Wall clock time and date at job start Tue Mar 31 2020 15:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99841 * 2 1 4 4 H 1.48495 * 109.47275 * 270.00649 * 3 2 1 5 5 H 1.48502 * 109.47064 * 30.00385 * 3 2 1 6 6 H 1.48496 * 109.47227 * 150.00274 * 3 2 1 7 7 C 1.37871 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99952 * 179.72079 * 7 2 1 9 9 C 1.50703 * 120.00054 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46789 * 179.72784 * 9 7 2 11 11 C 1.46493 * 120.00298 * 90.00238 * 10 9 7 12 12 C 1.53002 * 109.47519 * 89.99525 * 11 10 9 13 13 C 1.52999 * 117.49772 * 243.62440 * 12 11 10 14 14 C 1.52995 * 117.50189 * 175.00063 * 12 11 10 15 15 C 1.34779 * 119.99599 * 269.99696 * 10 9 7 16 16 O 1.21586 * 120.00236 * 0.02562 * 15 10 9 17 17 N 1.34778 * 119.99551 * 180.02562 * 15 10 9 18 18 C 1.39596 * 119.99625 * 174.90828 * 17 15 10 19 19 C 1.38385 * 119.79449 * 185.19727 * 18 17 15 20 20 C 1.40564 * 117.39420 * 179.75861 * 19 18 17 21 21 C 1.40302 * 122.10148 * 180.26419 * 20 19 18 22 22 C 1.36166 * 119.47610 * 180.31298 * 21 20 19 23 23 C 1.39419 * 120.91547 * 359.96248 * 22 21 20 24 24 C 1.36088 * 121.17919 * 359.97438 * 23 22 21 25 25 C 1.40546 * 119.64514 * 0.02562 * 24 23 22 26 26 N 1.33486 * 121.69966 * 179.97438 * 25 24 23 27 27 N 1.28455 * 121.61329 * 180.02562 * 26 25 24 28 28 H 0.97005 * 120.00365 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47162 * 299.72199 * 9 7 2 30 30 H 1.09001 * 109.47116 * 59.72650 * 9 7 2 31 31 H 1.09002 * 109.47445 * 209.99902 * 11 10 9 32 32 H 1.09001 * 109.47196 * 329.99694 * 11 10 9 33 33 H 1.09000 * 115.54638 * 29.33071 * 12 11 10 34 34 H 1.09002 * 117.50223 * 359.97438 * 13 12 11 35 35 H 1.09010 * 117.49801 * 145.01908 * 13 12 11 36 36 H 1.08997 * 117.50221 * 214.97736 * 14 12 11 37 37 H 1.09003 * 117.50009 * 0.02562 * 14 12 11 38 38 H 0.96991 * 120.00285 * 354.91874 * 17 15 10 39 39 H 1.08004 * 121.29894 * 0.02562 * 19 18 17 40 40 H 1.08001 * 120.26230 * 0.32137 * 21 20 19 41 41 H 1.08007 * 119.54374 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.41671 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.17942 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0051 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0077 11 6 2.6848 -4.1727 1.2573 12 6 1.7561 -5.3051 1.7003 13 6 0.9856 -5.1159 3.0085 14 6 2.1553 -6.1000 2.9451 15 6 2.6356 -4.1217 -1.1783 16 8 2.2361 -3.6567 -2.2282 17 7 3.5111 -5.1464 -1.1849 18 6 3.8776 -5.7435 -2.3923 19 6 4.6916 -6.8626 -2.3868 20 6 5.0250 -7.4259 -3.6307 21 6 5.8387 -8.5637 -3.7400 22 6 6.1332 -9.0610 -4.9729 23 6 5.6369 -8.4558 -6.1266 24 6 4.8439 -7.3519 -6.0578 25 6 4.5168 -6.8079 -4.8039 26 7 3.7430 -5.7264 -4.6887 27 7 3.4455 -5.2303 -3.5418 28 1 -0.4851 0.8401 0.0004 29 1 0.6284 -2.5592 0.8922 30 1 0.6203 -2.5546 -0.8878 31 1 3.6937 -4.5623 1.1214 32 1 2.6960 -3.3930 2.0190 33 1 1.2578 -5.8461 0.8960 34 1 1.1405 -4.1849 3.5538 35 1 -0.0202 -5.5325 3.0650 36 1 1.9192 -7.1640 2.9599 37 1 3.0793 -5.8161 3.4487 38 1 3.8864 -5.4691 -0.3507 39 1 5.0529 -7.2891 -1.4627 40 1 6.2283 -9.0413 -2.8531 41 1 6.7598 -9.9365 -5.0582 42 1 5.8854 -8.8708 -7.0923 43 1 4.4679 -6.8963 -6.9620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888608678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:20 Heat of formation + Delta-G solvation = 102.039042 kcal Electronic energy + Delta-G solvation = -26781.405395 eV Core-core repulsion = 23022.174077 eV Total energy + Delta-G solvation = -3759.231318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39799 -39.77372 -37.92924 -37.21384 -35.21691 -34.36269 -33.06061 -32.43124 -31.32055 -29.67991 -27.81537 -26.13860 -25.46029 -24.16294 -22.87902 -22.35749 -22.22162 -20.85975 -19.82673 -19.13302 -17.73787 -17.61135 -16.56551 -16.47674 -16.13216 -15.48477 -15.30041 -14.83215 -14.79138 -14.56537 -14.27313 -13.98136 -13.84065 -13.67854 -12.94874 -12.62238 -12.46558 -12.32542 -12.19673 -12.17729 -11.59706 -11.43020 -11.23619 -11.22227 -11.05803 -10.88453 -10.62540 -10.34255 -10.13020 -10.01655 -9.82388 -9.68736 -9.59122 -9.05028 -9.02394 -8.39919 -8.08256 -7.66908 -6.01214 -4.05718 -0.05933 0.68275 1.68501 2.73723 2.76779 3.34070 3.40645 3.42283 3.72842 3.83241 4.04034 4.07124 4.24096 4.29969 4.43020 4.49366 4.60815 4.68546 4.84155 4.90664 4.95987 4.99894 5.11708 5.32914 5.33174 5.36666 5.49768 5.55632 5.63546 5.67159 5.70823 5.91127 6.00173 6.01097 6.05378 6.12160 6.20127 6.38094 6.45903 6.64934 6.70988 7.31754 7.49827 7.60268 7.95913 8.25387 8.45663 8.83289 8.95258 9.24066 9.59461 11.06758 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.003342 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.397299 B = 8375.751694 C =10091.460882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.263 3.737 10 N -0.602 5.602 11 C 0.142 3.858 12 C -0.172 4.172 13 C -0.170 4.170 14 C -0.182 4.182 15 C 0.685 3.315 16 O -0.518 6.518 17 N -0.668 5.668 18 C 0.317 3.683 19 C -0.161 4.161 20 C -0.031 4.031 21 C -0.115 4.115 22 C -0.090 4.090 23 C -0.122 4.122 24 C -0.059 4.059 25 C 0.022 3.978 26 N -0.171 5.171 27 N -0.191 5.191 28 H 0.263 0.737 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.410 0.590 39 H 0.151 0.849 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.044 -21.333 -0.948 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.144 3.856 10 N -0.337 5.337 11 C 0.017 3.983 12 C -0.191 4.191 13 C -0.207 4.207 14 C -0.220 4.220 15 C 0.386 3.614 16 O -0.387 6.387 17 N -0.318 5.318 18 C 0.089 3.911 19 C -0.196 4.196 20 C -0.040 4.040 21 C -0.134 4.134 22 C -0.109 4.109 23 C -0.143 4.143 24 C -0.080 4.080 25 C -0.108 4.108 26 N -0.027 5.027 27 N -0.051 5.051 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.248 0.752 39 H 0.169 0.831 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.579 -19.539 -2.267 22.334 hybrid contribution 1.479 -0.361 1.334 2.025 sum 12.058 -19.900 -0.933 23.287 Atomic orbital electron populations 1.69929 1.05947 1.26992 1.50403 1.24904 0.94856 0.99124 0.95071 0.86515 0.79584 0.83130 0.78272 1.20508 1.21190 1.20024 1.21444 0.93346 0.90715 1.51111 0.92526 1.19258 0.86664 0.81031 0.98670 1.47612 1.47840 1.36430 1.01821 1.20987 0.94348 0.94666 0.88261 1.22946 1.03391 1.00732 0.92048 1.22990 0.96246 1.01089 1.00405 1.22939 0.99842 0.97288 1.01928 1.16076 0.79974 0.79682 0.85689 1.91068 1.58284 1.59781 1.29553 1.43169 1.46525 1.35863 1.06273 1.19767 0.92485 0.90323 0.88483 1.21702 1.02173 0.96920 0.98827 1.18548 0.96858 0.96016 0.92583 1.20870 0.98575 0.95394 0.98594 1.21028 0.98277 0.99330 0.92298 1.20919 0.98236 0.96169 0.99020 1.20797 0.96232 0.95074 0.95876 1.20438 0.99527 0.96387 0.94481 1.74006 1.06770 1.06113 1.15802 1.73818 1.16359 1.22025 0.92861 0.92722 0.94554 0.93648 0.92180 0.89156 0.87935 0.88302 0.89076 0.89147 0.88790 0.75163 0.83120 0.84841 0.85262 0.85045 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.26 6.83 5.16 -5.19 -0.03 6.81 16 10 N -0.60 -12.60 2.46 -180.80 -0.44 -13.04 16 11 C 0.14 2.19 5.50 -4.04 -0.02 2.16 16 12 C -0.17 -2.28 6.01 -90.62 -0.54 -2.82 16 13 C -0.17 -2.11 10.18 -26.73 -0.27 -2.38 16 14 C -0.18 -1.85 10.25 -26.73 -0.27 -2.13 16 15 C 0.69 14.89 8.24 -86.91 -0.72 14.17 16 16 O -0.52 -13.91 14.19 5.29 0.08 -13.84 16 17 N -0.67 -10.96 5.27 -15.76 -0.08 -11.04 16 18 C 0.32 5.30 7.49 -154.12 -1.15 4.15 16 19 C -0.16 -1.96 9.84 -38.65 -0.38 -2.34 16 20 C -0.03 -0.38 5.75 -106.80 -0.61 -0.99 16 21 C -0.12 -0.98 9.81 -39.55 -0.39 -1.37 16 22 C -0.09 -0.65 9.96 -39.89 -0.40 -1.04 16 23 C -0.12 -0.96 9.94 -39.91 -0.40 -1.36 16 24 C -0.06 -0.63 10.00 -39.48 -0.40 -1.03 16 25 C 0.02 0.32 6.69 -84.84 -0.57 -0.25 16 26 N -0.17 -3.12 11.54 32.23 0.37 -2.75 16 27 N -0.19 -3.91 9.02 31.23 0.28 -3.63 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 31 H 0.06 0.74 6.29 -51.93 -0.33 0.41 16 32 H 0.09 1.46 7.81 -51.93 -0.41 1.05 16 33 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.10 1.26 8.03 -51.93 -0.42 0.84 16 35 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.41 5.00 6.40 -40.82 -0.26 4.74 16 39 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 43 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 369.28 15.07 5.56 5.56 Total: -1.00 -36.48 369.28 -10.65 -47.13 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.57 Total: 2.44 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -6.57 Total: -2.01 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.86 Total: -56.41 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.84 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.48 -10.65 -47.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888608678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.169 kcal (2) G-P(sol) polarization free energy of solvation -36.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds