Wall clock time and date at job start Tue Mar 31 2020 14:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35901 * 116.99707 * 2 1 4 4 C 1.38734 * 120.05369 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94344 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05877 * 0.02562 * 5 4 3 7 7 C 1.50692 * 119.94717 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.47016 * 89.99827 * 7 6 5 9 9 N 1.40101 * 119.99709 * 179.97438 * 8 7 6 10 10 C 1.29803 * 119.99747 * 179.97438 * 9 8 7 11 11 C 1.47393 * 120.00108 * 179.97438 * 10 9 8 12 12 C 1.39796 * 120.08491 * 359.73198 * 11 10 9 13 13 C 1.37736 * 119.90833 * 179.74265 * 12 11 10 14 14 C 1.39067 * 120.08836 * 0.52360 * 13 12 11 15 15 O 1.35666 * 119.90956 * 179.69993 * 14 13 12 16 16 C 1.34810 * 116.99771 * 174.47551 * 15 14 13 17 17 H 1.07998 * 120.00318 * 5.05686 * 16 15 14 18 18 C 1.38618 * 120.00130 * 185.05676 * 16 15 14 19 19 N 1.31576 * 120.00212 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00257 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46574 * 60.00479 * 20 18 16 22 22 H 1.48493 * 109.47256 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46977 * 300.00683 * 20 18 16 24 24 C 1.39064 * 120.17474 * 359.72911 * 14 13 12 25 25 C 1.37734 * 120.08917 * 0.02562 * 24 14 13 26 26 C 1.38270 * 120.10516 * 0.25136 * 6 5 4 27 27 C 1.38138 * 120.05784 * 359.45220 * 26 6 5 28 28 H 1.08999 * 109.46827 * 299.99650 * 1 2 3 29 29 H 1.09001 * 109.47034 * 59.99849 * 1 2 3 30 30 H 1.08993 * 109.46521 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.02886 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.97310 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47369 * 330.00006 * 7 6 5 34 34 H 1.09000 * 109.47407 * 210.00093 * 7 6 5 35 35 H 0.96997 * 119.99809 * 0.02562 * 8 7 6 36 36 H 1.08002 * 120.00322 * 0.02562 * 10 9 8 37 37 H 1.07994 * 120.04266 * 359.97033 * 12 11 10 38 38 H 1.08000 * 119.95314 * 180.25642 * 13 12 11 39 39 H 0.96997 * 120.00680 * 179.97438 * 19 18 16 40 40 H 1.07997 * 119.95381 * 179.97438 * 24 14 13 41 41 H 1.07995 * 120.04913 * 179.97438 * 25 24 14 42 42 H 1.08002 * 119.96765 * 179.70832 * 26 6 5 43 43 H 1.08004 * 120.02969 * 180.25316 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 0.0000 6 6 3.3019 3.6759 0.0016 7 6 3.9860 5.0186 0.0028 8 7 4.2071 5.4552 -1.3781 9 7 4.8318 6.6830 -1.6330 10 6 5.0282 7.0696 -2.8565 11 6 5.6849 8.3616 -3.1247 12 6 6.0920 9.1746 -2.0629 13 6 6.7101 10.3788 -2.3177 14 6 6.9196 10.7912 -3.6292 15 8 7.5233 11.9808 -3.8760 16 6 7.8005 12.2710 -5.1630 17 1 7.4700 11.6085 -5.9492 18 6 8.5097 13.4199 -5.4772 19 7 8.9128 14.2268 -4.5193 20 14 8.8944 13.8217 -7.2605 21 1 7.6265 13.9637 -8.0204 22 1 9.6575 15.0938 -7.3278 23 1 9.7053 12.7266 -7.8508 24 6 6.5113 9.9877 -4.6882 25 6 5.8971 8.7798 -4.4417 26 6 1.9210 3.6048 0.0079 27 6 1.2915 2.3752 0.0012 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 4.0209 0.3800 -0.0014 32 1 5.1345 2.5751 0.0000 33 1 4.9442 4.9378 0.5161 34 1 3.3582 5.7458 0.5177 35 1 3.9203 4.8945 -2.1158 36 1 4.7096 6.4450 -3.6779 37 1 5.9253 8.8572 -1.0442 38 1 7.0286 11.0056 -1.4978 39 1 9.4094 15.0305 -4.7391 40 1 6.6754 10.3117 -5.7053 41 1 5.5799 8.1565 -5.2647 42 1 1.3342 4.5114 0.0139 43 1 0.2129 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917547238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:25 Heat of formation + Delta-G solvation = 13.411528 kcal Electronic energy + Delta-G solvation = -24439.249513 eV Core-core repulsion = 20643.882266 eV Total energy + Delta-G solvation = -3795.367247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14864 -40.70824 -38.97573 -38.48901 -37.13008 -34.44130 -33.94979 -32.11385 -31.83527 -31.36634 -29.50929 -28.19978 -27.40418 -25.71860 -23.90928 -23.64712 -23.29578 -22.16168 -21.35677 -19.80592 -19.15859 -18.85740 -17.69907 -17.29067 -17.17451 -16.67273 -16.32903 -16.01646 -15.97311 -15.55067 -15.51679 -15.25881 -14.97544 -14.90360 -14.55176 -14.38871 -14.18009 -13.96732 -13.56182 -13.50120 -13.34380 -12.86209 -12.72655 -12.63369 -12.47098 -12.35105 -12.14190 -12.10929 -11.99257 -11.75480 -11.18935 -10.86816 -10.77614 -10.02006 -9.77318 -9.49008 -9.21681 -8.44726 -8.25046 -6.11351 0.24763 0.26353 0.34048 0.67364 1.38785 1.47090 1.55016 1.80795 2.08652 2.20842 2.33832 2.82336 2.93456 3.27657 3.53691 3.74576 3.79403 3.91646 4.01138 4.15520 4.20234 4.24084 4.36561 4.37320 4.40186 4.49461 4.58561 4.63691 4.71978 4.76153 4.78307 4.80371 5.04721 5.06047 5.10967 5.21225 5.30165 5.33261 5.40658 5.61301 5.65556 5.72514 5.73613 5.87521 6.05371 6.20621 6.32311 6.38939 6.99904 7.62034 7.79894 8.78147 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.042533 B = 0.001497 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.161705 B =18697.038457 C =18975.518617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.122 3.878 4 C -0.166 4.166 5 C -0.060 4.060 6 C -0.147 4.147 7 C 0.208 3.792 8 N -0.661 5.661 9 N -0.261 5.261 10 C 0.086 3.914 11 C -0.125 4.125 12 C -0.039 4.039 13 C -0.208 4.208 14 C 0.123 3.877 15 O -0.229 6.229 16 C -0.415 4.415 17 H 0.107 0.893 18 C -0.022 4.022 19 N -0.920 5.920 20 Si 1.019 2.981 21 H -0.256 1.256 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.242 4.242 25 C -0.039 4.039 26 C -0.061 4.061 27 C -0.213 4.213 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.379 0.621 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.273 0.727 40 H 0.128 0.872 41 H 0.155 0.845 42 H 0.137 0.863 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.753 -28.118 6.489 33.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.076 3.924 4 C -0.185 4.185 5 C -0.079 4.079 6 C -0.148 4.148 7 C 0.085 3.915 8 N -0.401 5.401 9 N -0.068 5.068 10 C -0.124 4.124 11 C -0.128 4.128 12 C -0.059 4.059 13 C -0.227 4.227 14 C 0.071 3.929 15 O -0.134 6.134 16 C -0.490 4.490 17 H 0.124 0.876 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.838 3.162 21 H -0.180 1.180 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.261 4.261 25 C -0.059 4.059 26 C -0.080 4.080 27 C -0.231 4.231 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.217 0.783 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.146 0.854 41 H 0.172 0.828 42 H 0.155 0.845 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.418 -27.780 7.865 33.213 hybrid contribution -0.113 0.205 -1.507 1.525 sum -16.531 -27.575 6.358 32.773 Atomic orbital electron populations 1.23349 0.76410 1.05598 1.02304 1.86059 1.23512 1.26942 1.88455 1.19318 0.92760 0.84716 0.95565 1.20636 0.91734 0.99139 1.06989 1.21069 1.00625 0.90688 0.95513 1.19741 0.93952 0.94317 1.06815 1.19709 0.98911 0.91069 0.81810 1.48036 1.68334 1.16812 1.06888 1.74065 1.08738 1.01429 1.22571 1.23734 1.00314 0.95563 0.92828 1.18217 1.06828 0.94819 0.92957 1.21024 0.93945 0.91415 0.99564 1.20347 1.09078 0.99690 0.93608 1.20057 0.91955 0.85866 0.95044 1.83922 1.68434 1.31011 1.30052 1.21857 1.36649 1.09325 0.81213 0.87562 1.26610 0.95385 0.94719 1.05279 1.70192 1.37018 1.13383 1.35181 0.84638 0.79253 0.78269 0.74009 1.18003 1.19879 1.18078 1.21188 1.08266 0.97783 0.98879 1.21141 0.94524 0.94069 0.96199 1.21081 0.93806 0.97840 0.95271 1.21452 1.01180 0.91759 1.08752 0.91607 0.91752 0.86418 0.84316 0.84175 0.92047 0.92046 0.78300 0.85370 0.84459 0.86922 0.91854 0.85438 0.82782 0.84517 0.83456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -4.93 10.50 -92.43 -0.97 -5.90 16 3 C 0.12 1.89 6.69 22.51 0.15 2.04 16 4 C -0.17 -2.53 9.99 22.37 0.22 -2.31 16 5 C -0.06 -0.89 9.69 22.25 0.22 -0.67 16 6 C -0.15 -2.26 5.25 -19.85 -0.10 -2.37 16 7 C 0.21 3.76 6.79 85.63 0.58 4.34 16 8 N -0.66 -14.15 6.63 -190.79 -1.26 -15.42 16 9 N -0.26 -7.10 10.61 -52.21 -0.55 -7.65 16 10 C 0.09 2.29 10.75 87.41 0.94 3.23 16 11 C -0.13 -4.10 5.87 -20.11 -0.12 -4.22 16 12 C -0.04 -1.44 9.57 22.53 0.22 -1.22 16 13 C -0.21 -9.12 9.97 22.35 0.22 -8.89 16 14 C 0.12 6.09 6.65 22.67 0.15 6.24 16 15 O -0.23 -13.71 9.75 -21.61 -0.21 -13.92 16 16 C -0.41 -23.80 9.48 67.91 0.64 -23.15 16 17 H 0.11 5.50 5.19 -2.91 -0.02 5.48 16 18 C -0.02 -1.25 5.49 84.82 0.47 -0.78 16 19 N -0.92 -56.24 13.67 21.61 0.30 -55.94 16 20 Si 1.02 42.16 29.55 68.60 2.03 44.19 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 24 C -0.24 -10.20 9.15 22.35 0.20 -9.99 16 25 C -0.04 -1.29 9.78 22.53 0.22 -1.07 16 26 C -0.06 -0.86 9.69 22.25 0.22 -0.64 16 27 C -0.21 -2.80 9.04 22.36 0.20 -2.60 16 28 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 29 H 0.06 0.33 7.66 -2.39 -0.02 0.31 16 30 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 34 H 0.06 1.12 8.08 -2.39 -0.02 1.10 16 35 H 0.38 7.12 8.42 -213.32 -1.80 5.33 16 36 H 0.13 2.64 8.02 -2.91 -0.02 2.62 16 37 H 0.14 4.54 7.55 -2.91 -0.02 4.52 16 38 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.13 5.33 5.62 -2.91 -0.02 5.32 16 41 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 42 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.15 1.28 6.30 -2.91 -0.02 1.26 16 Total: -1.00 -72.35 375.02 4.11 -68.24 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.75 Total: 27.26 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 5.54 Total: -40.84 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -1.52 Total: -79.01 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -1.18 Total: -19.82 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -72.35 4.11 -68.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917547238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.647 kcal (2) G-P(sol) polarization free energy of solvation -72.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds