Wall clock time and date at job start Tue Mar 31 2020 15:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99841 * 2 1 4 4 H 1.48495 * 109.47275 * 270.00649 * 3 2 1 5 5 H 1.48502 * 109.47064 * 30.00385 * 3 2 1 6 6 H 1.48496 * 109.47227 * 150.00274 * 3 2 1 7 7 C 1.37871 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99952 * 179.72079 * 7 2 1 9 9 C 1.50703 * 120.00054 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46789 * 179.72784 * 9 7 2 11 11 C 1.46493 * 120.00298 * 90.00238 * 10 9 7 12 12 C 1.53002 * 109.47519 * 89.99525 * 11 10 9 13 13 C 1.52999 * 117.49772 * 243.62440 * 12 11 10 14 14 C 1.52995 * 117.50189 * 175.00063 * 12 11 10 15 15 C 1.34779 * 119.99599 * 269.99696 * 10 9 7 16 16 O 1.21586 * 120.00236 * 0.02562 * 15 10 9 17 17 N 1.34778 * 119.99551 * 180.02562 * 15 10 9 18 18 C 1.39596 * 119.99625 * 174.90828 * 17 15 10 19 19 C 1.38385 * 119.79449 * 185.19727 * 18 17 15 20 20 C 1.40564 * 117.39420 * 179.75861 * 19 18 17 21 21 C 1.40302 * 122.10148 * 180.26419 * 20 19 18 22 22 C 1.36166 * 119.47610 * 180.31298 * 21 20 19 23 23 C 1.39419 * 120.91547 * 359.96248 * 22 21 20 24 24 C 1.36088 * 121.17919 * 359.97438 * 23 22 21 25 25 C 1.40546 * 119.64514 * 0.02562 * 24 23 22 26 26 N 1.33486 * 121.69966 * 179.97438 * 25 24 23 27 27 N 1.28455 * 121.61329 * 180.02562 * 26 25 24 28 28 H 0.97005 * 120.00365 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47162 * 299.72199 * 9 7 2 30 30 H 1.09001 * 109.47116 * 59.72650 * 9 7 2 31 31 H 1.09002 * 109.47445 * 209.99902 * 11 10 9 32 32 H 1.09001 * 109.47196 * 329.99694 * 11 10 9 33 33 H 1.09000 * 115.54638 * 29.33071 * 12 11 10 34 34 H 1.09002 * 117.50223 * 359.97438 * 13 12 11 35 35 H 1.09010 * 117.49801 * 145.01908 * 13 12 11 36 36 H 1.08997 * 117.50221 * 214.97736 * 14 12 11 37 37 H 1.09003 * 117.50009 * 0.02562 * 14 12 11 38 38 H 0.96991 * 120.00285 * 354.91874 * 17 15 10 39 39 H 1.08004 * 121.29894 * 0.02562 * 19 18 17 40 40 H 1.08001 * 120.26230 * 0.32137 * 21 20 19 41 41 H 1.08007 * 119.54374 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.41671 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.17942 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0051 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0077 11 6 2.6848 -4.1727 1.2573 12 6 1.7561 -5.3051 1.7003 13 6 0.9856 -5.1159 3.0085 14 6 2.1553 -6.1000 2.9451 15 6 2.6356 -4.1217 -1.1783 16 8 2.2361 -3.6567 -2.2282 17 7 3.5111 -5.1464 -1.1849 18 6 3.8776 -5.7435 -2.3923 19 6 4.6916 -6.8626 -2.3868 20 6 5.0250 -7.4259 -3.6307 21 6 5.8387 -8.5637 -3.7400 22 6 6.1332 -9.0610 -4.9729 23 6 5.6369 -8.4558 -6.1266 24 6 4.8439 -7.3519 -6.0578 25 6 4.5168 -6.8079 -4.8039 26 7 3.7430 -5.7264 -4.6887 27 7 3.4455 -5.2303 -3.5418 28 1 -0.4851 0.8401 0.0004 29 1 0.6284 -2.5592 0.8922 30 1 0.6203 -2.5546 -0.8878 31 1 3.6937 -4.5623 1.1214 32 1 2.6960 -3.3930 2.0190 33 1 1.2578 -5.8461 0.8960 34 1 1.1405 -4.1849 3.5538 35 1 -0.0202 -5.5325 3.0650 36 1 1.9192 -7.1640 2.9599 37 1 3.0793 -5.8161 3.4487 38 1 3.8864 -5.4691 -0.3507 39 1 5.0529 -7.2891 -1.4627 40 1 6.2283 -9.0413 -2.8531 41 1 6.7598 -9.9365 -5.0582 42 1 5.8854 -8.8708 -7.0923 43 1 4.4679 -6.8963 -6.9620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888608678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:19 Heat of formation + Delta-G solvation = 78.310183 kcal Electronic energy + Delta-G solvation = -26782.434356 eV Core-core repulsion = 23022.174077 eV Total energy + Delta-G solvation = -3760.260279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.48034 -41.20859 -38.89919 -38.33067 -36.59380 -36.02449 -34.66431 -33.88926 -32.25672 -30.80483 -29.55340 -27.65487 -26.47352 -25.59343 -24.34450 -23.31147 -23.16994 -22.05099 -21.16759 -20.20380 -19.01725 -18.88836 -18.58025 -17.63358 -17.17414 -16.82592 -16.65058 -16.21476 -16.02707 -15.72955 -15.50966 -15.16002 -15.01070 -14.60285 -14.40143 -14.35167 -13.76090 -13.47316 -13.33173 -13.21399 -12.94457 -12.87018 -12.67559 -12.59158 -12.44417 -12.28889 -12.22093 -12.01935 -11.72705 -11.32356 -11.09701 -10.97871 -10.81760 -10.64138 -10.42009 -10.05465 -9.50431 -8.99013 -8.21540 -6.36093 -0.95555 -0.26070 0.83991 1.34424 1.38571 1.41579 1.48928 1.77220 2.30346 2.39618 2.68242 2.94989 2.98447 3.07934 3.19278 3.38611 3.58789 3.73065 3.86224 3.87970 3.99444 4.14539 4.21803 4.23713 4.34278 4.45614 4.53264 4.58537 4.74184 4.79296 4.85968 4.95159 5.03800 5.06901 5.14517 5.21324 5.27258 5.33503 5.34890 5.41502 5.46265 5.55850 5.74068 5.85012 5.96171 6.06436 6.72421 6.93057 7.30362 7.56424 7.80405 8.85368 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.003342 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.397299 B = 8375.751694 C =10091.460882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.052 0.948 9 C 0.284 3.716 10 N -0.606 5.606 11 C 0.140 3.860 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.138 4.138 15 C 0.684 3.316 16 O -0.584 6.584 17 N -0.648 5.648 18 C 0.277 3.723 19 C -0.122 4.122 20 C -0.050 4.050 21 C -0.108 4.108 22 C -0.081 4.081 23 C -0.090 4.090 24 C -0.099 4.099 25 C 0.012 3.988 26 N -0.227 5.227 27 N -0.262 5.262 28 H 0.267 0.733 29 H 0.030 0.970 30 H -0.007 1.007 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.430 0.570 39 H 0.203 0.797 40 H 0.175 0.825 41 H 0.176 0.824 42 H 0.169 0.831 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.227 -25.306 0.385 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.211 1.211 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.070 0.930 9 C 0.162 3.838 10 N -0.340 5.340 11 C 0.017 3.983 12 C -0.209 4.209 13 C -0.226 4.226 14 C -0.175 4.175 15 C 0.385 3.615 16 O -0.458 6.458 17 N -0.302 5.302 18 C 0.048 3.952 19 C -0.156 4.156 20 C -0.059 4.059 21 C -0.126 4.126 22 C -0.100 4.100 23 C -0.111 4.111 24 C -0.120 4.120 25 C -0.121 4.121 26 N -0.080 5.080 27 N -0.118 5.118 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.011 0.989 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.273 0.727 39 H 0.220 0.780 40 H 0.192 0.808 41 H 0.193 0.807 42 H 0.186 0.814 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.802 -23.567 -0.911 27.845 hybrid contribution 0.328 0.559 0.761 1.000 sum 15.130 -23.008 -0.150 27.537 Atomic orbital electron populations 1.70052 1.07515 1.28107 1.51052 1.25825 0.95784 1.02930 0.94490 0.85447 0.78922 0.78616 0.77997 1.21127 1.19699 1.18433 1.21714 0.93217 0.91995 1.51102 0.92982 1.18616 0.86997 0.82518 0.95657 1.47410 1.47123 1.35571 1.03942 1.21266 0.96622 0.95046 0.85331 1.22708 1.04331 1.01204 0.92631 1.23064 0.97530 1.02123 0.99884 1.23058 0.99189 0.97661 0.97599 1.16245 0.80229 0.80319 0.84713 1.91016 1.60752 1.62182 1.31875 1.42558 1.45620 1.34576 1.07438 1.19969 0.95178 0.92560 0.87486 1.22222 0.98445 0.93947 1.00983 1.18971 0.97789 0.97466 0.91640 1.21334 0.96847 0.93464 1.00974 1.21622 0.97311 0.99920 0.91180 1.21461 0.94618 0.93608 1.01409 1.20979 0.99009 0.97270 0.94739 1.20995 0.98603 0.95482 0.96982 1.73835 1.09748 1.08865 1.15510 1.73533 1.19017 1.24757 0.94521 0.92418 0.95239 0.98896 0.88472 0.90021 0.89513 0.89055 0.89064 0.87019 0.86593 0.72744 0.77992 0.80811 0.80677 0.81375 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.88 13.29 21.44 0.28 -57.59 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.97 46.61 29.54 68.60 2.03 48.64 16 4 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.28 15.93 5.16 85.63 0.44 16.38 16 10 N -0.61 -26.93 2.46 -844.18 -2.07 -29.01 16 11 C 0.14 4.31 5.50 86.38 0.47 4.78 16 12 C -0.19 -4.92 6.01 -10.79 -0.06 -4.99 16 13 C -0.19 -4.57 10.18 30.59 0.31 -4.26 16 14 C -0.14 -2.36 10.25 30.59 0.31 -2.04 16 15 C 0.68 31.89 8.24 179.05 1.48 33.36 16 16 O -0.58 -34.60 14.19 -3.99 -0.06 -34.66 16 17 N -0.65 -21.84 5.27 -322.03 -1.70 -23.54 16 18 C 0.28 9.56 7.49 132.47 0.99 10.55 16 19 C -0.12 -2.70 9.84 22.87 0.23 -2.48 16 20 C -0.05 -1.09 5.75 -21.28 -0.12 -1.21 16 21 C -0.11 -1.23 9.81 22.29 0.22 -1.02 16 22 C -0.08 -0.67 9.96 22.07 0.22 -0.45 16 23 C -0.09 -1.03 9.94 22.05 0.22 -0.82 16 24 C -0.10 -2.06 10.00 22.33 0.22 -1.83 16 25 C 0.01 0.35 6.69 40.39 0.27 0.62 16 26 N -0.23 -9.06 11.54 -51.95 -0.60 -9.66 16 27 N -0.26 -11.69 9.02 -55.12 -0.50 -12.18 16 28 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 29 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 30 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 31 H 0.10 2.20 6.29 -2.39 -0.02 2.19 16 32 H 0.08 2.65 7.81 -2.39 -0.02 2.63 16 33 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.09 2.33 8.03 -2.39 -0.02 2.31 16 35 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.43 9.92 6.40 -92.72 -0.59 9.32 16 39 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 41 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 42 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 43 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -93.01 369.28 3.74 -89.28 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.45 Total: 13.24 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.90 Total: 15.49 kcal Atomic # 7 Polarization: -127.40 SS G_CDS: -4.58 Total: -131.98 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.06 Total: -34.66 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -93.01 3.74 -89.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888608678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.586 kcal (2) G-P(sol) polarization free energy of solvation -93.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds