Wall clock time and date at job start Tue Mar 31 2020 15:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99933 * 2 1 4 4 H 1.48495 * 109.47575 * 240.00164 * 3 2 1 5 5 H 1.48501 * 109.46943 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47012 * 120.00188 * 3 2 1 7 7 C 1.37880 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99773 * 359.72475 * 7 2 1 10 10 H 1.08991 * 109.50322 * 60.27775 * 9 7 2 11 11 C 1.53044 * 109.49771 * 180.34196 * 9 7 2 12 12 C 1.53036 * 109.54206 * 181.31167 * 11 9 7 13 13 C 1.53188 * 109.31587 * 298.63889 * 12 11 9 14 14 N 1.46929 * 108.77675 * 54.62831 * 13 12 11 15 15 C 1.34778 * 120.63044 * 126.39630 * 14 13 12 16 16 O 1.21580 * 119.99915 * 174.99535 * 15 14 13 17 17 N 1.34773 * 119.99794 * 354.98617 * 15 14 13 18 18 C 1.39596 * 120.00111 * 185.76925 * 17 15 14 19 19 C 1.38391 * 119.78925 * 16.76839 * 18 17 15 20 20 C 1.40567 * 117.38830 * 179.97438 * 19 18 17 21 21 C 1.40301 * 122.10305 * 180.02562 * 20 19 18 22 22 C 1.36170 * 119.47987 * 180.02562 * 21 20 19 23 23 C 1.39430 * 120.91276 * 359.95743 * 22 21 20 24 24 C 1.36085 * 121.17268 * 0.02562 * 23 22 21 25 25 C 1.40545 * 119.65282 * 0.02562 * 24 23 22 26 26 N 1.33484 * 121.69687 * 180.02562 * 25 24 23 27 27 N 1.28450 * 121.61032 * 179.72862 * 26 25 24 28 28 C 1.46932 * 118.76607 * 306.41763 * 14 13 12 29 29 H 0.96998 * 120.00536 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.45658 * 301.33716 * 11 9 7 31 31 H 1.09003 * 109.45750 * 61.30774 * 11 9 7 32 32 H 1.09013 * 109.49227 * 58.58442 * 12 11 9 33 33 H 1.08988 * 109.50136 * 178.68145 * 12 11 9 34 34 H 1.08992 * 109.58952 * 174.41758 * 13 12 11 35 35 H 1.09002 * 109.58468 * 294.84705 * 13 12 11 36 36 H 0.97001 * 120.00265 * 5.77570 * 17 15 14 37 37 H 1.08001 * 121.30249 * 359.97438 * 19 18 17 38 38 H 1.08005 * 120.26168 * 359.95455 * 21 20 19 39 39 H 1.07993 * 119.54844 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.41620 * 180.02562 * 23 22 21 41 41 H 1.07996 * 120.17318 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.56001 * 293.78538 * 28 14 13 43 43 H 1.08994 * 109.61722 * 173.35837 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 0.0052 10 1 0.6243 -2.5613 -0.8843 11 6 2.2450 -3.6628 0.0119 12 6 1.4812 -4.9886 -0.0153 13 6 0.6047 -5.0942 1.2365 14 7 -0.2540 -3.9045 1.3144 15 6 -1.5905 -4.0291 1.4358 16 8 -2.2815 -3.0408 1.5907 17 7 -2.1609 -5.2491 1.3853 18 6 -3.5516 -5.3701 1.3898 19 6 -4.3385 -4.2698 1.0977 20 6 -5.7326 -4.4486 1.1162 21 6 -6.6225 -3.4010 0.8349 22 6 -7.9637 -3.6337 0.8685 23 6 -8.4638 -4.8981 1.1775 24 6 -7.6297 -5.9369 1.4551 25 6 -6.2387 -5.7372 1.4319 26 7 -5.3835 -6.7271 1.6972 27 7 -4.1124 -6.5440 1.6704 28 6 0.3713 -2.5762 1.2569 29 1 -0.4851 0.8400 -0.0004 30 1 2.8881 -3.5961 -0.8656 31 1 2.8552 -3.6140 0.9139 32 1 0.8518 -5.0276 -0.9045 33 1 2.1899 -5.8165 -0.0341 34 1 -0.0150 -5.9887 1.1743 35 1 1.2376 -5.1465 2.1224 36 1 -1.6052 -6.0431 1.3460 37 1 -3.8986 -3.3113 0.8648 38 1 -6.2467 -2.4173 0.5947 39 1 -8.6497 -2.8281 0.6525 40 1 -9.5319 -5.0558 1.1968 41 1 -8.0346 -6.9095 1.6929 42 1 0.9849 -2.4230 2.1447 43 1 -0.4019 -1.8095 1.2079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888620777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:13 Heat of formation + Delta-G solvation = 66.286909 kcal Electronic energy + Delta-G solvation = -27184.092588 eV Core-core repulsion = 23423.310940 eV Total energy + Delta-G solvation = -3760.781647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48726 -40.12987 -37.99431 -37.14709 -34.97275 -33.69396 -32.87491 -31.91537 -31.36451 -29.98236 -29.37566 -25.50611 -25.22801 -25.02390 -23.61310 -22.35744 -21.98284 -20.64508 -19.37502 -18.79178 -18.44010 -17.32292 -16.63335 -16.26392 -16.18313 -15.58596 -15.01670 -14.83862 -14.53176 -14.47428 -14.09957 -13.94104 -13.75923 -13.37349 -13.05470 -12.71165 -12.61700 -12.40583 -12.29478 -12.18129 -12.03517 -11.24356 -11.16539 -11.05677 -10.96434 -10.61137 -10.50705 -10.32827 -10.07027 -10.01314 -9.99000 -9.38795 -9.21758 -9.09306 -9.06404 -8.52213 -8.14011 -7.80739 -6.08035 -4.16462 -0.00390 0.63510 1.76732 2.50641 2.69018 3.27542 3.33762 3.34936 3.42596 3.88830 3.94985 4.19708 4.33041 4.37255 4.53403 4.66902 4.78225 5.01572 5.07667 5.10112 5.22702 5.34286 5.40963 5.49700 5.52925 5.72808 5.85869 5.87061 6.02823 6.07348 6.16393 6.20319 6.23045 6.38266 6.52388 6.56394 6.66353 6.67915 6.85415 6.88370 7.11497 7.20123 7.58982 7.77843 7.91876 8.15925 8.29520 8.61245 8.76735 8.87601 9.49514 10.97407 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003207 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.028255 B = 8727.571587 C =10258.608850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.064 3.936 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.109 3.891 14 N -0.608 5.608 15 C 0.704 3.296 16 O -0.562 6.562 17 N -0.666 5.666 18 C 0.296 3.704 19 C -0.110 4.110 20 C -0.048 4.048 21 C -0.097 4.097 22 C -0.100 4.100 23 C -0.109 4.109 24 C -0.074 4.074 25 C 0.038 3.962 26 N -0.187 5.187 27 N -0.252 5.252 28 C 0.126 3.874 29 H 0.265 0.735 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.412 0.588 37 H 0.194 0.806 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.046 0.954 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.290 -11.014 1.780 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.015 4.015 14 N -0.343 5.343 15 C 0.405 3.595 16 O -0.439 6.439 17 N -0.317 5.317 18 C 0.069 3.931 19 C -0.144 4.144 20 C -0.057 4.057 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.095 4.095 25 C -0.094 4.094 26 N -0.041 5.041 27 N -0.110 5.110 28 C 0.006 3.994 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.251 0.749 37 H 0.211 0.789 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.064 0.936 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.510 -11.632 2.274 16.522 hybrid contribution 0.654 1.837 -0.332 1.978 sum -10.856 -9.796 1.941 14.750 Atomic orbital electron populations 1.69848 1.05757 1.27063 1.49174 1.25046 0.94911 0.99310 0.94690 0.86631 0.79584 0.83027 0.78622 1.20262 1.21226 1.20216 1.21029 0.92935 0.89997 1.52051 0.92294 1.18994 0.92630 0.92422 0.93897 0.95212 1.21632 0.98580 0.93858 1.00821 1.21952 0.98668 0.99430 0.97141 1.21655 0.93534 0.86953 0.99359 1.47917 1.02709 1.09833 1.73811 1.15823 0.83196 0.81931 0.78515 1.90775 1.60687 1.36344 1.56128 1.42635 1.03316 1.09817 1.75898 1.19425 0.85365 0.92161 0.96168 1.23332 0.91668 1.02569 0.96791 1.18851 0.94138 0.94340 0.98350 1.21061 0.92971 0.98540 0.99005 1.21055 0.95443 0.97325 0.98162 1.20951 1.00268 0.92692 0.99074 1.20683 0.89937 1.00117 0.98800 1.20275 0.96040 0.91162 1.01904 1.73625 0.95364 1.25958 1.09102 1.72734 1.05595 1.20196 1.12488 1.22389 0.98553 0.79661 0.98783 0.92533 0.92796 0.93005 0.92016 0.91896 0.91927 0.91272 0.74920 0.78922 0.84252 0.85064 0.85006 0.84316 0.93596 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.52 11.38 55.43 0.63 -23.89 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.50 8.57 -34.44 -0.30 -13.80 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.93 2.25 -91.65 -0.21 0.72 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.07 5.11 -26.69 -0.14 -2.20 16 12 C -0.13 -1.98 6.08 -26.62 -0.16 -2.14 16 13 C 0.11 1.56 6.43 -3.71 -0.02 1.53 16 14 N -0.61 -11.41 2.97 -178.50 -0.53 -11.94 16 15 C 0.70 13.54 8.16 -86.92 -0.71 12.84 16 16 O -0.56 -12.61 12.54 5.30 0.07 -12.54 16 17 N -0.67 -10.63 5.34 -15.76 -0.08 -10.71 16 18 C 0.30 4.95 7.62 -154.13 -1.17 3.78 16 19 C -0.11 -1.84 8.72 -38.65 -0.34 -2.18 16 20 C -0.05 -0.70 5.75 -106.80 -0.61 -1.32 16 21 C -0.10 -1.14 9.81 -39.55 -0.39 -1.53 16 22 C -0.10 -0.92 9.96 -39.88 -0.40 -1.32 16 23 C -0.11 -0.94 9.94 -39.91 -0.40 -1.33 16 24 C -0.07 -0.79 10.00 -39.49 -0.39 -1.19 16 25 C 0.04 0.54 6.69 -84.84 -0.57 -0.03 16 26 N -0.19 -2.94 11.54 32.23 0.37 -2.57 16 27 N -0.25 -4.14 11.51 31.23 0.36 -3.78 16 28 C 0.13 2.87 5.38 -3.71 -0.02 2.85 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.06 0.76 8.14 -51.94 -0.42 0.33 16 34 H 0.06 0.71 5.57 -51.93 -0.29 0.42 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.41 5.42 6.28 -40.82 -0.26 5.16 16 37 H 0.19 3.57 5.28 -52.57 -0.28 3.30 16 38 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.13 3.33 5.14 -51.93 -0.27 3.07 16 LS Contribution 349.44 15.07 5.27 5.27 Total: -1.00 -30.47 349.44 -10.14 -40.61 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.28 Total: 7.74 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -5.91 Total: -3.73 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.75 Total: -52.89 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.54 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.47 -10.14 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888620777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.894 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds