Wall clock time and date at job start Tue Mar 31 2020 14:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00109 * 2 1 4 4 C 1.38736 * 120.05317 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94332 * 180.02562 * 4 3 2 6 6 C 1.38272 * 120.05463 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94251 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.47222 * 90.00249 * 7 6 5 9 9 N 1.40100 * 120.00176 * 180.02562 * 8 7 6 10 10 C 1.29736 * 119.99715 * 180.02562 * 9 8 7 11 11 C 1.47503 * 119.99738 * 180.02562 * 10 9 8 12 12 C 1.39761 * 120.12052 * 359.71553 * 11 10 9 13 13 C 1.37980 * 119.97298 * 179.70180 * 12 11 10 14 14 C 1.38251 * 120.23406 * 0.60104 * 13 12 11 15 15 C 1.38976 * 120.24627 * 359.67731 * 14 13 12 16 16 O 1.35763 * 119.99329 * 179.97438 * 15 14 13 17 17 C 1.34828 * 116.99938 * 174.48650 * 16 15 14 18 18 H 1.07994 * 120.00092 * 5.05239 * 17 16 15 19 19 C 1.38655 * 119.99707 * 185.06073 * 17 16 15 20 20 N 1.31552 * 120.00093 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47122 * 59.99874 * 21 19 17 23 23 H 1.48494 * 109.47319 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47390 * 300.00126 * 21 19 17 25 25 C 1.38609 * 120.01370 * 0.02562 * 15 14 13 26 26 C 1.38267 * 120.11014 * 0.25220 * 6 5 4 27 27 C 1.38139 * 120.05729 * 359.45253 * 26 6 5 28 28 H 1.09004 * 109.47245 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47106 * 300.00497 * 1 2 3 30 30 H 1.09008 * 109.47075 * 60.00054 * 1 2 3 31 31 H 1.08000 * 120.02726 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.97352 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47133 * 209.99864 * 7 6 5 34 34 H 1.08994 * 109.47456 * 330.00004 * 7 6 5 35 35 H 0.97008 * 119.99356 * 359.97438 * 8 7 6 36 36 H 1.07998 * 120.00378 * 359.97438 * 10 9 8 37 37 H 1.07992 * 120.01127 * 359.97438 * 12 11 10 38 38 H 1.08005 * 119.87913 * 180.30373 * 13 12 11 39 39 H 1.07999 * 119.87502 * 179.69627 * 14 13 12 40 40 H 0.96999 * 119.99912 * 180.02562 * 20 19 17 41 41 H 1.08008 * 120.11273 * 180.02562 * 25 15 14 42 42 H 1.08003 * 119.96827 * 179.70866 * 26 6 5 43 43 H 1.08001 * 120.03236 * 180.25166 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.2073 5.4551 -1.3781 9 7 4.8331 6.6823 -1.6330 10 6 5.0284 7.0692 -2.8559 11 6 5.6877 8.3610 -3.1243 12 6 6.0977 9.1730 -2.0633 13 6 6.7197 10.3781 -2.3178 14 6 6.9284 10.7923 -3.6202 15 6 6.5194 9.9950 -4.6825 16 8 6.7264 10.4070 -5.9594 17 6 6.4109 9.5388 -6.9415 18 1 5.9376 8.5987 -6.6997 19 6 6.6944 9.8529 -8.2619 20 7 7.2706 10.9983 -8.5565 21 14 6.2580 8.6498 -9.6225 22 1 4.7929 8.4075 -9.6179 23 1 6.6610 9.2181 -10.9339 24 1 6.9724 7.3675 -9.3975 25 6 5.8990 8.7797 -4.4385 26 6 1.9212 3.6047 0.0079 27 6 1.2916 2.3751 0.0013 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8901 31 1 4.0208 0.3797 -0.0005 32 1 5.1346 2.5748 0.0000 33 1 3.3585 5.7457 0.5177 34 1 4.9444 4.9375 0.5160 35 1 3.9210 4.8940 -2.1158 36 1 4.7089 6.4450 -3.6773 37 1 5.9317 8.8554 -1.0446 38 1 7.0404 11.0021 -1.4967 39 1 7.4115 11.7389 -3.8128 40 1 7.4686 11.2181 -9.4802 41 1 5.5808 8.1586 -5.2629 42 1 1.3344 4.5114 0.0139 43 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917547451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:29 Heat of formation + Delta-G solvation = 33.256990 kcal Electronic energy + Delta-G solvation = -24731.874609 eV Core-core repulsion = 20937.367926 eV Total energy + Delta-G solvation = -3794.506683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.56949 -38.96983 -38.29141 -36.96761 -35.92816 -33.33802 -32.21838 -31.51912 -30.81133 -29.28146 -28.57016 -27.68215 -25.44556 -24.88604 -23.07011 -22.76273 -21.59496 -21.41722 -19.91939 -18.60227 -17.99908 -17.03861 -16.69219 -16.42053 -16.18992 -15.87308 -15.10514 -14.99815 -14.62488 -14.40130 -14.31345 -14.14884 -13.96236 -13.63321 -13.50668 -13.36234 -13.02876 -12.62473 -12.44675 -12.35876 -12.02830 -11.84352 -11.64965 -11.48597 -11.25467 -11.12278 -10.79521 -10.72316 -10.69240 -10.44761 -9.84381 -9.41484 -9.36791 -8.85318 -8.59825 -8.58649 -7.45963 -7.09491 -6.41128 -4.00680 0.88995 0.94773 1.55962 2.40004 2.81142 2.95212 3.08626 3.14949 3.18494 3.20069 3.51607 3.99280 4.34482 4.43560 4.48076 4.62427 4.67259 4.69025 4.93425 4.96899 4.99796 5.12503 5.15732 5.20625 5.32608 5.39559 5.41774 5.64026 5.65830 5.82877 5.84630 5.91433 6.02289 6.15325 6.25372 6.25700 6.32537 6.51988 6.74269 6.86596 6.93185 7.10952 7.17983 7.33129 7.39654 7.44829 7.82411 8.03002 8.60189 9.04422 9.74906 10.76963 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013918 B = 0.001969 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.342166 B =14214.012153 C =15841.136668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.132 3.868 4 C -0.155 4.155 5 C -0.058 4.058 6 C -0.142 4.142 7 C 0.207 3.793 8 N -0.668 5.668 9 N -0.232 5.232 10 C 0.081 3.919 11 C -0.005 4.005 12 C -0.175 4.175 13 C -0.084 4.084 14 C -0.180 4.180 15 C 0.150 3.850 16 O -0.179 6.179 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.939 3.061 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.208 4.208 26 C -0.057 4.057 27 C -0.212 4.212 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.373 0.627 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.270 0.730 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.639 -18.726 17.351 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.087 3.913 4 C -0.173 4.173 5 C -0.077 4.077 6 C -0.144 4.144 7 C 0.083 3.917 8 N -0.406 5.406 9 N -0.038 5.038 10 C -0.130 4.130 11 C -0.007 4.007 12 C -0.196 4.196 13 C -0.102 4.102 14 C -0.201 4.201 15 C 0.097 3.903 16 O -0.083 6.083 17 C -0.468 4.468 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.231 4.231 26 C -0.076 4.076 27 C -0.230 4.230 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.211 0.789 36 H 0.122 0.878 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.318 -18.433 18.226 28.285 hybrid contribution -0.899 -1.200 -1.829 2.365 sum -12.217 -19.633 16.398 28.347 Atomic orbital electron populations 1.23086 0.78182 1.04089 1.01503 1.86077 1.21578 1.26969 1.88519 1.19114 0.92442 0.84187 0.95589 1.20456 0.91366 0.98768 1.06755 1.20962 1.00140 0.90823 0.95749 1.19836 0.93676 0.94955 1.05892 1.19668 0.98825 0.90448 0.82717 1.48028 1.68822 1.17770 1.06007 1.74149 1.07757 0.99794 1.22125 1.24066 1.00253 0.96729 0.91999 1.18021 0.98242 0.91362 0.93121 1.20776 1.05135 0.95803 0.97878 1.20613 0.98335 0.96001 0.95289 1.20348 1.07402 1.01433 0.90900 1.19187 0.92851 0.91851 0.86459 1.84003 1.73948 1.40575 1.09794 1.21235 1.40732 1.00146 0.84710 0.89202 1.25255 0.96469 0.97325 0.97438 1.70025 1.38812 1.21327 1.19722 0.85813 0.79037 0.79463 0.79299 1.19576 1.20330 1.19550 1.21180 1.07313 0.98943 0.95615 1.20924 0.93902 0.97242 0.95555 1.21249 1.00169 0.92256 1.09350 0.88121 0.92529 0.92507 0.84989 0.84962 0.91959 0.91872 0.78938 0.87815 0.86629 0.86811 0.86461 0.92043 0.85259 0.85438 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.71 10.50 -19.41 -0.20 -2.91 16 3 C 0.13 1.18 6.69 -39.21 -0.26 0.92 16 4 C -0.15 -1.34 9.99 -39.43 -0.39 -1.74 16 5 C -0.06 -0.50 9.69 -39.60 -0.38 -0.88 16 6 C -0.14 -1.28 5.25 -104.60 -0.55 -1.83 16 7 C 0.21 2.11 6.79 -5.19 -0.04 2.08 16 8 N -0.67 -8.42 6.63 -11.66 -0.08 -8.49 16 9 N -0.23 -3.62 10.61 32.16 0.34 -3.27 16 10 C 0.08 1.33 10.75 -14.66 -0.16 1.17 16 11 C -0.01 -0.10 5.87 -105.07 -0.62 -0.71 16 12 C -0.17 -3.17 9.58 -39.11 -0.37 -3.55 16 13 C -0.08 -1.52 10.02 -39.67 -0.40 -1.92 16 14 C -0.18 -3.79 9.98 -39.30 -0.39 -4.18 16 15 C 0.15 3.59 6.64 -39.17 -0.26 3.33 16 16 O -0.18 -5.08 9.76 0.01 0.00 -5.08 16 17 C -0.39 -10.85 9.48 30.89 0.29 -10.55 16 18 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 21 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.21 -4.49 8.90 -38.96 -0.35 -4.84 16 26 C -0.06 -0.48 9.69 -39.61 -0.38 -0.87 16 27 C -0.21 -1.70 9.04 -39.43 -0.36 -2.05 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 30 H 0.06 0.24 7.67 -51.92 -0.40 -0.16 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.37 4.39 8.42 -182.59 -1.54 2.85 16 36 H 0.10 1.53 8.02 -52.49 -0.42 1.11 16 37 H 0.12 1.93 7.55 -52.49 -0.40 1.53 16 38 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.13 2.74 5.63 -52.48 -0.30 2.45 16 42 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 43 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -31.92 375.06 -8.84 -40.76 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.56 Total: 5.96 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -3.72 Total: -23.52 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 1.02 Total: -36.26 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.20 Total: -7.99 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.92 -8.84 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917547451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.015 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds