Wall clock time and date at job start Tue Mar 31 2020 14:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35946 * 117.00002 * 2 1 4 4 C 1.38206 * 120.01040 * 0.02673 * 3 2 1 5 5 C 1.39737 * 119.85932 * 179.97438 * 4 3 2 6 6 C 1.47392 * 120.06696 * 179.97438 * 5 4 3 7 7 N 1.29807 * 120.00149 * 179.97438 * 6 5 4 8 8 N 1.40096 * 119.99618 * 180.02562 * 7 6 5 9 9 C 1.46503 * 119.99471 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46919 * 179.97438 * 9 8 7 11 11 C 1.38229 * 120.00225 * 269.73125 * 10 9 8 12 12 C 1.38236 * 119.99912 * 179.76489 * 11 10 9 13 13 C 1.38244 * 119.99974 * 0.50768 * 12 11 10 14 14 C 1.38236 * 119.99649 * 359.74517 * 13 12 11 15 15 C 1.38238 * 119.99272 * 90.00459 * 10 9 8 16 16 C 1.39817 * 119.87016 * 359.97438 * 5 4 3 17 17 C 1.37777 * 120.01359 * 359.74652 * 16 5 4 18 18 C 1.38946 * 120.14595 * 0.50940 * 17 16 5 19 19 O 1.35715 * 119.93901 * 179.76247 * 18 17 16 20 20 C 1.34796 * 116.99629 * 5.61845 * 19 18 17 21 21 H 1.07997 * 120.00329 * 354.93523 * 20 19 18 22 22 C 1.38600 * 120.00062 * 174.93412 * 20 19 18 23 23 N 1.31597 * 119.99735 * 0.27451 * 22 20 19 24 24 Si 1.86792 * 120.00286 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47286 * 90.00169 * 24 22 20 26 26 H 1.48501 * 109.47271 * 210.00453 * 24 22 20 27 27 H 1.48498 * 109.47125 * 329.99929 * 24 22 20 28 28 H 1.09000 * 109.47049 * 299.99788 * 1 2 3 29 29 H 1.09000 * 109.47405 * 59.99842 * 1 2 3 30 30 H 1.09002 * 109.47212 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.06983 * 359.94990 * 4 3 2 32 32 H 1.08000 * 119.99504 * 359.97438 * 6 5 4 33 33 H 0.96994 * 120.00839 * 359.97438 * 8 7 6 34 34 H 1.08993 * 109.47858 * 300.00078 * 9 8 7 35 35 H 1.09000 * 109.47005 * 60.00460 * 9 8 7 36 36 H 1.08003 * 120.00228 * 359.97438 * 11 10 9 37 37 H 1.07994 * 120.00399 * 180.23093 * 12 11 10 38 38 H 1.08003 * 120.00110 * 179.72149 * 13 12 11 39 39 H 1.08003 * 119.99942 * 179.97438 * 14 13 12 40 40 H 1.07992 * 120.00540 * 0.02562 * 15 10 9 41 41 H 1.08004 * 119.98897 * 180.02562 * 16 5 4 42 42 H 1.07998 * 119.92842 * 180.25775 * 17 16 5 43 43 H 0.97001 * 120.00445 * 359.72823 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2936 2.3705 0.0006 5 6 1.9313 3.6139 0.0011 6 6 1.1333 4.8531 0.0011 7 7 1.7269 6.0074 0.0021 8 7 0.9683 7.1852 0.0027 9 6 1.6384 8.4880 0.0044 10 6 0.6045 9.5846 0.0041 11 6 0.1358 10.0922 -1.1931 12 6 -0.8160 11.0947 -1.1934 13 6 -1.2914 11.5968 0.0037 14 6 -0.8188 11.0927 1.2009 15 6 0.1292 10.0866 1.2012 16 6 3.3279 3.6802 0.0016 17 6 4.0729 2.5213 0.0069 18 6 3.4395 1.2846 0.0010 19 8 4.1775 0.1456 0.0013 20 6 5.5128 0.2818 0.1251 21 1 5.9566 1.2663 0.1358 22 6 6.3164 -0.8418 0.2385 23 7 5.7763 -2.0416 0.2200 24 14 8.1670 -0.6532 0.4093 25 1 8.5242 -0.5578 1.8475 26 1 8.8422 -1.8315 -0.1914 27 1 8.6057 0.5797 -0.2926 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2150 2.3155 0.0002 32 1 0.0545 4.8006 0.0003 33 1 -0.0005 7.1382 0.0020 34 1 2.2609 8.5754 0.8948 35 1 2.2620 8.5769 -0.8851 36 1 0.5107 9.7034 -2.1284 37 1 -1.1850 11.4888 -2.1287 38 1 -2.0318 12.3831 0.0035 39 1 -1.1899 11.4852 2.1362 40 1 0.4990 9.6933 2.1365 41 1 3.8228 4.6402 0.0025 42 1 5.1516 2.5741 0.0115 43 1 4.8153 -2.1397 0.1309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916343845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:53 Heat of formation + Delta-G solvation = 10.649045 kcal Electronic energy + Delta-G solvation = -25169.167882 eV Core-core repulsion = 21373.680845 eV Total energy + Delta-G solvation = -3795.487037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31080 -40.26443 -39.36582 -38.46928 -37.17087 -34.64980 -34.11632 -31.83292 -31.77629 -31.16168 -29.86588 -27.97228 -26.99700 -26.05585 -24.08218 -23.50677 -23.19845 -22.23276 -21.50162 -20.28260 -19.18018 -18.36256 -17.75029 -17.44692 -16.82250 -16.69468 -16.55980 -16.28166 -15.82513 -15.75827 -15.68053 -15.36528 -15.32971 -15.01448 -14.63680 -14.27399 -14.06477 -13.84922 -13.48593 -13.44647 -13.06954 -12.99888 -12.71987 -12.41028 -12.34273 -12.13541 -12.01143 -11.96673 -11.89754 -11.72916 -11.44135 -10.96397 -10.75006 -9.87373 -9.83000 -9.73128 -9.18929 -8.91489 -8.30699 -6.16835 0.08317 0.25253 0.45371 0.53457 1.50653 1.57946 1.72994 1.79965 2.01520 2.37562 2.53480 2.89794 2.90477 3.14147 3.28309 3.67666 3.89191 3.92227 3.96558 4.11738 4.25861 4.28215 4.30959 4.39161 4.40516 4.44551 4.53236 4.56781 4.64727 4.70771 4.73202 4.77159 4.94944 5.01718 5.06381 5.12253 5.22267 5.49217 5.51859 5.56561 5.58077 5.63417 5.70591 5.90174 6.04697 6.21866 6.22869 6.59146 6.89893 7.51988 7.66477 8.53202 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.002033 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.568921 B =13766.129402 C =15024.926088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.046 3.954 4 C -0.131 4.131 5 C -0.082 4.082 6 C 0.082 3.918 7 N -0.254 5.254 8 N -0.658 5.658 9 C 0.202 3.798 10 C -0.114 4.114 11 C -0.109 4.109 12 C -0.129 4.129 13 C -0.117 4.117 14 C -0.129 4.129 15 C -0.109 4.109 16 C -0.071 4.071 17 C -0.212 4.212 18 C 0.095 3.905 19 O -0.238 6.238 20 C -0.485 4.485 21 H 0.094 0.906 22 C -0.046 4.046 23 N -0.915 5.915 24 Si 1.148 2.852 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.258 1.258 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.167 0.833 32 H 0.134 0.866 33 H 0.381 0.619 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.127 0.873 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.304 26.091 -0.257 30.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.260 6.260 3 C 0.001 3.999 4 C -0.151 4.151 5 C -0.085 4.085 6 C -0.128 4.128 7 N -0.061 5.061 8 N -0.397 5.397 9 C 0.079 3.921 10 C -0.115 4.115 11 C -0.128 4.128 12 C -0.147 4.147 13 C -0.135 4.135 14 C -0.147 4.147 15 C -0.128 4.128 16 C -0.091 4.091 17 C -0.231 4.231 18 C 0.044 3.956 19 O -0.145 6.145 20 C -0.561 4.561 21 H 0.111 0.889 22 C -0.242 4.242 23 N -0.550 5.550 24 Si 0.964 3.036 25 H -0.189 1.189 26 H -0.198 1.198 27 H -0.182 1.182 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.184 0.816 32 H 0.151 0.849 33 H 0.219 0.781 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.892 25.479 -0.122 29.020 hybrid contribution -2.720 0.289 -0.192 2.742 sum -16.612 25.768 -0.314 30.661 Atomic orbital electron populations 1.23312 0.76804 1.05061 1.02379 1.86162 1.23260 1.26686 1.89896 1.18286 0.88677 0.85981 1.06986 1.21069 1.00372 0.89116 1.04586 1.17967 0.92020 0.90884 1.07599 1.23666 0.97568 0.88989 1.02578 1.74074 1.27242 0.94320 1.10502 1.47991 1.05599 1.00040 1.86080 1.19802 0.92742 0.77971 1.01585 1.19831 0.99347 0.98147 0.94169 1.21288 0.97014 0.96861 0.97641 1.21464 0.97054 0.96820 0.99370 1.21567 0.99710 0.99892 0.92307 1.21464 0.97108 0.96770 0.99370 1.21289 0.97017 0.96857 0.97649 1.21047 0.93374 0.97005 0.97687 1.20992 1.00754 0.91090 1.10306 1.19348 0.89548 0.87440 0.99269 1.83702 1.20296 1.28773 1.81690 1.22669 0.79642 0.97855 1.55960 0.88907 1.28407 1.11687 0.90067 0.94046 1.70671 1.13982 1.24121 1.46203 0.82542 0.65582 0.77091 0.78422 1.18949 1.19847 1.18202 0.91318 0.91256 0.87309 0.81558 0.84938 0.78128 0.92099 0.92099 0.85497 0.84089 0.83806 0.84094 0.85509 0.84611 0.85549 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.81 113.37 1.11 1.61 16 2 O -0.34 -14.73 10.28 -78.96 -0.81 -15.55 16 3 C 0.05 1.99 6.70 22.57 0.15 2.14 16 4 C -0.13 -4.32 8.77 22.62 0.20 -4.12 16 5 C -0.08 -2.68 5.87 -20.12 -0.12 -2.80 16 6 C 0.08 2.16 10.74 87.40 0.94 3.10 16 7 N -0.25 -6.90 10.60 -52.21 -0.55 -7.46 16 8 N -0.66 -14.10 6.63 -190.78 -1.26 -15.37 16 9 C 0.20 3.76 6.80 85.63 0.58 4.34 16 10 C -0.11 -1.77 5.25 -19.86 -0.10 -1.87 16 11 C -0.11 -1.54 9.70 22.27 0.22 -1.32 16 12 C -0.13 -1.48 10.05 22.27 0.22 -1.26 16 13 C -0.12 -1.22 10.05 22.27 0.22 -1.00 16 14 C -0.13 -1.49 10.05 22.27 0.22 -1.26 16 15 C -0.11 -1.54 9.70 22.27 0.22 -1.33 16 16 C -0.07 -2.66 9.57 22.54 0.22 -2.44 16 17 C -0.21 -9.67 9.14 22.33 0.20 -9.46 16 18 C 0.10 4.92 6.67 22.75 0.15 5.07 16 19 O -0.24 -14.67 8.93 -8.03 -0.07 -14.74 16 20 C -0.49 -29.15 9.48 67.91 0.64 -28.50 16 21 H 0.09 5.17 5.19 -2.91 -0.02 5.15 16 22 C -0.05 -2.70 5.49 84.81 0.47 -2.23 16 23 N -0.92 -58.82 13.70 21.61 0.30 -58.53 16 24 Si 1.15 49.35 29.91 68.60 2.05 51.41 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 28 H 0.07 1.51 7.66 -2.39 -0.02 1.50 16 29 H 0.07 1.52 7.66 -2.39 -0.02 1.50 16 30 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.17 3.96 6.29 -2.91 -0.02 3.95 16 32 H 0.13 2.59 8.02 -2.91 -0.02 2.57 16 33 H 0.38 7.04 8.42 -213.33 -1.80 5.24 16 34 H 0.06 1.17 8.09 -2.39 -0.02 1.15 16 35 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 36 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.14 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 41 H 0.14 4.66 7.54 -2.91 -0.02 4.63 16 42 H 0.13 5.87 5.62 -2.91 -0.02 5.86 16 43 H 0.26 17.63 7.97 -92.71 -0.74 16.89 16 Total: -1.00 -77.84 374.17 4.47 -73.37 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -0.72 Total: 28.22 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 5.55 Total: -41.35 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -1.52 Total: -81.35 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.88 Total: -30.29 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.05 Total: 51.41 kcal Total: -77.84 4.47 -73.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916343845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.017 kcal (2) G-P(sol) polarization free energy of solvation -77.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds