Wall clock time and date at job start Tue Mar 31 2020 14:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46505 * 109.45150 * 181.24130 * 12 11 10 14 14 C 1.34778 * 119.99485 * 84.78885 * 13 12 11 15 15 O 1.21546 * 120.00451 * 0.02562 * 14 13 12 16 16 C 1.47901 * 119.99640 * 179.97438 * 14 13 12 17 17 N 1.32135 * 120.03319 * 359.72868 * 16 14 13 18 18 C 1.31981 * 122.76980 * 179.69883 * 17 16 14 19 19 C 1.37781 * 121.72642 * 0.58350 * 18 17 16 20 20 C 1.40388 * 118.72586 * 359.71924 * 19 18 17 21 21 C 1.40646 * 122.27975 * 180.02562 * 20 19 18 22 22 C 1.36644 * 117.95364 * 179.97438 * 21 20 19 23 23 C 1.39393 * 119.92278 * 359.97438 * 22 21 20 24 24 N 1.31200 * 121.85824 * 0.02562 * 23 22 21 25 25 C 1.33258 * 121.21964 * 359.97438 * 24 23 22 26 26 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 27 27 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 28 28 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 30 30 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 31 31 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 32 32 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 33 33 H 1.08990 * 109.33376 * 301.13470 * 12 11 10 34 34 H 0.96997 * 120.00106 * 264.79224 * 13 12 11 35 35 H 1.07991 * 119.14051 * 180.32986 * 18 17 16 36 36 H 1.07992 * 120.63853 * 179.70109 * 19 18 17 37 37 H 1.07996 * 121.02138 * 359.95702 * 21 20 19 38 38 H 1.07998 * 120.03785 * 179.97438 * 22 21 20 39 39 H 1.08009 * 119.07154 * 179.97438 * 23 22 21 40 40 H 1.09003 * 109.49897 * 178.74799 * 26 12 11 41 41 H 1.09004 * 109.50093 * 58.65268 * 26 12 11 42 42 H 1.09001 * 109.58688 * 246.20238 * 27 9 7 43 43 H 1.08996 * 109.58570 * 6.47946 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0399 -5.6476 2.9308 14 6 -0.0050 -6.2695 3.5121 15 8 -1.1361 -6.0453 3.1279 16 6 0.2249 -7.2258 4.6167 17 7 1.4548 -7.4749 5.0306 18 6 1.7214 -8.3130 6.0146 19 6 0.7238 -8.9985 6.6728 20 6 -0.6087 -8.7891 6.2837 21 6 -1.6849 -9.4485 6.9042 22 6 -2.9467 -9.1780 6.4550 23 6 -3.1343 -8.2719 5.4125 24 7 -2.1265 -7.6597 4.8373 25 6 -0.8714 -7.8787 5.2278 26 6 2.0675 -4.6173 0.9650 27 6 1.8138 -3.6528 -0.1979 28 1 -0.4850 0.8400 -0.0004 29 1 0.0995 -1.3342 1.6688 30 1 -0.6774 -2.6380 0.7364 31 1 1.3429 -2.9691 3.0021 32 1 -0.3879 -3.3839 3.0520 33 1 -0.0281 -5.0406 1.2310 34 1 1.9426 -5.8267 3.2372 35 1 2.7487 -8.4687 6.3089 36 1 0.9623 -9.6838 7.4726 37 1 -1.5190 -10.1472 7.7108 38 1 -3.7976 -9.6657 6.9071 39 1 -4.1376 -8.0686 5.0680 40 1 2.3043 -5.6062 0.5724 41 1 2.9025 -4.2536 1.5638 42 1 1.0401 -4.0605 -0.8485 43 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932218516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:25 Heat of formation + Delta-G solvation = 61.984048 kcal Electronic energy + Delta-G solvation = -26873.012523 eV Core-core repulsion = 23112.044290 eV Total energy + Delta-G solvation = -3760.968233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.57404 -39.40285 -38.24785 -37.16178 -34.31675 -34.00596 -32.19324 -31.72220 -30.85740 -29.91079 -29.28141 -25.92700 -24.92224 -24.40863 -23.59042 -22.15525 -21.78966 -20.41112 -19.40932 -18.84393 -17.83344 -17.80032 -16.78930 -16.31212 -15.72971 -15.43126 -15.01903 -14.73402 -14.67324 -14.27820 -14.18580 -13.72059 -13.48744 -13.43901 -13.31857 -12.96990 -12.89154 -12.55683 -12.43689 -12.29979 -11.41508 -11.13033 -11.07016 -10.84990 -10.69014 -10.32359 -10.27825 -10.14761 -10.10231 -9.95871 -9.69895 -9.68047 -9.57351 -9.22928 -8.80963 -8.55762 -8.33550 -6.61725 -5.72603 -3.15536 -0.37033 0.34318 1.35107 2.47072 3.16535 3.19977 3.41448 3.48930 3.51184 3.85074 3.89258 3.96417 4.12737 4.26657 4.39826 4.44693 4.54581 4.76673 4.99051 5.05515 5.19591 5.27402 5.40044 5.48311 5.51604 5.54535 5.69824 5.72248 5.93113 5.94246 6.17463 6.21765 6.33444 6.45732 6.54535 6.69876 6.73586 6.86393 7.01168 7.03805 7.31815 7.45661 7.60813 7.75629 7.85780 7.90333 8.50413 8.52198 9.27129 9.90595 10.47644 11.35903 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.002593 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.240677 B =10794.745834 C =11284.763478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.151 3.849 13 N -0.706 5.706 14 C 0.558 3.442 15 O -0.493 6.493 16 C 0.149 3.851 17 N -0.445 5.445 18 C 0.076 3.924 19 C -0.127 4.127 20 C -0.085 4.085 21 C -0.066 4.066 22 C -0.155 4.155 23 C 0.131 3.869 24 N -0.417 5.417 25 C 0.105 3.895 26 C -0.138 4.138 27 C 0.149 3.851 28 H 0.253 0.747 29 H 0.089 0.911 30 H 0.021 0.979 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.403 0.597 35 H 0.166 0.834 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.020 0.980 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 -22.696 16.531 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.048 3.952 13 N -0.357 5.357 14 C 0.340 3.660 15 O -0.365 6.365 16 C -0.004 4.004 17 N -0.158 5.158 18 C -0.070 4.070 19 C -0.148 4.148 20 C -0.092 4.092 21 C -0.092 4.092 22 C -0.176 4.176 23 C -0.043 4.043 24 N -0.125 5.125 25 C -0.020 4.020 26 C -0.178 4.178 27 C 0.022 3.978 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.238 0.762 35 H 0.183 0.817 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.038 0.962 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.178 -21.349 15.138 26.198 hybrid contribution 0.316 -0.395 1.520 1.602 sum -0.863 -21.744 16.658 27.405 Atomic orbital electron populations 1.70048 1.05246 1.25369 1.53875 1.25064 0.95280 0.98424 1.00951 0.86240 0.79339 0.84059 0.77229 1.20278 1.21762 1.21615 1.19213 0.92534 0.84791 1.41615 0.91627 1.44112 1.35930 1.01538 1.49992 1.20747 0.88670 0.98028 0.87769 1.22573 1.00521 0.95095 1.00480 1.21089 0.98844 0.88575 0.86672 1.46191 1.09382 1.43643 1.36523 1.17587 0.85659 0.80771 0.81935 1.90879 1.21778 1.62341 1.61504 1.21734 0.87218 0.95659 0.95805 1.67380 1.21492 1.14528 1.12396 1.22596 1.00253 0.92505 0.91689 1.22368 0.91732 1.00157 1.00528 1.18985 0.95321 0.97872 0.97002 1.21411 0.91749 0.97599 0.98431 1.22145 0.98250 0.99079 0.98110 1.23377 0.98930 0.90759 0.91257 1.68345 0.97930 1.20834 1.25389 1.19513 0.92766 0.95538 0.94191 1.22326 0.96714 0.99749 0.99016 1.20839 0.97976 0.86706 0.92311 0.93676 0.89323 0.96092 0.92666 0.92773 0.89922 0.76205 0.81656 0.83673 0.83765 0.83888 0.81660 0.92569 0.91763 0.96189 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 11.20 55.49 0.62 -26.19 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.25 -7.01 9.58 -15.06 -0.14 -7.16 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.20 3.00 -172.33 -0.52 -15.72 16 10 C 0.17 4.38 5.30 -3.71 -0.02 4.36 16 11 C -0.15 -3.09 5.66 -26.60 -0.15 -3.24 16 12 C 0.15 2.83 2.41 -67.87 -0.16 2.67 16 13 N -0.71 -11.59 5.07 -54.68 -0.28 -11.87 16 14 C 0.56 9.82 7.77 -12.30 -0.10 9.72 16 15 O -0.49 -10.24 14.87 5.33 0.08 -10.16 16 16 C 0.15 2.22 6.81 -82.54 -0.56 1.66 16 17 N -0.45 -5.54 9.48 -9.55 -0.09 -5.63 16 18 C 0.08 0.67 11.12 -17.65 -0.20 0.47 16 19 C -0.13 -0.97 9.93 -38.94 -0.39 -1.35 16 20 C -0.08 -0.84 5.75 -106.79 -0.61 -1.46 16 21 C -0.07 -0.46 9.94 -39.25 -0.39 -0.85 16 22 C -0.15 -1.05 10.03 -39.73 -0.40 -1.45 16 23 C 0.13 1.29 11.14 -17.39 -0.19 1.10 16 24 N -0.42 -6.08 8.49 -10.75 -0.09 -6.17 16 25 C 0.10 1.46 6.61 -84.62 -0.56 0.90 16 26 C -0.14 -2.44 5.55 -26.62 -0.15 -2.59 16 27 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.09 2.48 6.06 -51.93 -0.31 2.16 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 34 H 0.40 5.79 7.94 -40.82 -0.32 5.47 16 35 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -35.20 356.92 -9.70 -44.90 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.64 Total: 2.57 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -4.13 Total: 5.88 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -0.35 Total: -65.57 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.20 -9.70 -44.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932218516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.886 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds