Wall clock time and date at job start Tue Mar 31 2020 14:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 120.00200 * 2 1 4 4 C 1.50701 * 109.46791 * 96.39563 * 3 2 1 5 5 C 1.38165 * 120.03261 * 99.75425 * 4 3 2 6 6 C 1.38242 * 120.05723 * 179.97438 * 5 4 3 7 7 C 1.38283 * 120.11352 * 359.97438 * 6 5 4 8 8 C 1.38127 * 120.05607 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02749 * 279.71019 * 4 3 2 10 10 O 1.35905 * 120.05579 * 0.04365 * 9 4 3 11 11 C 1.34783 * 119.99454 * 180.02562 * 2 1 3 12 12 O 1.21589 * 119.99445 * 184.83152 * 11 2 1 13 13 N 1.34771 * 120.00409 * 4.82636 * 11 2 1 14 14 C 1.39236 * 120.00028 * 173.81409 * 13 11 2 15 15 C 1.39487 * 119.83323 * 324.77640 * 14 13 11 16 16 C 1.36373 * 120.16591 * 179.76517 * 15 14 13 17 17 C 1.40865 * 119.83091 * 0.53200 * 16 15 14 18 18 C 1.41155 * 120.16352 * 179.69953 * 17 16 15 19 19 H 1.07998 * 120.00360 * 164.33162 * 18 17 16 20 20 C 1.39893 * 120.00059 * 344.32617 * 18 17 16 21 21 N 1.30880 * 119.99846 * 326.00931 * 20 18 17 22 22 Si 1.86804 * 119.99919 * 146.00997 * 20 18 17 23 23 H 1.48500 * 109.47012 * 94.99725 * 22 20 18 24 24 H 1.48500 * 109.46860 * 214.99024 * 22 20 18 25 25 H 1.48497 * 109.46905 * 334.99404 * 22 20 18 26 26 C 1.40867 * 119.67409 * 359.72389 * 17 16 15 27 27 C 1.36374 * 119.82507 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.46960 * 89.99228 * 1 2 3 29 29 H 1.08994 * 109.47405 * 209.99777 * 1 2 3 30 30 H 1.08997 * 109.46299 * 329.99868 * 1 2 3 31 31 H 1.08992 * 109.47057 * 336.39483 * 3 2 1 32 32 H 1.08999 * 109.47155 * 216.39181 * 3 2 1 33 33 H 1.08002 * 119.96893 * 359.97438 * 5 4 3 34 34 H 1.08005 * 119.94366 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.97421 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.02548 * 179.72497 * 8 7 6 37 37 H 0.96697 * 114.00284 * 274.72126 * 10 9 4 38 38 H 0.97000 * 119.99879 * 353.81455 * 13 11 2 39 39 H 1.08000 * 119.91487 * 0.02562 * 15 14 13 40 40 H 1.08003 * 120.08258 * 180.25398 * 16 15 14 41 41 H 0.97011 * 119.99681 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.08780 * 179.97438 * 26 17 16 43 43 H 1.08001 * 119.91219 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5858 1.6245 1.4120 5 6 3.8675 1.3712 1.8615 6 6 4.2243 1.6979 3.1565 7 6 3.3001 2.2793 4.0051 8 6 2.0178 2.5355 3.5603 9 6 1.6569 2.2075 2.2613 10 8 0.3955 2.4577 1.8217 11 6 2.1389 -1.1673 -0.0005 12 8 3.3515 -1.1692 0.0882 13 7 1.4686 -2.3323 -0.0992 14 6 2.1681 -3.5291 -0.2295 15 6 3.3567 -3.5623 -0.9588 16 6 4.0498 -4.7298 -1.0867 17 6 3.5568 -5.9065 -0.4896 18 6 4.2652 -7.1201 -0.6229 19 1 4.0386 -7.9520 0.0274 20 6 5.2609 -7.2453 -1.5976 21 7 5.1362 -6.6261 -2.7439 22 14 6.7686 -8.2963 -1.2629 23 1 6.5544 -9.6587 -1.8135 24 1 7.9545 -7.6812 -1.9113 25 1 6.9953 -8.3843 0.2021 26 6 2.3529 -5.8662 0.2408 27 6 1.6735 -4.6903 0.3644 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.5638 2.0541 -0.4115 32 1 3.0957 1.1697 -0.6097 33 1 4.5912 0.9176 1.2005 34 1 5.2266 1.4987 3.5061 35 1 3.5814 2.5339 5.0162 36 1 1.2951 2.9855 4.2248 37 1 0.3006 3.3009 1.3580 38 1 0.4988 -2.3371 -0.0795 39 1 3.7312 -2.6602 -1.4197 40 1 4.9721 -4.7530 -1.6482 41 1 5.8268 -6.7127 -3.4196 42 1 1.9686 -6.7645 0.7010 43 1 0.7506 -4.6577 0.9244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916674149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:55 Heat of formation + Delta-G solvation = -11.683531 kcal Electronic energy + Delta-G solvation = -26845.744288 eV Core-core repulsion = 23049.288837 eV Total energy + Delta-G solvation = -3796.455450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39605 -39.49111 -37.42010 -36.77640 -35.31776 -34.41678 -33.06486 -31.63719 -29.93198 -29.40175 -28.90871 -27.17656 -25.94759 -24.41105 -22.64140 -21.90719 -21.24135 -20.72277 -19.12718 -18.52319 -17.75594 -17.28156 -16.63513 -16.19224 -15.86193 -15.69230 -15.22486 -14.85046 -14.72386 -13.96029 -13.93865 -13.75483 -13.33292 -13.07248 -12.80191 -12.66497 -12.56363 -12.36126 -12.24175 -12.01902 -11.92587 -11.77089 -11.36708 -11.22102 -11.06632 -11.03571 -10.61191 -10.55755 -10.01415 -9.63310 -9.47785 -9.03277 -8.85858 -8.81765 -8.70428 -8.43784 -7.44515 -7.09243 -6.79110 -4.18567 1.11540 1.26631 2.73391 3.03235 3.08367 3.11054 3.16779 3.24985 3.64109 3.79690 3.92849 4.00620 4.48564 4.57202 4.73059 4.78507 4.93665 5.14861 5.21008 5.30870 5.43854 5.55689 5.61554 5.73090 5.78953 5.87813 5.94444 6.23354 6.25138 6.39835 6.44817 6.49460 6.59231 6.74679 6.90363 6.97575 7.05973 7.17350 7.36388 7.38911 7.45651 7.66541 7.91358 8.07990 8.12001 8.30410 8.56696 8.65567 8.91375 8.99975 9.23458 10.05452 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.002784 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.004393 B =10053.383032 C =10713.014951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.631 5.631 3 C 0.185 3.815 4 C -0.131 4.131 5 C -0.069 4.069 6 C -0.132 4.132 7 C -0.105 4.105 8 C -0.152 4.152 9 C 0.114 3.886 10 O -0.495 6.495 11 C 0.696 3.304 12 O -0.575 6.575 13 N -0.665 5.665 14 C 0.001 3.999 15 C -0.075 4.075 16 C -0.176 4.176 17 C 0.107 3.893 18 C -0.464 4.464 19 H 0.081 0.919 20 C 0.088 3.912 21 N -0.764 5.764 22 Si 0.896 3.104 23 H -0.270 1.270 24 H -0.274 1.274 25 H -0.257 1.257 26 C -0.225 4.225 27 C -0.098 4.098 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.384 0.616 38 H 0.389 0.611 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.283 0.717 42 H 0.094 0.906 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.843 18.710 5.857 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.369 5.369 3 C 0.062 3.938 4 C -0.133 4.133 5 C -0.088 4.088 6 C -0.150 4.150 7 C -0.123 4.123 8 C -0.171 4.171 9 C 0.069 3.931 10 O -0.305 6.305 11 C 0.398 3.602 12 O -0.451 6.451 13 N -0.312 5.312 14 C -0.092 4.092 15 C -0.095 4.095 16 C -0.195 4.195 17 C 0.104 3.896 18 C -0.491 4.491 19 H 0.099 0.901 20 C -0.134 4.134 21 N -0.387 5.387 22 Si 0.719 3.281 23 H -0.195 1.195 24 H -0.199 1.199 25 H -0.181 1.181 26 C -0.245 4.245 27 C -0.119 4.119 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.240 0.760 38 H 0.223 0.777 39 H 0.116 0.884 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.009 18.198 5.879 20.046 hybrid contribution 0.128 -0.043 -0.004 0.135 sum -5.881 18.155 5.875 19.968 Atomic orbital electron populations 1.21801 0.80120 1.03618 1.01107 1.46969 1.06039 1.04383 1.79467 1.19926 0.97301 0.84590 0.92029 1.20691 0.93827 1.01039 0.97787 1.21181 0.95801 0.95830 0.95976 1.21230 1.00014 0.99708 0.94085 1.21032 0.93020 0.98660 0.99584 1.21293 0.96821 1.03000 0.95973 1.18277 0.83678 0.98850 0.92253 1.84829 1.25662 1.42810 1.77174 1.15949 0.85524 0.80265 0.78425 1.90883 1.11710 1.85702 1.56840 1.42228 1.08550 1.04403 1.76019 1.16878 0.99078 0.83679 1.09530 1.20317 0.94628 0.97310 0.97230 1.20787 1.01174 0.91509 1.06076 1.17571 0.89662 0.92913 0.89448 1.19490 1.15697 0.99194 1.14742 0.90142 1.25965 0.99176 0.94961 0.93334 1.69978 1.31799 1.34142 1.02790 0.86517 0.80977 0.80053 0.80568 1.19507 1.19869 1.18088 1.20383 0.97978 0.96009 1.10133 1.19985 0.99246 0.92937 0.99705 0.93239 0.92074 0.89568 0.90127 0.89541 0.84801 0.85807 0.85894 0.85760 0.76016 0.77676 0.88373 0.87099 0.90615 0.88825 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.11 59.85 0.61 1.44 16 2 N -0.63 -9.10 2.88 -188.74 -0.54 -9.64 16 3 C 0.19 2.27 5.11 -5.19 -0.03 2.25 16 4 C -0.13 -1.66 5.40 -104.47 -0.56 -2.22 16 5 C -0.07 -0.94 9.28 -39.61 -0.37 -1.31 16 6 C -0.13 -1.57 10.04 -39.56 -0.40 -1.96 16 7 C -0.10 -1.10 10.04 -39.61 -0.40 -1.50 16 8 C -0.15 -1.61 9.99 -39.43 -0.39 -2.00 16 9 C 0.11 1.27 6.68 -39.22 -0.26 1.01 16 10 O -0.49 -4.31 10.53 -19.44 -0.20 -4.51 16 11 C 0.70 13.42 7.90 -86.92 -0.69 12.73 16 12 O -0.57 -13.09 13.31 5.29 0.07 -13.02 16 13 N -0.67 -12.90 5.18 -14.10 -0.07 -12.97 16 14 C 0.00 0.02 6.25 -83.57 -0.52 -0.50 16 15 C -0.07 -1.93 8.57 -39.79 -0.34 -2.27 16 16 C -0.18 -4.82 8.78 -39.26 -0.34 -5.17 16 17 C 0.11 2.93 5.64 -106.80 -0.60 2.33 16 18 C -0.46 -12.50 8.95 -37.86 -0.34 -12.84 16 19 H 0.08 2.08 8.03 -52.49 -0.42 1.66 16 20 C 0.09 2.22 4.81 -17.34 -0.08 2.14 16 21 N -0.76 -19.86 11.47 55.54 0.64 -19.22 16 22 Si 0.90 18.67 29.67 -169.99 -5.04 13.63 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 26 C -0.22 -5.66 9.74 -39.26 -0.38 -6.04 16 27 C -0.10 -2.27 9.90 -39.79 -0.39 -2.67 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.67 6.48 -51.93 -0.34 0.33 16 30 H 0.09 0.82 5.73 -51.93 -0.30 0.52 16 31 H 0.08 0.71 7.73 -51.93 -0.40 0.31 16 32 H 0.09 1.16 7.56 -51.93 -0.39 0.77 16 33 H 0.13 1.97 7.84 -52.49 -0.41 1.56 16 34 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.38 1.50 9.06 45.56 0.41 1.92 16 38 H 0.39 6.20 6.60 -40.82 -0.27 5.93 16 39 H 0.10 2.54 6.56 -52.49 -0.34 2.20 16 40 H 0.11 3.12 6.15 -52.48 -0.32 2.80 16 41 H 0.28 6.61 8.30 -40.81 -0.34 6.27 16 42 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -33.00 360.00 -9.69 -42.68 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -4.46 Total: 14.20 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -5.50 Total: -16.59 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.02 Total: -41.83 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.13 Total: -17.53 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.04 Total: 13.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.00 -9.69 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916674149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.001 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds