Wall clock time and date at job start Tue Mar 31 2020 14:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 120.00200 * 2 1 4 4 C 1.50701 * 109.46791 * 96.39563 * 3 2 1 5 5 C 1.38165 * 120.03261 * 99.75425 * 4 3 2 6 6 C 1.38242 * 120.05723 * 179.97438 * 5 4 3 7 7 C 1.38283 * 120.11352 * 359.97438 * 6 5 4 8 8 C 1.38127 * 120.05607 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02749 * 279.71019 * 4 3 2 10 10 O 1.35905 * 120.05579 * 0.04365 * 9 4 3 11 11 C 1.34783 * 119.99454 * 180.02562 * 2 1 3 12 12 O 1.21589 * 119.99445 * 184.83152 * 11 2 1 13 13 N 1.34771 * 120.00409 * 4.82636 * 11 2 1 14 14 C 1.39236 * 120.00028 * 173.81409 * 13 11 2 15 15 C 1.39487 * 119.83323 * 324.77640 * 14 13 11 16 16 C 1.36373 * 120.16591 * 179.76517 * 15 14 13 17 17 C 1.40865 * 119.83091 * 0.53200 * 16 15 14 18 18 C 1.41155 * 120.16352 * 179.69953 * 17 16 15 19 19 H 1.07998 * 120.00360 * 164.33162 * 18 17 16 20 20 C 1.39893 * 120.00059 * 344.32617 * 18 17 16 21 21 N 1.30880 * 119.99846 * 326.00931 * 20 18 17 22 22 Si 1.86804 * 119.99919 * 146.00997 * 20 18 17 23 23 H 1.48500 * 109.47012 * 94.99725 * 22 20 18 24 24 H 1.48500 * 109.46860 * 214.99024 * 22 20 18 25 25 H 1.48497 * 109.46905 * 334.99404 * 22 20 18 26 26 C 1.40867 * 119.67409 * 359.72389 * 17 16 15 27 27 C 1.36374 * 119.82507 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.46960 * 89.99228 * 1 2 3 29 29 H 1.08994 * 109.47405 * 209.99777 * 1 2 3 30 30 H 1.08997 * 109.46299 * 329.99868 * 1 2 3 31 31 H 1.08992 * 109.47057 * 336.39483 * 3 2 1 32 32 H 1.08999 * 109.47155 * 216.39181 * 3 2 1 33 33 H 1.08002 * 119.96893 * 359.97438 * 5 4 3 34 34 H 1.08005 * 119.94366 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.97421 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.02548 * 179.72497 * 8 7 6 37 37 H 0.96697 * 114.00284 * 274.72126 * 10 9 4 38 38 H 0.97000 * 119.99879 * 353.81455 * 13 11 2 39 39 H 1.08000 * 119.91487 * 0.02562 * 15 14 13 40 40 H 1.08003 * 120.08258 * 180.25398 * 16 15 14 41 41 H 0.97011 * 119.99681 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.08780 * 179.97438 * 26 17 16 43 43 H 1.08001 * 119.91219 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5858 1.6245 1.4120 5 6 3.8675 1.3712 1.8615 6 6 4.2243 1.6979 3.1565 7 6 3.3001 2.2793 4.0051 8 6 2.0178 2.5355 3.5603 9 6 1.6569 2.2075 2.2613 10 8 0.3955 2.4577 1.8217 11 6 2.1389 -1.1673 -0.0005 12 8 3.3515 -1.1692 0.0882 13 7 1.4686 -2.3323 -0.0992 14 6 2.1681 -3.5291 -0.2295 15 6 3.3567 -3.5623 -0.9588 16 6 4.0498 -4.7298 -1.0867 17 6 3.5568 -5.9065 -0.4896 18 6 4.2652 -7.1201 -0.6229 19 1 4.0386 -7.9520 0.0274 20 6 5.2609 -7.2453 -1.5976 21 7 5.1362 -6.6261 -2.7439 22 14 6.7686 -8.2963 -1.2629 23 1 6.5544 -9.6587 -1.8135 24 1 7.9545 -7.6812 -1.9113 25 1 6.9953 -8.3843 0.2021 26 6 2.3529 -5.8662 0.2408 27 6 1.6735 -4.6903 0.3644 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.5638 2.0541 -0.4115 32 1 3.0957 1.1697 -0.6097 33 1 4.5912 0.9176 1.2005 34 1 5.2266 1.4987 3.5061 35 1 3.5814 2.5339 5.0162 36 1 1.2951 2.9855 4.2248 37 1 0.3006 3.3009 1.3580 38 1 0.4988 -2.3371 -0.0795 39 1 3.7312 -2.6602 -1.4197 40 1 4.9721 -4.7530 -1.6482 41 1 5.8268 -6.7127 -3.4196 42 1 1.9686 -6.7645 0.7010 43 1 0.7506 -4.6577 0.9244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916674149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:54 Heat of formation + Delta-G solvation = -32.283098 kcal Electronic energy + Delta-G solvation = -26846.637552 eV Core-core repulsion = 23049.288837 eV Total energy + Delta-G solvation = -3797.348715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63537 -40.63235 -39.20621 -37.52681 -36.66390 -36.15490 -34.81385 -32.69231 -31.38833 -30.90396 -30.61988 -28.11658 -27.38090 -26.00322 -23.51079 -23.24619 -23.07231 -22.22682 -20.64887 -19.47832 -19.26125 -18.95219 -18.04838 -17.25776 -17.19187 -16.78112 -16.61500 -16.04134 -15.94252 -15.74509 -15.27752 -14.96390 -14.64433 -14.51007 -14.23179 -13.98391 -13.82783 -13.78662 -13.50979 -13.30986 -13.12039 -13.07098 -12.93532 -12.77567 -12.62016 -12.34186 -12.23807 -11.84375 -11.51052 -11.37570 -11.15829 -10.83527 -10.67558 -9.85695 -9.69532 -9.49387 -9.44155 -8.99173 -8.67718 -6.19007 0.25490 0.38118 0.89534 1.16232 1.35895 1.45211 1.55861 1.82801 2.16882 2.22995 2.67757 2.74850 3.18758 3.28768 3.75450 3.84358 3.88583 4.12690 4.25781 4.31217 4.42813 4.47106 4.47712 4.57599 4.67354 4.77442 4.89193 4.95661 5.04220 5.08626 5.09579 5.17143 5.28973 5.41065 5.45344 5.52004 5.54994 5.61679 5.66025 5.80603 5.93929 6.07664 6.14257 6.18346 6.35194 6.66545 6.89653 6.90825 7.03606 7.07887 7.70607 8.18580 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.002784 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.004393 B =10053.383032 C =10713.014951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.621 5.621 3 C 0.182 3.818 4 C -0.148 4.148 5 C -0.096 4.096 6 C -0.148 4.148 7 C -0.102 4.102 8 C -0.156 4.156 9 C 0.124 3.876 10 O -0.495 6.495 11 C 0.688 3.312 12 O -0.618 6.618 13 N -0.660 5.660 14 C 0.011 3.989 15 C -0.086 4.086 16 C -0.201 4.201 17 C 0.077 3.923 18 C -0.499 4.499 19 H 0.082 0.918 20 C 0.047 3.953 21 N -0.797 5.797 22 Si 0.973 3.027 23 H -0.254 1.254 24 H -0.267 1.267 25 H -0.259 1.259 26 C -0.235 4.235 27 C -0.094 4.094 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.409 0.591 38 H 0.408 0.592 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.292 0.708 42 H 0.108 0.892 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.974 19.945 7.275 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.357 5.357 3 C 0.059 3.941 4 C -0.150 4.150 5 C -0.115 4.115 6 C -0.166 4.166 7 C -0.120 4.120 8 C -0.174 4.174 9 C 0.079 3.921 10 O -0.308 6.308 11 C 0.390 3.610 12 O -0.498 6.498 13 N -0.309 5.309 14 C -0.083 4.083 15 C -0.107 4.107 16 C -0.221 4.221 17 C 0.074 3.926 18 C -0.527 4.527 19 H 0.100 0.900 20 C -0.173 4.173 21 N -0.420 5.420 22 Si 0.792 3.208 23 H -0.178 1.178 24 H -0.191 1.191 25 H -0.183 1.183 26 C -0.255 4.255 27 C -0.114 4.114 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.149 0.851 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.268 0.732 38 H 0.246 0.754 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.218 19.497 7.282 22.376 hybrid contribution 0.649 -0.238 -0.434 0.816 sum -7.569 19.259 6.848 21.797 Atomic orbital electron populations 1.22074 0.77437 1.04754 1.02776 1.47030 1.07637 1.03329 1.77713 1.20119 0.97279 0.84518 0.92173 1.20708 0.93904 1.02222 0.98138 1.21144 0.96301 0.97327 0.96683 1.21404 1.01052 1.00351 0.93765 1.21359 0.92793 0.97397 1.00444 1.21631 0.97217 1.02499 0.96082 1.18252 0.83913 0.97803 0.92180 1.84754 1.23955 1.44678 1.77461 1.16226 0.85189 0.81348 0.78198 1.90866 1.13891 1.86501 1.58527 1.42037 1.09353 1.03319 1.76203 1.16933 0.98162 0.85487 1.07720 1.20335 0.95931 0.96318 0.98072 1.20697 1.01276 0.92565 1.07584 1.17903 0.90961 0.93155 0.90564 1.19752 1.17685 0.99380 1.15857 0.89970 1.26851 1.01595 0.96298 0.92530 1.69992 1.33062 1.35307 1.03684 0.85358 0.76647 0.78678 0.80100 1.17839 1.19112 1.18289 1.20656 0.97465 0.97503 1.09911 1.20312 1.00249 0.91831 0.99047 0.91262 0.91879 0.87514 0.85973 0.91821 0.87630 0.85095 0.83221 0.83351 0.73165 0.75398 0.89472 0.89126 0.89671 0.87396 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.31 10.11 127.77 1.29 2.60 16 2 N -0.62 -17.00 2.88 -869.32 -2.50 -19.50 16 3 C 0.18 4.29 5.11 85.63 0.44 4.73 16 4 C -0.15 -3.63 5.40 -19.77 -0.11 -3.73 16 5 C -0.10 -2.71 9.28 22.25 0.21 -2.50 16 6 C -0.15 -3.51 10.04 22.28 0.22 -3.29 16 7 C -0.10 -1.94 10.04 22.25 0.22 -1.72 16 8 C -0.16 -2.83 9.99 22.37 0.22 -2.60 16 9 C 0.12 2.42 6.68 22.51 0.15 2.57 16 10 O -0.50 -6.58 10.53 -92.48 -0.97 -7.55 16 11 C 0.69 26.50 7.90 179.05 1.41 27.91 16 12 O -0.62 -29.33 13.31 -4.00 -0.05 -29.38 16 13 N -0.66 -24.95 5.18 -316.78 -1.64 -26.59 16 14 C 0.01 0.51 6.25 38.57 0.24 0.75 16 15 C -0.09 -4.64 8.57 22.14 0.19 -4.45 16 16 C -0.20 -11.64 8.78 22.48 0.20 -11.44 16 17 C 0.08 4.37 5.64 -21.28 -0.12 4.25 16 18 C -0.50 -27.77 8.95 23.39 0.21 -27.56 16 19 H 0.08 4.36 8.03 -2.91 -0.02 4.34 16 20 C 0.05 2.43 4.81 85.24 0.41 2.84 16 21 N -0.80 -42.85 11.47 21.82 0.25 -42.60 16 22 Si 0.97 38.91 29.67 68.60 2.04 40.95 16 23 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 24 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 C -0.24 -11.90 9.74 22.48 0.22 -11.68 16 27 C -0.09 -4.25 9.90 22.13 0.22 -4.04 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.15 6.48 -2.39 -0.02 1.14 16 30 H 0.11 1.56 5.73 -2.39 -0.01 1.54 16 31 H 0.12 1.80 7.73 -2.39 -0.02 1.78 16 32 H 0.06 1.79 7.56 -2.39 -0.02 1.77 16 33 H 0.11 3.48 7.84 -2.91 -0.02 3.46 16 34 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.41 1.31 9.06 -74.06 -0.67 0.63 16 38 H 0.41 12.06 6.60 -92.71 -0.61 11.45 16 39 H 0.09 4.79 6.56 -2.91 -0.02 4.77 16 40 H 0.09 5.47 6.15 -2.91 -0.02 5.45 16 41 H 0.29 14.05 8.30 -92.70 -0.77 13.28 16 42 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 43 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -75.63 360.00 2.53 -73.10 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: -0.22 Total: 38.92 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 5.63 Total: -27.35 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -3.89 Total: -88.68 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.03 Total: -36.93 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.04 Total: 40.95 kcal Total: -75.63 2.53 -73.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916674149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.815 kcal (2) G-P(sol) polarization free energy of solvation -75.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds