Wall clock time and date at job start Tue Mar 31 2020 14:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48505 * 109.47079 * 274.98335 * 3 2 1 5 5 H 1.48495 * 109.47547 * 34.98737 * 3 2 1 6 6 H 1.48500 * 109.47326 * 154.98943 * 3 2 1 7 7 C 1.37878 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00515 * 190.17672 * 7 2 1 9 9 C 1.50699 * 120.00130 * 10.18182 * 7 2 1 10 10 C 1.53036 * 109.46570 * 186.06733 * 9 7 2 11 11 C 1.53185 * 109.31839 * 178.62648 * 10 9 7 12 12 N 1.46928 * 108.77564 * 54.63408 * 11 10 9 13 13 C 1.34778 * 120.63144 * 126.37152 * 12 11 10 14 14 O 1.21585 * 119.99828 * 185.50202 * 13 12 11 15 15 N 1.34769 * 119.99899 * 5.49917 * 13 12 11 16 16 C 1.39606 * 119.99815 * 183.87475 * 15 13 12 17 17 C 1.37780 * 120.27479 * 334.32647 * 16 15 13 18 18 C 1.39169 * 120.73538 * 180.25994 * 17 16 15 19 19 C 1.36153 * 121.07390 * 359.43737 * 18 17 16 20 20 C 1.40499 * 120.01882 * 0.28266 * 19 18 17 21 21 N 1.33813 * 121.02291 * 180.02562 * 20 19 18 22 22 C 1.31364 * 119.70150 * 179.97438 * 21 20 19 23 23 C 1.39624 * 120.70348 * 359.97438 * 22 21 20 24 24 N 1.31373 * 120.69522 * 0.04199 * 23 22 21 25 25 C 1.33581 * 119.73266 * 359.96019 * 24 23 22 26 26 C 1.46923 * 118.73688 * 306.64465 * 12 11 10 27 27 C 1.52761 * 109.00952 * 53.30864 * 26 12 11 28 28 H 0.97009 * 119.99394 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.45916 * 306.04219 * 9 7 2 30 30 H 1.09004 * 109.49372 * 58.67100 * 10 9 7 31 31 H 1.09004 * 109.52041 * 298.59590 * 10 9 7 32 32 H 1.09004 * 109.58737 * 294.84862 * 11 10 9 33 33 H 1.08994 * 109.70860 * 174.49467 * 11 10 9 34 34 H 0.97000 * 120.00463 * 3.86677 * 15 13 12 35 35 H 1.08004 * 119.63213 * 359.97438 * 17 16 15 36 36 H 1.07999 * 119.45893 * 179.72036 * 18 17 16 37 37 H 1.08002 * 119.99061 * 180.29454 * 19 18 17 38 38 H 1.07998 * 119.64849 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.64805 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.58937 * 173.13866 * 26 12 11 41 41 H 1.08997 * 109.58957 * 293.56622 * 26 12 11 42 42 H 1.09005 * 109.56808 * 185.54769 * 27 26 12 43 43 H 1.09005 * 109.38832 * 65.51501 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3914 2.1071 -1.3948 5 1 1.5035 2.6199 0.8027 6 1 3.5955 1.4119 0.5919 7 6 2.0044 -1.1941 0.0005 8 1 3.0717 -1.2015 0.1658 9 6 1.2687 -2.4890 -0.2296 10 6 2.2292 -3.6636 -0.0302 11 6 1.4699 -4.9788 -0.2312 12 7 0.8156 -4.9509 -1.5465 13 6 1.0144 -5.9459 -2.4336 14 8 0.5491 -5.8635 -3.5539 15 7 1.7289 -7.0322 -2.0788 16 6 2.0035 -8.0252 -3.0209 17 6 1.1702 -8.2053 -4.1033 18 6 1.4318 -9.1958 -5.0453 19 6 2.5211 -10.0046 -4.9305 20 6 3.3996 -9.8507 -3.8450 21 7 4.4764 -10.6341 -3.7127 22 6 5.2808 -10.4672 -2.6877 23 6 5.0249 -9.4801 -1.7339 24 7 3.9740 -8.6992 -1.8423 25 6 3.1409 -8.8492 -2.8757 26 6 -0.0546 -3.8146 -1.8786 27 6 0.7175 -2.5152 -1.6570 28 1 -0.4850 0.8402 -0.0004 29 1 0.4446 -2.5694 0.4794 30 1 2.6393 -3.6309 0.9792 31 1 3.0407 -3.5976 -0.7549 32 1 0.7168 -5.0890 0.5492 33 1 2.1666 -5.8159 -0.1873 34 1 2.0524 -7.1241 -1.1690 35 1 0.3017 -7.5739 -4.2195 36 1 0.7624 -9.3219 -5.8833 37 1 2.7100 -10.7645 -5.6743 38 1 6.1493 -11.1002 -2.5815 39 1 5.6978 -9.3575 -0.8981 40 1 -0.3614 -3.8822 -2.9224 41 1 -0.9344 -3.8279 -1.2354 42 1 0.0516 -1.6651 -1.8056 43 1 1.5429 -2.4592 -2.3668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880783756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:35 Heat of formation + Delta-G solvation = 49.730705 kcal Electronic energy + Delta-G solvation = -27110.613517 eV Core-core repulsion = 23349.113939 eV Total energy + Delta-G solvation = -3761.499578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71927 -40.39666 -37.95225 -36.79900 -35.52583 -34.09738 -33.47593 -31.25787 -30.98889 -30.44122 -29.13912 -26.23223 -25.47652 -24.46148 -23.44406 -22.75708 -21.80539 -20.51883 -19.50671 -18.61185 -18.45799 -17.90108 -16.86968 -16.41990 -16.17121 -15.59635 -15.25696 -14.98248 -14.80585 -14.53717 -14.30821 -14.06607 -13.84138 -13.21633 -13.04347 -12.77646 -12.54501 -12.42035 -12.18259 -11.98665 -11.92900 -11.84194 -11.76348 -11.34108 -10.93852 -10.71336 -10.50386 -10.36177 -10.21335 -9.81730 -9.64944 -9.37130 -9.16867 -9.12973 -9.04674 -8.38081 -8.27737 -7.81493 -6.08658 -4.09983 0.05935 0.36891 1.72195 2.60225 2.67349 3.26845 3.27700 3.35226 3.37722 3.75242 3.85122 3.90516 3.93162 4.19034 4.39787 4.58361 4.72490 4.94407 5.03219 5.15808 5.22792 5.23791 5.35992 5.65883 5.69161 5.74778 5.89448 5.94527 5.97406 6.10077 6.21666 6.30358 6.32088 6.39368 6.50889 6.67903 6.75007 6.88617 6.92050 7.05129 7.09057 7.31031 7.49471 7.62530 7.83778 7.91626 7.98950 8.35560 8.59395 8.93297 9.53899 11.00252 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.002793 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.382008 B =10023.859600 C =10812.043906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.122 4.122 11 C 0.107 3.893 12 N -0.608 5.608 13 C 0.703 3.297 14 O -0.579 6.579 15 N -0.671 5.671 16 C 0.211 3.789 17 C -0.136 4.136 18 C -0.063 4.063 19 C -0.123 4.123 20 C 0.100 3.900 21 N -0.428 5.428 22 C 0.077 3.923 23 C 0.064 3.936 24 N -0.421 5.421 25 C 0.055 3.945 26 C 0.125 3.875 27 C -0.118 4.118 28 H 0.261 0.739 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.415 0.585 35 H 0.171 0.829 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.285 -20.918 -4.115 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.160 4.160 11 C -0.016 4.016 12 N -0.343 5.343 13 C 0.406 3.594 14 O -0.458 6.458 15 N -0.317 5.317 16 C 0.111 3.889 17 C -0.159 4.159 18 C -0.083 4.083 19 C -0.144 4.144 20 C -0.024 4.024 21 N -0.142 5.142 22 C -0.099 4.099 23 C -0.111 4.111 24 N -0.136 5.136 25 C -0.072 4.072 26 C 0.004 3.996 27 C -0.157 4.157 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.254 0.746 35 H 0.188 0.812 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.190 0.810 39 H 0.191 0.809 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.558 -20.519 -4.929 21.589 hybrid contribution 0.960 0.957 0.603 1.483 sum 5.517 -19.562 -4.326 20.780 Atomic orbital electron populations 1.69956 1.05904 1.26632 1.50041 1.24948 0.94772 0.99059 0.94918 0.86671 0.80066 0.83793 0.78037 1.20699 1.21302 1.19929 1.21132 0.94227 0.90958 1.49191 0.92716 1.18645 0.94204 0.91621 0.92610 1.21999 0.99069 0.94026 1.00950 1.21855 0.96242 0.99537 0.83943 1.47496 1.49613 1.21548 1.15598 1.15829 0.79341 0.79711 0.84545 1.90779 1.55444 1.80139 1.19482 1.42709 1.56188 1.19036 1.13795 1.17267 0.91393 0.88607 0.91675 1.21889 1.01213 0.98922 0.93866 1.20944 0.96223 0.92958 0.98214 1.20660 0.94615 1.01683 0.97425 1.19309 0.94175 0.93327 0.95604 1.68759 1.02106 1.22983 1.20394 1.24017 0.98589 0.96826 0.90432 1.23936 0.95180 0.92197 0.99784 1.68435 1.02725 1.22711 1.19681 1.19270 0.95277 0.98392 0.94295 1.21746 0.91926 0.84962 1.01001 1.21895 0.99311 0.94438 1.00046 0.92950 0.94560 0.91746 0.92902 0.91331 0.91998 0.74618 0.81204 0.84430 0.84513 0.80969 0.80874 0.90201 0.91939 0.89608 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.54 12.23 55.43 0.68 -23.87 16 2 C 0.06 1.74 5.18 -17.82 -0.09 1.65 16 3 Si 0.89 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.60 8.47 -34.44 -0.29 -13.89 16 8 H 0.05 1.44 7.77 -52.49 -0.41 1.03 16 9 C 0.05 1.10 1.93 -91.73 -0.18 0.93 16 10 C -0.12 -2.32 5.30 -26.62 -0.14 -2.46 16 11 C 0.11 1.67 6.35 -3.71 -0.02 1.65 16 12 N -0.61 -10.54 2.98 -178.77 -0.53 -11.08 16 13 C 0.70 12.16 8.18 -86.92 -0.71 11.45 16 14 O -0.58 -11.19 12.69 5.29 0.07 -11.13 16 15 N -0.67 -9.86 5.14 -13.99 -0.07 -9.94 16 16 C 0.21 3.03 6.49 -83.36 -0.54 2.49 16 17 C -0.14 -1.82 8.77 -39.40 -0.35 -2.17 16 18 C -0.06 -0.66 9.94 -39.99 -0.40 -1.06 16 19 C -0.12 -1.34 9.96 -39.48 -0.39 -1.73 16 20 C 0.10 1.26 6.59 -84.81 -0.56 0.70 16 21 N -0.43 -4.90 10.47 -10.82 -0.11 -5.01 16 22 C 0.08 0.65 11.21 -17.23 -0.19 0.46 16 23 C 0.06 0.57 11.21 -17.23 -0.19 0.38 16 24 N -0.42 -5.21 9.91 -10.69 -0.11 -5.32 16 25 C 0.05 0.74 6.61 -84.64 -0.56 0.18 16 26 C 0.13 2.37 6.41 -3.93 -0.03 2.35 16 27 C -0.12 -2.62 5.20 -26.83 -0.14 -2.76 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.81 5.73 -51.93 -0.30 0.51 16 34 H 0.41 5.45 5.96 -40.82 -0.24 5.21 16 35 H 0.17 2.52 5.49 -52.48 -0.29 2.23 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.08 1.52 7.00 -51.93 -0.36 1.16 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.09 2.11 6.95 -51.93 -0.36 1.75 16 43 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -31.34 350.31 -9.93 -41.26 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.32 Total: 5.83 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -4.78 Total: -1.84 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.15 Total: -55.21 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.34 -9.93 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880783756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.995 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds