Wall clock time and date at job start Tue Mar 31 2020 14:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35901 * 116.99707 * 2 1 4 4 C 1.38734 * 120.05369 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94344 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05877 * 0.02562 * 5 4 3 7 7 C 1.50692 * 119.94717 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.47016 * 89.99827 * 7 6 5 9 9 N 1.40101 * 119.99709 * 179.97438 * 8 7 6 10 10 C 1.29803 * 119.99747 * 179.97438 * 9 8 7 11 11 C 1.47393 * 120.00108 * 179.97438 * 10 9 8 12 12 C 1.39796 * 120.08491 * 359.73198 * 11 10 9 13 13 C 1.37736 * 119.90833 * 179.74265 * 12 11 10 14 14 C 1.39067 * 120.08836 * 0.52360 * 13 12 11 15 15 O 1.35666 * 119.90956 * 179.69993 * 14 13 12 16 16 C 1.34810 * 116.99771 * 174.47551 * 15 14 13 17 17 H 1.07998 * 120.00318 * 5.05686 * 16 15 14 18 18 C 1.38618 * 120.00130 * 185.05676 * 16 15 14 19 19 N 1.31576 * 120.00212 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00257 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46574 * 60.00479 * 20 18 16 22 22 H 1.48493 * 109.47256 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46977 * 300.00683 * 20 18 16 24 24 C 1.39064 * 120.17474 * 359.72911 * 14 13 12 25 25 C 1.37734 * 120.08917 * 0.02562 * 24 14 13 26 26 C 1.38270 * 120.10516 * 0.25136 * 6 5 4 27 27 C 1.38138 * 120.05784 * 359.45220 * 26 6 5 28 28 H 1.08999 * 109.46827 * 299.99650 * 1 2 3 29 29 H 1.09001 * 109.47034 * 59.99849 * 1 2 3 30 30 H 1.08993 * 109.46521 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.02886 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.97310 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47369 * 330.00006 * 7 6 5 34 34 H 1.09000 * 109.47407 * 210.00093 * 7 6 5 35 35 H 0.96997 * 119.99809 * 0.02562 * 8 7 6 36 36 H 1.08002 * 120.00322 * 0.02562 * 10 9 8 37 37 H 1.07994 * 120.04266 * 359.97033 * 12 11 10 38 38 H 1.08000 * 119.95314 * 180.25642 * 13 12 11 39 39 H 0.96997 * 120.00680 * 179.97438 * 19 18 16 40 40 H 1.07997 * 119.95381 * 179.97438 * 24 14 13 41 41 H 1.07995 * 120.04913 * 179.97438 * 25 24 14 42 42 H 1.08002 * 119.96765 * 179.70832 * 26 6 5 43 43 H 1.08004 * 120.02969 * 180.25316 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 0.0000 6 6 3.3019 3.6759 0.0016 7 6 3.9860 5.0186 0.0028 8 7 4.2071 5.4552 -1.3781 9 7 4.8318 6.6830 -1.6330 10 6 5.0282 7.0696 -2.8565 11 6 5.6849 8.3616 -3.1247 12 6 6.0920 9.1746 -2.0629 13 6 6.7101 10.3788 -2.3177 14 6 6.9196 10.7912 -3.6292 15 8 7.5233 11.9808 -3.8760 16 6 7.8005 12.2710 -5.1630 17 1 7.4700 11.6085 -5.9492 18 6 8.5097 13.4199 -5.4772 19 7 8.9128 14.2268 -4.5193 20 14 8.8944 13.8217 -7.2605 21 1 7.6265 13.9637 -8.0204 22 1 9.6575 15.0938 -7.3278 23 1 9.7053 12.7266 -7.8508 24 6 6.5113 9.9877 -4.6882 25 6 5.8971 8.7798 -4.4417 26 6 1.9210 3.6048 0.0079 27 6 1.2915 2.3752 0.0012 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 4.0209 0.3800 -0.0014 32 1 5.1345 2.5751 0.0000 33 1 4.9442 4.9378 0.5161 34 1 3.3582 5.7458 0.5177 35 1 3.9203 4.8945 -2.1158 36 1 4.7096 6.4450 -3.6779 37 1 5.9253 8.8572 -1.0442 38 1 7.0286 11.0056 -1.4978 39 1 9.4094 15.0305 -4.7391 40 1 6.6754 10.3117 -5.7053 41 1 5.5799 8.1565 -5.2647 42 1 1.3342 4.5114 0.0139 43 1 0.2129 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917547238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:26 Heat of formation + Delta-G solvation = 31.883463 kcal Electronic energy + Delta-G solvation = -24438.448509 eV Core-core repulsion = 20643.882266 eV Total energy + Delta-G solvation = -3794.566244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.56901 -38.99273 -38.28051 -37.01849 -35.86358 -33.19287 -32.28546 -31.50859 -30.31781 -30.18740 -28.45715 -27.52929 -25.55980 -24.75462 -23.05452 -22.40105 -21.79618 -21.45224 -19.92606 -18.60316 -18.02169 -17.21597 -16.69953 -16.39297 -16.21630 -16.04152 -15.20482 -14.67990 -14.54813 -14.43885 -14.34303 -14.01256 -13.94459 -13.65984 -13.45017 -13.34453 -12.99529 -12.71735 -12.45052 -12.33691 -12.03910 -11.85856 -11.68430 -11.49205 -11.25497 -11.13105 -11.01095 -10.71391 -10.67379 -10.46087 -9.74210 -9.41395 -9.33576 -8.91653 -8.59446 -8.18632 -8.11232 -6.81189 -6.48970 -4.06022 0.89849 0.94893 1.73095 2.28921 2.80597 3.02036 3.06848 3.12051 3.15898 3.24820 3.55553 3.94212 4.34507 4.44484 4.50000 4.61812 4.66014 4.67696 4.93901 4.97656 4.98881 5.08352 5.19273 5.24039 5.28819 5.41933 5.45004 5.63174 5.66245 5.81428 5.84658 5.89035 5.92653 6.20107 6.27076 6.31587 6.32944 6.59680 6.71985 6.91722 6.92913 7.08560 7.20351 7.35064 7.39060 7.43472 7.81284 7.96173 8.73613 8.96179 9.65679 10.68380 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.042533 B = 0.001497 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.161705 B =18697.038457 C =18975.518617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.131 3.869 4 C -0.155 4.155 5 C -0.059 4.059 6 C -0.140 4.140 7 C 0.208 3.792 8 N -0.672 5.672 9 N -0.254 5.254 10 C 0.100 3.900 11 C -0.151 4.151 12 C -0.037 4.037 13 C -0.199 4.199 14 C 0.163 3.837 15 O -0.172 6.172 16 C -0.392 4.392 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.238 4.238 25 C -0.045 4.045 26 C -0.058 4.058 27 C -0.212 4.212 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.370 0.630 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.272 0.728 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.677 -24.739 7.347 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.085 3.915 4 C -0.173 4.173 5 C -0.077 4.077 6 C -0.142 4.142 7 C 0.084 3.916 8 N -0.411 5.411 9 N -0.061 5.061 10 C -0.110 4.110 11 C -0.154 4.154 12 C -0.057 4.057 13 C -0.218 4.218 14 C 0.107 3.893 15 O -0.074 6.074 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.493 5.493 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.258 4.258 25 C -0.066 4.066 26 C -0.077 4.077 27 C -0.230 4.230 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.207 0.793 36 H 0.114 0.886 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.147 0.853 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.296 -24.329 8.702 29.530 hybrid contribution -0.475 -0.352 -2.062 2.145 sum -14.772 -24.681 6.640 29.520 Atomic orbital electron populations 1.23078 0.78214 1.04057 1.01493 1.86078 1.21552 1.26988 1.88563 1.19109 0.92442 0.84171 0.95737 1.20452 0.91354 0.98756 1.06787 1.20963 1.00142 0.90819 0.95805 1.19863 0.93660 0.95052 1.05583 1.19628 0.98700 0.90277 0.82958 1.47906 1.69536 1.17980 1.05637 1.74198 1.09886 1.00102 1.21920 1.23880 0.99216 0.96190 0.91730 1.17845 1.09814 0.94389 0.93370 1.20816 0.94445 0.92327 0.98136 1.20182 1.08606 0.98642 0.94386 1.19550 0.90734 0.85729 0.93291 1.83949 1.65372 1.28490 1.29552 1.21330 1.36181 1.08605 0.80734 0.88870 1.25315 0.95817 0.95172 1.00166 1.70036 1.34565 1.12271 1.32439 0.85765 0.78970 0.78320 0.80303 1.19436 1.20249 1.19424 1.21039 1.08201 0.96897 0.99638 1.20770 0.96036 0.95117 0.94696 1.20926 0.93933 0.97209 0.95617 1.21244 1.00135 0.92268 1.09376 0.92526 0.92536 0.88152 0.85031 0.84980 0.92033 0.92126 0.79318 0.88599 0.86082 0.86343 0.91850 0.85289 0.87170 0.85459 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.63 10.50 -19.43 -0.20 -2.83 16 3 C 0.13 1.14 6.69 -39.22 -0.26 0.88 16 4 C -0.15 -1.31 9.99 -39.43 -0.39 -1.70 16 5 C -0.06 -0.49 9.69 -39.60 -0.38 -0.88 16 6 C -0.14 -1.25 5.25 -104.60 -0.55 -1.80 16 7 C 0.21 2.15 6.79 -5.20 -0.04 2.12 16 8 N -0.67 -8.34 6.63 -11.66 -0.08 -8.41 16 9 N -0.25 -3.91 10.61 32.15 0.34 -3.57 16 10 C 0.10 1.54 10.75 -14.68 -0.16 1.38 16 11 C -0.15 -2.68 5.87 -105.00 -0.62 -3.30 16 12 C -0.04 -0.70 9.57 -39.18 -0.37 -1.07 16 13 C -0.20 -4.23 9.97 -39.46 -0.39 -4.63 16 14 C 0.16 3.89 6.65 -38.97 -0.26 3.63 16 15 O -0.17 -4.84 9.75 0.36 0.00 -4.83 16 16 C -0.39 -10.75 9.48 30.87 0.29 -10.46 16 17 H 0.09 2.34 5.19 -52.49 -0.27 2.06 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 20 Si 0.94 20.10 29.55 -169.99 -5.02 15.07 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.24 -5.04 9.15 -39.46 -0.36 -5.41 16 25 C -0.05 -0.82 9.78 -39.18 -0.38 -1.20 16 26 C -0.06 -0.48 9.69 -39.61 -0.38 -0.86 16 27 C -0.21 -1.65 9.04 -39.44 -0.36 -2.01 16 28 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.37 4.18 8.42 -182.60 -1.54 2.65 16 36 H 0.10 1.25 8.02 -52.49 -0.42 0.83 16 37 H 0.12 2.10 7.55 -52.49 -0.40 1.71 16 38 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 40 H 0.13 2.69 5.62 -52.49 -0.29 2.40 16 41 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.13 0.74 6.30 -52.48 -0.33 0.41 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -31.48 375.02 -8.83 -40.32 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.56 Total: 5.87 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -3.72 Total: -23.21 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 1.02 Total: -36.03 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.20 Total: -7.67 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.48 -8.83 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917547238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.199 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds