 32 H 0.09 2.38 6.30 -2.39 -0.02 2.37 16 33 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.09 2.46 8.03 -2.39 -0.02 2.44 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.42 12.84 6.28 -92.71 -0.58 12.25 16 39 H 0.13 5.14 6.16 -2.91 -0.02 5.12 16 40 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.22 0.80 8.06 -2.91 -0.02 0.78 16 43 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -79.45 367.09 2.15 -77.30 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.47 Total: 25.35 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 6.95 Total: 18.07 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -7.24 Total: -134.86 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.05 Total: -32.97 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -79.45 2.15 -77.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880782046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.407 kcal (2) G-P(sol) polarization free energy of solvation -79.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds