Wall clock time and date at job start Tue Mar 31 2020 14:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48505 * 109.47079 * 274.98335 * 3 2 1 5 5 H 1.48495 * 109.47547 * 34.98737 * 3 2 1 6 6 H 1.48500 * 109.47326 * 154.98943 * 3 2 1 7 7 C 1.37878 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00515 * 190.17672 * 7 2 1 9 9 C 1.50699 * 120.00130 * 10.18182 * 7 2 1 10 10 C 1.53036 * 109.46570 * 186.06733 * 9 7 2 11 11 C 1.53185 * 109.31839 * 178.62648 * 10 9 7 12 12 N 1.46928 * 108.77564 * 54.63408 * 11 10 9 13 13 C 1.34778 * 120.63144 * 126.37152 * 12 11 10 14 14 O 1.21585 * 119.99828 * 185.50202 * 13 12 11 15 15 N 1.34769 * 119.99899 * 5.49917 * 13 12 11 16 16 C 1.39606 * 119.99815 * 183.87475 * 15 13 12 17 17 C 1.37780 * 120.27479 * 334.32647 * 16 15 13 18 18 C 1.39169 * 120.73538 * 180.25994 * 17 16 15 19 19 C 1.36153 * 121.07390 * 359.43737 * 18 17 16 20 20 C 1.40499 * 120.01882 * 0.28266 * 19 18 17 21 21 N 1.33813 * 121.02291 * 180.02562 * 20 19 18 22 22 C 1.31364 * 119.70150 * 179.97438 * 21 20 19 23 23 C 1.39624 * 120.70348 * 359.97438 * 22 21 20 24 24 N 1.31373 * 120.69522 * 0.04199 * 23 22 21 25 25 C 1.33581 * 119.73266 * 359.96019 * 24 23 22 26 26 C 1.46923 * 118.73688 * 306.64465 * 12 11 10 27 27 C 1.52761 * 109.00952 * 53.30864 * 26 12 11 28 28 H 0.97009 * 119.99394 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.45916 * 306.04219 * 9 7 2 30 30 H 1.09004 * 109.49372 * 58.67100 * 10 9 7 31 31 H 1.09004 * 109.52041 * 298.59590 * 10 9 7 32 32 H 1.09004 * 109.58737 * 294.84862 * 11 10 9 33 33 H 1.08994 * 109.70860 * 174.49467 * 11 10 9 34 34 H 0.97000 * 120.00463 * 3.86677 * 15 13 12 35 35 H 1.08004 * 119.63213 * 359.97438 * 17 16 15 36 36 H 1.07999 * 119.45893 * 179.72036 * 18 17 16 37 37 H 1.08002 * 119.99061 * 180.29454 * 19 18 17 38 38 H 1.07998 * 119.64849 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.64805 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.58937 * 173.13866 * 26 12 11 41 41 H 1.08997 * 109.58957 * 293.56622 * 26 12 11 42 42 H 1.09005 * 109.56808 * 185.54769 * 27 26 12 43 43 H 1.09005 * 109.38832 * 65.51501 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3914 2.1071 -1.3948 5 1 1.5035 2.6199 0.8027 6 1 3.5955 1.4119 0.5919 7 6 2.0044 -1.1941 0.0005 8 1 3.0717 -1.2015 0.1658 9 6 1.2687 -2.4890 -0.2296 10 6 2.2292 -3.6636 -0.0302 11 6 1.4699 -4.9788 -0.2312 12 7 0.8156 -4.9509 -1.5465 13 6 1.0144 -5.9459 -2.4336 14 8 0.5491 -5.8635 -3.5539 15 7 1.7289 -7.0322 -2.0788 16 6 2.0035 -8.0252 -3.0209 17 6 1.1702 -8.2053 -4.1033 18 6 1.4318 -9.1958 -5.0453 19 6 2.5211 -10.0046 -4.9305 20 6 3.3996 -9.8507 -3.8450 21 7 4.4764 -10.6341 -3.7127 22 6 5.2808 -10.4672 -2.6877 23 6 5.0249 -9.4801 -1.7339 24 7 3.9740 -8.6992 -1.8423 25 6 3.1409 -8.8492 -2.8757 26 6 -0.0546 -3.8146 -1.8786 27 6 0.7175 -2.5152 -1.6570 28 1 -0.4850 0.8402 -0.0004 29 1 0.4446 -2.5694 0.4794 30 1 2.6393 -3.6309 0.9792 31 1 3.0407 -3.5976 -0.7549 32 1 0.7168 -5.0890 0.5492 33 1 2.1666 -5.8159 -0.1873 34 1 2.0524 -7.1241 -1.1690 35 1 0.3017 -7.5739 -4.2195 36 1 0.7624 -9.3219 -5.8833 37 1 2.7100 -10.7645 -5.6743 38 1 6.1493 -11.1002 -2.5815 39 1 5.6978 -9.3575 -0.8981 40 1 -0.3614 -3.8822 -2.9224 41 1 -0.9344 -3.8279 -1.2354 42 1 0.0516 -1.6651 -1.8056 43 1 1.5429 -2.4592 -2.3668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880783756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:34 Heat of formation + Delta-G solvation = 30.278896 kcal Electronic energy + Delta-G solvation = -27111.457011 eV Core-core repulsion = 23349.113939 eV Total energy + Delta-G solvation = -3762.343072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.61830 -41.61115 -39.18519 -38.01216 -36.52809 -35.48655 -34.86132 -33.01106 -31.95837 -31.76362 -30.23135 -27.97712 -26.30798 -25.29163 -25.02462 -24.20574 -23.08939 -21.81195 -20.84588 -19.70287 -19.57519 -18.92556 -18.38959 -17.80484 -17.27490 -16.77828 -16.53532 -16.24957 -16.00869 -15.80402 -15.34415 -15.12719 -14.89634 -14.77371 -14.62157 -14.31010 -14.15503 -13.58461 -13.22750 -13.16418 -13.10656 -12.81766 -12.79819 -12.77016 -12.65895 -12.53353 -12.21351 -12.03040 -11.48142 -11.44138 -11.15663 -10.90630 -10.83617 -10.42767 -10.16300 -9.96241 -9.70560 -8.86700 -8.13708 -6.20807 -0.76156 -0.43422 0.83066 1.37368 1.39147 1.42370 1.50536 1.78080 2.06021 2.42944 2.64786 2.96928 3.06073 3.16924 3.19536 3.39359 3.79582 3.94525 3.99088 4.11351 4.24871 4.26342 4.29481 4.39842 4.42859 4.52548 4.56025 4.66288 4.81981 4.89031 4.91827 4.99398 5.13886 5.18166 5.20543 5.32674 5.35804 5.40656 5.43687 5.64103 5.80180 5.85822 5.96141 5.98315 6.26141 6.36490 6.70454 6.72711 6.90239 7.27963 7.45726 8.94210 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.002793 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.382008 B =10023.859600 C =10812.043906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 0.943 3.057 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.612 5.612 13 C 0.703 3.297 14 O -0.605 6.605 15 N -0.661 5.661 16 C 0.182 3.818 17 C -0.144 4.144 18 C -0.064 4.064 19 C -0.116 4.116 20 C 0.079 3.921 21 N -0.448 5.448 22 C 0.089 3.911 23 C 0.076 3.924 24 N -0.451 5.451 25 C 0.037 3.963 26 C 0.138 3.862 27 C -0.106 4.106 28 H 0.261 0.739 29 H 0.013 0.987 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.421 0.579 35 H 0.152 0.848 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.219 0.781 39 H 0.215 0.785 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.462 -23.214 -3.798 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.181 4.181 3 Si 0.770 3.230 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.027 3.973 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.347 5.347 13 C 0.405 3.595 14 O -0.486 6.486 15 N -0.307 5.307 16 C 0.082 3.918 17 C -0.167 4.167 18 C -0.085 4.085 19 C -0.136 4.136 20 C -0.044 4.044 21 N -0.162 5.162 22 C -0.087 4.087 23 C -0.100 4.100 24 N -0.165 5.165 25 C -0.088 4.088 26 C 0.016 3.984 27 C -0.145 4.145 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.261 0.739 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.176 0.824 38 H 0.236 0.764 39 H 0.232 0.768 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.735 -22.846 -4.620 24.262 hybrid contribution 0.457 1.538 0.534 1.691 sum 7.192 -21.308 -4.086 22.858 Atomic orbital electron populations 1.70055 1.07048 1.27235 1.50934 1.25642 0.95521 1.02056 0.94865 0.85767 0.79126 0.80251 0.77874 1.20692 1.20950 1.19264 1.21524 0.94257 0.92615 1.48836 0.93166 1.18601 0.94128 0.92371 0.92227 1.21845 0.98045 0.94086 1.01247 1.21889 0.96857 0.98674 0.83456 1.47419 1.49718 1.21189 1.16327 1.15895 0.79408 0.80150 0.84032 1.90768 1.56497 1.80770 1.20542 1.42459 1.55607 1.18401 1.14270 1.17479 0.92681 0.89358 0.92238 1.21868 1.00706 0.99539 0.94594 1.21167 0.96832 0.92081 0.98384 1.20969 0.93903 1.01538 0.97222 1.19574 0.95154 0.93641 0.96033 1.68839 1.02350 1.23181 1.21839 1.24838 0.98713 0.96376 0.88816 1.24748 0.94123 0.90686 1.00480 1.68452 1.03961 1.24307 1.19825 1.19283 0.95479 0.98790 0.95276 1.21427 0.91866 0.84113 1.01034 1.21661 0.98384 0.95280 0.99203 0.93002 0.96872 0.90697 0.93893 0.89840 0.88827 0.73903 0.83062 0.81605 0.82363 0.76448 0.76821 0.90508 0.91279 0.92541 0.95493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.76 12.23 21.45 0.26 -51.50 16 2 C 0.02 1.01 5.18 84.66 0.44 1.45 16 3 Si 0.94 43.18 29.55 68.60 2.03 45.20 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.53 -28.59 8.47 25.60 0.22 -28.37 16 8 H 0.05 2.67 7.77 -2.91 -0.02 2.64 16 9 C 0.05 2.14 1.93 -11.51 -0.02 2.12 16 10 C -0.11 -4.27 5.30 30.67 0.16 -4.11 16 11 C 0.11 3.41 6.35 86.36 0.55 3.95 16 12 N -0.61 -21.17 2.98 -837.77 -2.50 -23.67 16 13 C 0.70 24.43 8.18 179.06 1.47 25.90 16 14 O -0.60 -23.97 12.69 -3.98 -0.05 -24.02 16 15 N -0.66 -19.23 5.14 -316.44 -1.63 -20.85 16 16 C 0.18 5.21 6.49 38.52 0.25 5.46 16 17 C -0.14 -3.91 8.77 22.39 0.20 -3.72 16 18 C -0.06 -1.31 9.94 22.01 0.22 -1.09 16 19 C -0.12 -2.35 9.96 22.34 0.22 -2.13 16 20 C 0.08 1.87 6.59 40.26 0.27 2.13 16 21 N -0.45 -9.06 10.47 -188.15 -1.97 -11.03 16 22 C 0.09 1.15 11.21 85.10 0.95 2.11 16 23 C 0.08 1.07 11.21 85.10 0.95 2.03 16 24 N -0.45 -10.26 9.91 -187.73 -1.86 -12.12 16 25 C 0.04 0.96 6.61 40.47 0.27 1.23 16 26 C 0.14 5.36 6.41 86.22 0.55 5.91 16 27 C -0.11 -4.89 5.20 30.53 0.16 -4.73 16 28 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 29 H 0.01 0.68 8.07 -2.38 -0.02 0.66 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 33 H 0.09 2.24 5.73 -2.39 -0.01 2.23 16 34 H 0.42 10.63 5.96 -92.71 -0.55 10.07 16 35 H 0.15 4.67 5.49 -2.91 -0.02 4.66 16 36 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.22 0.66 8.06 -2.91 -0.02 0.64 16 39 H 0.22 1.08 8.06 -2.91 -0.02 1.05 16 40 H 0.08 3.02 7.00 -2.39 -0.02 3.00 16 41 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.06 2.90 6.95 -2.38 -0.02 2.89 16 43 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -70.58 350.31 1.64 -68.94 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.50 Total: 20.92 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.85 Total: 8.13 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -7.69 Total: -119.18 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -70.58 1.64 -68.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880783756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.217 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds