Wall clock time and date at job start Tue Mar 31 2020 14:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35946 * 117.00002 * 2 1 4 4 C 1.38206 * 120.01040 * 0.02673 * 3 2 1 5 5 C 1.39737 * 119.85932 * 179.97438 * 4 3 2 6 6 C 1.47392 * 120.06696 * 179.97438 * 5 4 3 7 7 N 1.29807 * 120.00149 * 179.97438 * 6 5 4 8 8 N 1.40096 * 119.99618 * 180.02562 * 7 6 5 9 9 C 1.46503 * 119.99471 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46919 * 179.97438 * 9 8 7 11 11 C 1.38229 * 120.00225 * 269.73125 * 10 9 8 12 12 C 1.38236 * 119.99912 * 179.76489 * 11 10 9 13 13 C 1.38244 * 119.99974 * 0.50768 * 12 11 10 14 14 C 1.38236 * 119.99649 * 359.74517 * 13 12 11 15 15 C 1.38238 * 119.99272 * 90.00459 * 10 9 8 16 16 C 1.39817 * 119.87016 * 359.97438 * 5 4 3 17 17 C 1.37777 * 120.01359 * 359.74652 * 16 5 4 18 18 C 1.38946 * 120.14595 * 0.50940 * 17 16 5 19 19 O 1.35715 * 119.93901 * 179.76247 * 18 17 16 20 20 C 1.34796 * 116.99629 * 5.61845 * 19 18 17 21 21 H 1.07997 * 120.00329 * 354.93523 * 20 19 18 22 22 C 1.38600 * 120.00062 * 174.93412 * 20 19 18 23 23 N 1.31597 * 119.99735 * 0.27451 * 22 20 19 24 24 Si 1.86792 * 120.00286 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47286 * 90.00169 * 24 22 20 26 26 H 1.48501 * 109.47271 * 210.00453 * 24 22 20 27 27 H 1.48498 * 109.47125 * 329.99929 * 24 22 20 28 28 H 1.09000 * 109.47049 * 299.99788 * 1 2 3 29 29 H 1.09000 * 109.47405 * 59.99842 * 1 2 3 30 30 H 1.09002 * 109.47212 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.06983 * 359.94990 * 4 3 2 32 32 H 1.08000 * 119.99504 * 359.97438 * 6 5 4 33 33 H 0.96994 * 120.00839 * 359.97438 * 8 7 6 34 34 H 1.08993 * 109.47858 * 300.00078 * 9 8 7 35 35 H 1.09000 * 109.47005 * 60.00460 * 9 8 7 36 36 H 1.08003 * 120.00228 * 359.97438 * 11 10 9 37 37 H 1.07994 * 120.00399 * 180.23093 * 12 11 10 38 38 H 1.08003 * 120.00110 * 179.72149 * 13 12 11 39 39 H 1.08003 * 119.99942 * 179.97438 * 14 13 12 40 40 H 1.07992 * 120.00540 * 0.02562 * 15 10 9 41 41 H 1.08004 * 119.98897 * 180.02562 * 16 5 4 42 42 H 1.07998 * 119.92842 * 180.25775 * 17 16 5 43 43 H 0.97001 * 120.00445 * 359.72823 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2936 2.3705 0.0006 5 6 1.9313 3.6139 0.0011 6 6 1.1333 4.8531 0.0011 7 7 1.7269 6.0074 0.0021 8 7 0.9683 7.1852 0.0027 9 6 1.6384 8.4880 0.0044 10 6 0.6045 9.5846 0.0041 11 6 0.1358 10.0922 -1.1931 12 6 -0.8160 11.0947 -1.1934 13 6 -1.2914 11.5968 0.0037 14 6 -0.8188 11.0927 1.2009 15 6 0.1292 10.0866 1.2012 16 6 3.3279 3.6802 0.0016 17 6 4.0729 2.5213 0.0069 18 6 3.4395 1.2846 0.0010 19 8 4.1775 0.1456 0.0013 20 6 5.5128 0.2818 0.1251 21 1 5.9566 1.2663 0.1358 22 6 6.3164 -0.8418 0.2385 23 7 5.7763 -2.0416 0.2200 24 14 8.1670 -0.6532 0.4093 25 1 8.5242 -0.5578 1.8475 26 1 8.8422 -1.8315 -0.1914 27 1 8.6057 0.5797 -0.2926 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2150 2.3155 0.0002 32 1 0.0545 4.8006 0.0003 33 1 -0.0005 7.1382 0.0020 34 1 2.2609 8.5754 0.8948 35 1 2.2620 8.5769 -0.8851 36 1 0.5107 9.7034 -2.1284 37 1 -1.1850 11.4888 -2.1287 38 1 -2.0318 12.3831 0.0035 39 1 -1.1899 11.4852 2.1362 40 1 0.4990 9.6933 2.1365 41 1 3.8228 4.6402 0.0025 42 1 5.1516 2.5741 0.0115 43 1 4.8153 -2.1397 0.1309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916343845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:54 Heat of formation + Delta-G solvation = 30.134786 kcal Electronic energy + Delta-G solvation = -25168.322917 eV Core-core repulsion = 21373.680845 eV Total energy + Delta-G solvation = -3794.642072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.68683 -39.63491 -37.65234 -37.11462 -35.82475 -33.54368 -32.28858 -31.28244 -30.58735 -29.60551 -28.60031 -26.73621 -25.35187 -24.73250 -22.94873 -22.65339 -21.64734 -21.45784 -20.11475 -18.44185 -17.69652 -17.15361 -16.83099 -15.82559 -15.71485 -15.62552 -15.26598 -15.22582 -14.99795 -14.11482 -14.04856 -13.87858 -13.77935 -13.63919 -13.61318 -13.51116 -13.27713 -12.84498 -12.45799 -12.15224 -11.54293 -11.48232 -11.45939 -11.33547 -11.25223 -10.84330 -10.78777 -10.46808 -10.35744 -10.29904 -9.85719 -9.45961 -9.31086 -9.22946 -8.83069 -8.18972 -7.80500 -6.80302 -6.75166 -4.02371 0.85905 1.01417 1.57628 2.17589 2.98880 3.05776 3.25274 3.33164 3.44812 3.55554 3.93595 4.10178 4.38013 4.49328 4.57463 4.62681 4.74759 4.93865 5.05206 5.10739 5.14112 5.16877 5.30031 5.39852 5.40985 5.50010 5.53215 5.64325 5.68207 5.72502 5.83118 5.86744 6.04541 6.11848 6.16182 6.25436 6.29548 6.37737 6.53393 6.59597 6.92392 7.11119 7.18105 7.32253 7.43116 7.57080 8.04325 8.39481 8.64656 8.89327 9.58455 10.65069 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.002033 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.568921 B =13766.129402 C =15024.926088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.307 6.307 3 C 0.050 3.950 4 C -0.142 4.142 5 C -0.116 4.116 6 C 0.097 3.903 7 N -0.248 5.248 8 N -0.670 5.670 9 C 0.203 3.797 10 C -0.103 4.103 11 C -0.099 4.099 12 C -0.124 4.124 13 C -0.115 4.115 14 C -0.124 4.124 15 C -0.099 4.099 16 C -0.056 4.056 17 C -0.216 4.216 18 C 0.147 3.853 19 O -0.182 6.182 20 C -0.468 4.468 21 H 0.087 0.913 22 C 0.010 3.990 23 N -0.874 5.874 24 Si 1.099 2.901 25 H -0.280 1.280 26 H -0.275 1.275 27 H -0.281 1.281 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.371 0.629 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.137 0.863 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.629 21.952 -0.321 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.221 6.221 3 C 0.005 3.995 4 C -0.163 4.163 5 C -0.120 4.120 6 C -0.113 4.113 7 N -0.055 5.055 8 N -0.408 5.408 9 C 0.079 3.921 10 C -0.105 4.105 11 C -0.118 4.118 12 C -0.142 4.142 13 C -0.134 4.134 14 C -0.142 4.142 15 C -0.118 4.118 16 C -0.077 4.077 17 C -0.236 4.236 18 C 0.091 3.909 19 O -0.085 6.085 20 C -0.544 4.544 21 H 0.105 0.895 22 C -0.196 4.196 23 N -0.505 5.505 24 Si 0.923 3.077 25 H -0.206 1.206 26 H -0.200 1.200 27 H -0.207 1.207 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.114 0.886 33 H 0.207 0.793 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.154 0.846 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.155 21.259 -0.184 24.008 hybrid contribution -3.094 1.012 -0.158 3.259 sum -14.249 22.270 -0.342 26.441 Atomic orbital electron populations 1.22893 0.80257 1.02951 1.00374 1.86194 1.19550 1.26448 1.89929 1.17980 0.89293 0.84409 1.07788 1.20660 0.98365 0.90715 1.06570 1.17546 0.92392 0.89291 1.12792 1.23802 0.96327 0.90379 1.00779 1.74207 1.25340 0.93204 1.12747 1.47863 1.05041 1.00511 1.87431 1.19720 0.92202 0.78388 1.01786 1.19966 0.98961 0.98050 0.93487 1.21158 0.96569 0.96339 0.97748 1.21187 0.97518 0.97263 0.98243 1.21225 0.99726 0.99778 0.92635 1.21188 0.97567 0.97212 0.98242 1.21161 0.96570 0.96325 0.97758 1.20878 0.92410 0.97544 0.96834 1.20899 1.00820 0.90677 1.11201 1.18669 0.87911 0.87405 0.96915 1.83710 1.20199 1.26924 1.77655 1.22342 0.78858 0.97393 1.55759 0.89523 1.26590 1.07286 0.90702 0.95047 1.70526 1.15866 1.22934 1.41166 0.83050 0.71074 0.76225 0.77355 1.20640 1.20040 1.20679 0.93475 0.93500 0.89084 0.86079 0.88553 0.79250 0.91917 0.91931 0.85788 0.85909 0.86031 0.85907 0.85785 0.86151 0.84559 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.44 16 2 O -0.31 -6.47 10.28 -34.19 -0.35 -6.83 16 3 C 0.05 1.09 6.70 -39.11 -0.26 0.83 16 4 C -0.14 -2.54 8.77 -39.03 -0.34 -2.89 16 5 C -0.12 -2.08 5.87 -105.02 -0.62 -2.70 16 6 C 0.10 1.49 10.74 -14.68 -0.16 1.33 16 7 N -0.25 -3.82 10.60 32.15 0.34 -3.48 16 8 N -0.67 -8.32 6.63 -11.65 -0.08 -8.40 16 9 C 0.20 2.13 6.80 -5.19 -0.04 2.09 16 10 C -0.10 -0.93 5.25 -104.62 -0.55 -1.48 16 11 C -0.10 -0.82 9.70 -39.59 -0.38 -1.21 16 12 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 13 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 14 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 15 C -0.10 -0.82 9.70 -39.58 -0.38 -1.21 16 16 C -0.06 -1.08 9.57 -39.16 -0.37 -1.46 16 17 C -0.22 -4.79 9.14 -39.49 -0.36 -5.15 16 18 C 0.15 3.61 6.67 -38.84 -0.26 3.35 16 19 O -0.18 -5.22 8.93 -14.36 -0.13 -5.34 16 20 C -0.47 -13.15 9.48 30.87 0.29 -12.85 16 21 H 0.09 2.27 5.19 -52.49 -0.27 2.00 16 22 C 0.01 0.28 5.49 -17.52 -0.10 0.19 16 23 N -0.87 -26.17 13.70 55.48 0.76 -25.41 16 24 Si 1.10 23.64 29.91 -169.99 -5.09 18.56 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 27 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 28 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 29 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.12 1.76 6.29 -52.49 -0.33 1.43 16 32 H 0.10 1.23 8.02 -52.49 -0.42 0.81 16 33 H 0.37 4.16 8.42 -182.61 -1.54 2.62 16 34 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 39 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.12 2.16 7.54 -52.48 -0.40 1.76 16 42 H 0.14 3.01 5.62 -52.49 -0.29 2.71 16 43 H 0.29 8.85 7.97 -40.82 -0.33 8.52 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -32.55 374.17 -9.18 -41.72 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.54 Total: 7.04 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -3.73 Total: -23.51 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 1.02 Total: -37.28 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.48 Total: -12.17 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.09 Total: 18.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.55 -9.18 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916343845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.859 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds