Wall clock time and date at job start Tue Mar 31 2020 15:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99933 * 2 1 4 4 H 1.48495 * 109.47575 * 240.00164 * 3 2 1 5 5 H 1.48501 * 109.46943 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47012 * 120.00188 * 3 2 1 7 7 C 1.37880 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99773 * 359.72475 * 7 2 1 10 10 H 1.08991 * 109.50322 * 60.27775 * 9 7 2 11 11 C 1.53044 * 109.49771 * 180.34196 * 9 7 2 12 12 C 1.53036 * 109.54206 * 181.31167 * 11 9 7 13 13 C 1.53188 * 109.31587 * 298.63889 * 12 11 9 14 14 N 1.46929 * 108.77675 * 54.62831 * 13 12 11 15 15 C 1.34778 * 120.63044 * 126.39630 * 14 13 12 16 16 O 1.21580 * 119.99915 * 174.99535 * 15 14 13 17 17 N 1.34773 * 119.99794 * 354.98617 * 15 14 13 18 18 C 1.39596 * 120.00111 * 185.76925 * 17 15 14 19 19 C 1.38391 * 119.78925 * 16.76839 * 18 17 15 20 20 C 1.40567 * 117.38830 * 179.97438 * 19 18 17 21 21 C 1.40301 * 122.10305 * 180.02562 * 20 19 18 22 22 C 1.36170 * 119.47987 * 180.02562 * 21 20 19 23 23 C 1.39430 * 120.91276 * 359.95743 * 22 21 20 24 24 C 1.36085 * 121.17268 * 0.02562 * 23 22 21 25 25 C 1.40545 * 119.65282 * 0.02562 * 24 23 22 26 26 N 1.33484 * 121.69687 * 180.02562 * 25 24 23 27 27 N 1.28450 * 121.61032 * 179.72862 * 26 25 24 28 28 C 1.46932 * 118.76607 * 306.41763 * 14 13 12 29 29 H 0.96998 * 120.00536 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.45658 * 301.33716 * 11 9 7 31 31 H 1.09003 * 109.45750 * 61.30774 * 11 9 7 32 32 H 1.09013 * 109.49227 * 58.58442 * 12 11 9 33 33 H 1.08988 * 109.50136 * 178.68145 * 12 11 9 34 34 H 1.08992 * 109.58952 * 174.41758 * 13 12 11 35 35 H 1.09002 * 109.58468 * 294.84705 * 13 12 11 36 36 H 0.97001 * 120.00265 * 5.77570 * 17 15 14 37 37 H 1.08001 * 121.30249 * 359.97438 * 19 18 17 38 38 H 1.08005 * 120.26168 * 359.95455 * 21 20 19 39 39 H 1.07993 * 119.54844 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.41620 * 180.02562 * 23 22 21 41 41 H 1.07996 * 120.17318 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.56001 * 293.78538 * 28 14 13 43 43 H 1.08994 * 109.61722 * 173.35837 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 0.0052 10 1 0.6243 -2.5613 -0.8843 11 6 2.2450 -3.6628 0.0119 12 6 1.4812 -4.9886 -0.0153 13 6 0.6047 -5.0942 1.2365 14 7 -0.2540 -3.9045 1.3144 15 6 -1.5905 -4.0291 1.4358 16 8 -2.2815 -3.0408 1.5907 17 7 -2.1609 -5.2491 1.3853 18 6 -3.5516 -5.3701 1.3898 19 6 -4.3385 -4.2698 1.0977 20 6 -5.7326 -4.4486 1.1162 21 6 -6.6225 -3.4010 0.8349 22 6 -7.9637 -3.6337 0.8685 23 6 -8.4638 -4.8981 1.1775 24 6 -7.6297 -5.9369 1.4551 25 6 -6.2387 -5.7372 1.4319 26 7 -5.3835 -6.7271 1.6972 27 7 -4.1124 -6.5440 1.6704 28 6 0.3713 -2.5762 1.2569 29 1 -0.4851 0.8400 -0.0004 30 1 2.8881 -3.5961 -0.8656 31 1 2.8552 -3.6140 0.9139 32 1 0.8518 -5.0276 -0.9045 33 1 2.1899 -5.8165 -0.0341 34 1 -0.0150 -5.9887 1.1743 35 1 1.2376 -5.1465 2.1224 36 1 -1.6052 -6.0431 1.3460 37 1 -3.8986 -3.3113 0.8648 38 1 -6.2467 -2.4173 0.5947 39 1 -8.6497 -2.8281 0.6525 40 1 -9.5319 -5.0558 1.1968 41 1 -8.0346 -6.9095 1.6929 42 1 0.9849 -2.4230 2.1447 43 1 -0.4019 -1.8095 1.2079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888620777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:13 Heat of formation + Delta-G solvation = 48.363819 kcal Electronic energy + Delta-G solvation = -27184.869791 eV Core-core repulsion = 23423.310940 eV Total energy + Delta-G solvation = -3761.558851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.67319 -41.49966 -39.13461 -38.53078 -36.36351 -35.38669 -34.17208 -33.37406 -32.40668 -31.57991 -30.53946 -27.11908 -26.63299 -26.36174 -24.83470 -23.52573 -23.32785 -22.11401 -20.77721 -20.06306 -19.64919 -18.76109 -18.13832 -17.74517 -17.27513 -16.95461 -16.58587 -16.14421 -16.05295 -15.59859 -15.30397 -15.22040 -15.13529 -14.58517 -14.51747 -14.27395 -14.12090 -13.60723 -13.49514 -13.40542 -13.00495 -12.85712 -12.73056 -12.50322 -12.29841 -12.26245 -12.11706 -11.86000 -11.65694 -11.39884 -11.14188 -11.02174 -10.92849 -10.64154 -10.51526 -10.13955 -9.56832 -9.03355 -8.10937 -6.26951 -1.06144 -0.43025 0.75628 1.13466 1.42949 1.43744 1.51569 1.58556 2.08187 2.41583 2.56616 2.88269 3.11704 3.18070 3.26676 3.51315 3.64103 3.82812 3.93906 4.09410 4.17217 4.21238 4.25186 4.47807 4.54431 4.57376 4.68850 4.70055 4.77974 4.80020 4.95810 5.05990 5.08839 5.18876 5.23907 5.27035 5.31928 5.34043 5.39738 5.50367 5.56576 5.73283 5.79941 5.90251 6.02745 6.33145 6.72090 6.85187 7.26255 7.42885 7.44343 8.92377 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003207 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.028255 B = 8727.571587 C =10258.608850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.011 1.011 11 C -0.106 4.106 12 C -0.125 4.125 13 C 0.102 3.898 14 N -0.611 5.611 15 C 0.701 3.299 16 O -0.603 6.603 17 N -0.649 5.649 18 C 0.280 3.720 19 C -0.135 4.135 20 C -0.056 4.056 21 C -0.128 4.128 22 C -0.073 4.073 23 C -0.089 4.089 24 C -0.082 4.082 25 C 0.025 3.975 26 N -0.196 5.196 27 N -0.263 5.263 28 C 0.142 3.858 29 H 0.260 0.740 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.425 0.575 37 H 0.168 0.832 38 H 0.139 0.861 39 H 0.170 0.830 40 H 0.180 0.820 41 H 0.163 0.837 42 H 0.042 0.958 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.815 -12.672 2.040 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.007 0.993 11 C -0.144 4.144 12 C -0.163 4.163 13 C -0.020 4.020 14 N -0.345 5.345 15 C 0.402 3.598 16 O -0.482 6.482 17 N -0.302 5.302 18 C 0.054 3.946 19 C -0.168 4.168 20 C -0.065 4.065 21 C -0.147 4.147 22 C -0.092 4.092 23 C -0.110 4.110 24 C -0.103 4.103 25 C -0.107 4.107 26 N -0.049 5.049 27 N -0.121 5.121 28 C 0.020 3.980 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.266 0.734 37 H 0.185 0.815 38 H 0.157 0.843 39 H 0.188 0.812 40 H 0.197 0.803 41 H 0.181 0.819 42 H 0.060 0.940 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.007 -13.360 2.529 18.817 hybrid contribution 0.868 2.360 -0.443 2.553 sum -12.140 -10.999 2.086 16.514 Atomic orbital electron populations 1.70041 1.07270 1.27349 1.50447 1.25845 0.95568 1.02735 0.94573 0.85653 0.78317 0.78974 0.78982 1.19495 1.21492 1.19332 1.21467 0.93323 0.91375 1.51257 0.91938 1.18922 0.93088 0.93819 0.92235 0.99274 1.21524 0.97709 0.93955 1.01199 1.21907 0.98988 0.98570 0.96871 1.22024 0.93728 0.86135 1.00074 1.47780 1.03040 1.09932 1.73770 1.15918 0.83187 0.82360 0.78295 1.90765 1.61711 1.38065 1.57700 1.42245 1.03419 1.09018 1.75470 1.19452 0.85346 0.92496 0.97335 1.23132 0.93227 1.01696 0.98743 1.19082 0.93518 0.95641 0.98235 1.21227 0.94179 0.98110 1.01172 1.21594 0.94545 0.98786 0.94323 1.21515 1.02342 0.91317 0.95819 1.21078 0.88206 1.02151 0.98881 1.20720 0.97568 0.90465 1.01967 1.73508 0.95352 1.26804 1.09266 1.72689 1.06155 1.19738 1.13507 1.21784 0.97083 0.80941 0.98226 0.93072 0.92814 0.92153 0.93043 0.87522 0.88500 0.89227 0.73357 0.81542 0.84291 0.81219 0.80310 0.81910 0.94012 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.69 11.38 21.45 0.24 -53.45 16 2 C 0.01 0.69 5.30 84.66 0.45 1.14 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -28.59 8.57 25.60 0.22 -28.37 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.04 1.88 2.25 -11.46 -0.03 1.85 16 10 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 11 C -0.11 -3.89 5.11 30.62 0.16 -3.74 16 12 C -0.13 -3.48 6.08 30.67 0.19 -3.30 16 13 C 0.10 2.77 6.43 86.36 0.56 3.32 16 14 N -0.61 -23.63 2.97 -836.91 -2.49 -26.12 16 15 C 0.70 28.51 8.16 179.05 1.46 29.97 16 16 O -0.60 -29.40 12.54 -3.97 -0.05 -29.45 16 17 N -0.65 -21.48 5.34 -322.04 -1.72 -23.20 16 18 C 0.28 9.84 7.62 132.48 1.01 10.85 16 19 C -0.13 -4.86 8.72 22.87 0.20 -4.66 16 20 C -0.06 -1.68 5.75 -21.28 -0.12 -1.80 16 21 C -0.13 -2.96 9.81 22.29 0.22 -2.74 16 22 C -0.07 -1.08 9.96 22.08 0.22 -0.86 16 23 C -0.09 -1.12 9.94 22.06 0.22 -0.90 16 24 C -0.08 -1.50 10.00 22.33 0.22 -1.28 16 25 C 0.02 0.68 6.69 40.39 0.27 0.95 16 26 N -0.20 -6.16 11.54 -51.95 -0.60 -6.76 16 27 N -0.26 -8.81 11.51 -55.12 -0.63 -9.44 16 28 C 0.14 6.79 5.38 86.36 0.46 7.25 16 29 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.10 1.97 5.57 -2.39 -0.01 1.96 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.42 11.05 6.28 -92.71 -0.58 10.47 16 37 H 0.17 6.92 5.28 -4.17 -0.02 6.90 16 38 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 39 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 41 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 42 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.08 4.71 5.14 -2.39 -0.01 4.70 16 Total: -1.00 -73.45 349.44 2.95 -70.50 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.47 Total: 24.98 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 5.70 Total: 7.69 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -5.20 Total: -118.98 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.05 Total: -29.45 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -73.45 2.95 -70.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888620777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.860 kcal (2) G-P(sol) polarization free energy of solvation -73.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds