Wall clock time and date at job start Tue Mar 31 2020 14:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00109 * 2 1 4 4 C 1.38736 * 120.05317 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94332 * 180.02562 * 4 3 2 6 6 C 1.38272 * 120.05463 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94251 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.47222 * 90.00249 * 7 6 5 9 9 N 1.40100 * 120.00176 * 180.02562 * 8 7 6 10 10 C 1.29736 * 119.99715 * 180.02562 * 9 8 7 11 11 C 1.47503 * 119.99738 * 180.02562 * 10 9 8 12 12 C 1.39761 * 120.12052 * 359.71553 * 11 10 9 13 13 C 1.37980 * 119.97298 * 179.70180 * 12 11 10 14 14 C 1.38251 * 120.23406 * 0.60104 * 13 12 11 15 15 C 1.38976 * 120.24627 * 359.67731 * 14 13 12 16 16 O 1.35763 * 119.99329 * 179.97438 * 15 14 13 17 17 C 1.34828 * 116.99938 * 174.48650 * 16 15 14 18 18 H 1.07994 * 120.00092 * 5.05239 * 17 16 15 19 19 C 1.38655 * 119.99707 * 185.06073 * 17 16 15 20 20 N 1.31552 * 120.00093 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47122 * 59.99874 * 21 19 17 23 23 H 1.48494 * 109.47319 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47390 * 300.00126 * 21 19 17 25 25 C 1.38609 * 120.01370 * 0.02562 * 15 14 13 26 26 C 1.38267 * 120.11014 * 0.25220 * 6 5 4 27 27 C 1.38139 * 120.05729 * 359.45253 * 26 6 5 28 28 H 1.09004 * 109.47245 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47106 * 300.00497 * 1 2 3 30 30 H 1.09008 * 109.47075 * 60.00054 * 1 2 3 31 31 H 1.08000 * 120.02726 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.97352 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47133 * 209.99864 * 7 6 5 34 34 H 1.08994 * 109.47456 * 330.00004 * 7 6 5 35 35 H 0.97008 * 119.99356 * 359.97438 * 8 7 6 36 36 H 1.07998 * 120.00378 * 359.97438 * 10 9 8 37 37 H 1.07992 * 120.01127 * 359.97438 * 12 11 10 38 38 H 1.08005 * 119.87913 * 180.30373 * 13 12 11 39 39 H 1.07999 * 119.87502 * 179.69627 * 14 13 12 40 40 H 0.96999 * 119.99912 * 180.02562 * 20 19 17 41 41 H 1.08008 * 120.11273 * 180.02562 * 25 15 14 42 42 H 1.08003 * 119.96827 * 179.70866 * 26 6 5 43 43 H 1.08001 * 120.03236 * 180.25166 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.2073 5.4551 -1.3781 9 7 4.8331 6.6823 -1.6330 10 6 5.0284 7.0692 -2.8559 11 6 5.6877 8.3610 -3.1243 12 6 6.0977 9.1730 -2.0633 13 6 6.7197 10.3781 -2.3178 14 6 6.9284 10.7923 -3.6202 15 6 6.5194 9.9950 -4.6825 16 8 6.7264 10.4070 -5.9594 17 6 6.4109 9.5388 -6.9415 18 1 5.9376 8.5987 -6.6997 19 6 6.6944 9.8529 -8.2619 20 7 7.2706 10.9983 -8.5565 21 14 6.2580 8.6498 -9.6225 22 1 4.7929 8.4075 -9.6179 23 1 6.6610 9.2181 -10.9339 24 1 6.9724 7.3675 -9.3975 25 6 5.8990 8.7797 -4.4385 26 6 1.9212 3.6047 0.0079 27 6 1.2916 2.3751 0.0013 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8901 31 1 4.0208 0.3797 -0.0005 32 1 5.1346 2.5748 0.0000 33 1 3.3585 5.7457 0.5177 34 1 4.9444 4.9375 0.5160 35 1 3.9210 4.8940 -2.1158 36 1 4.7089 6.4450 -3.6773 37 1 5.9317 8.8554 -1.0446 38 1 7.0404 11.0021 -1.4967 39 1 7.4115 11.7389 -3.8128 40 1 7.4686 11.2181 -9.4802 41 1 5.5808 8.1586 -5.2629 42 1 1.3344 4.5114 0.0139 43 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917547451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:28 Heat of formation + Delta-G solvation = 14.541515 kcal Electronic energy + Delta-G solvation = -24732.686173 eV Core-core repulsion = 20937.367926 eV Total energy + Delta-G solvation = -3795.318247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.16471 -40.68784 -39.00430 -38.43734 -37.25583 -34.48853 -34.07459 -32.18948 -31.97985 -30.65817 -29.82287 -28.28112 -27.28683 -25.92881 -24.11304 -23.65502 -23.17611 -22.18620 -21.36834 -19.79183 -19.17489 -18.66992 -17.67038 -17.29706 -16.98964 -16.68655 -16.67491 -16.08915 -15.89651 -15.80207 -15.49616 -15.31496 -15.05678 -14.88763 -14.57156 -14.25038 -14.21857 -14.06664 -13.53733 -13.49974 -13.33728 -12.87637 -12.72954 -12.56246 -12.42631 -12.25892 -12.21775 -12.11052 -12.01128 -11.77507 -11.30454 -11.01682 -10.76301 -10.04182 -9.99313 -9.23510 -9.06258 -8.48953 -8.41848 -6.09952 0.07900 0.22298 0.32601 0.78636 1.37683 1.47250 1.53500 1.70910 1.96906 2.21335 2.32555 2.79178 2.93445 3.27871 3.56657 3.70432 3.77723 3.89444 3.91174 4.14352 4.18749 4.34682 4.36145 4.37094 4.38832 4.48719 4.53123 4.60360 4.70647 4.73971 4.74581 4.77752 5.03124 5.08959 5.15578 5.17806 5.23827 5.29293 5.32621 5.58893 5.72116 5.72424 5.74140 5.84910 6.07021 6.21178 6.23744 6.37529 7.02882 7.43606 7.84135 8.81073 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013918 B = 0.001969 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.342166 B =14214.012153 C =15841.136668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.123 3.877 4 C -0.167 4.167 5 C -0.060 4.060 6 C -0.149 4.149 7 C 0.207 3.793 8 N -0.658 5.658 9 N -0.226 5.226 10 C 0.060 3.940 11 C 0.001 3.999 12 C -0.163 4.163 13 C -0.070 4.070 14 C -0.195 4.195 15 C 0.113 3.887 16 O -0.232 6.232 17 C -0.411 4.411 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.016 2.984 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.218 4.218 26 C -0.061 4.061 27 C -0.214 4.214 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.380 0.620 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.117 0.883 40 H 0.271 0.729 41 H 0.125 0.875 42 H 0.138 0.862 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.160 -21.026 19.457 31.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.077 3.923 4 C -0.186 4.186 5 C -0.079 4.079 6 C -0.150 4.150 7 C 0.084 3.916 8 N -0.397 5.397 9 N -0.034 5.034 10 C -0.151 4.151 11 C -0.002 4.002 12 C -0.184 4.184 13 C -0.088 4.088 14 C -0.215 4.215 15 C 0.063 3.937 16 O -0.139 6.139 17 C -0.487 4.487 18 H 0.120 0.880 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.835 3.165 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.182 1.182 25 C -0.240 4.240 26 C -0.080 4.080 27 C -0.232 4.232 28 H 0.136 0.864 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.218 0.782 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.173 0.827 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.142 0.858 42 H 0.156 0.844 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.860 -20.758 20.397 31.817 hybrid contribution -0.541 -0.650 -2.038 2.206 sum -13.401 -21.408 18.360 31.225 Atomic orbital electron populations 1.23354 0.76397 1.05625 1.02294 1.86057 1.23524 1.26952 1.88427 1.19327 0.92771 0.84730 0.95469 1.20646 0.91742 0.99188 1.07021 1.21085 1.00676 0.90692 0.95416 1.19743 0.93953 0.94341 1.07006 1.19798 0.99322 0.91182 0.81302 1.48246 1.67444 1.16564 1.07395 1.73993 1.06549 1.01008 1.21837 1.23783 1.02133 0.96361 0.92827 1.18216 0.97281 0.92538 0.92128 1.21170 1.03268 0.95244 0.98732 1.21032 0.96624 0.96215 0.94927 1.20607 1.07842 1.01443 0.91646 1.19726 0.94431 0.93652 0.85842 1.83965 1.76420 1.42039 1.11433 1.21757 1.40926 1.00715 0.85340 0.88027 1.26545 0.96235 0.99373 0.99944 1.70178 1.41498 1.23920 1.20325 0.84684 0.79386 0.76960 0.75434 1.18166 1.19814 1.18240 1.21193 1.07644 0.98271 0.96890 1.21096 0.93831 0.97868 0.95163 1.21462 1.01205 0.91792 1.08779 0.86378 0.91508 0.91867 0.84318 0.84073 0.91442 0.91452 0.78229 0.86501 0.84208 0.82662 0.86490 0.91968 0.85782 0.84405 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -5.19 10.50 -92.36 -0.97 -6.16 16 3 C 0.12 1.99 6.69 22.51 0.15 2.14 16 4 C -0.17 -2.66 9.99 22.37 0.22 -2.44 16 5 C -0.06 -0.91 9.69 22.26 0.22 -0.70 16 6 C -0.15 -2.33 5.25 -19.85 -0.10 -2.44 16 7 C 0.21 3.65 6.79 85.63 0.58 4.23 16 8 N -0.66 -14.72 6.63 -190.79 -1.26 -15.98 16 9 N -0.23 -6.40 10.61 -52.16 -0.55 -6.95 16 10 C 0.06 1.84 10.75 87.45 0.94 2.78 16 11 C 0.00 0.03 5.87 -20.15 -0.12 -0.09 16 12 C -0.16 -5.48 9.58 22.58 0.22 -5.26 16 13 C -0.07 -2.37 10.02 22.21 0.22 -2.15 16 14 C -0.20 -8.27 9.98 22.45 0.22 -8.04 16 15 C 0.11 5.64 6.64 22.54 0.15 5.79 16 16 O -0.23 -13.90 9.76 -22.87 -0.22 -14.12 16 17 C -0.41 -23.81 9.48 67.92 0.64 -23.16 16 18 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 19 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 20 N -0.92 -56.53 13.67 21.61 0.30 -56.24 16 21 Si 1.02 42.76 29.55 68.60 2.03 44.79 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 C -0.22 -9.54 8.90 22.67 0.20 -9.34 16 26 C -0.06 -0.88 9.69 22.25 0.22 -0.67 16 27 C -0.21 -2.96 9.04 22.37 0.20 -2.76 16 28 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.36 7.66 -2.38 -0.02 0.34 16 30 H 0.06 0.39 7.67 -2.38 -0.02 0.37 16 31 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.07 1.16 8.08 -2.38 -0.02 1.14 16 34 H 0.07 1.16 8.08 -2.39 -0.02 1.15 16 35 H 0.38 7.92 8.42 -213.31 -1.80 6.12 16 36 H 0.12 3.26 8.02 -2.91 -0.02 3.23 16 37 H 0.14 4.08 7.55 -2.91 -0.02 4.05 16 38 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 39 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.12 5.43 5.63 -2.91 -0.02 5.41 16 42 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.15 1.38 6.30 -2.91 -0.02 1.37 16 Total: -1.00 -72.35 375.06 4.10 -68.24 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.75 Total: 28.17 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 5.54 Total: -41.74 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -1.52 Total: -79.17 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -1.19 Total: -20.28 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -72.35 4.10 -68.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917547451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.783 kcal (2) G-P(sol) polarization free energy of solvation -72.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds