Wall clock time and date at job start Tue Mar 31 2020 14:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46505 * 109.45150 * 181.24130 * 12 11 10 14 14 C 1.34778 * 119.99485 * 84.78885 * 13 12 11 15 15 O 1.21546 * 120.00451 * 0.02562 * 14 13 12 16 16 C 1.47901 * 119.99640 * 179.97438 * 14 13 12 17 17 N 1.32135 * 120.03319 * 359.72868 * 16 14 13 18 18 C 1.31981 * 122.76980 * 179.69883 * 17 16 14 19 19 C 1.37781 * 121.72642 * 0.58350 * 18 17 16 20 20 C 1.40388 * 118.72586 * 359.71924 * 19 18 17 21 21 C 1.40646 * 122.27975 * 180.02562 * 20 19 18 22 22 C 1.36644 * 117.95364 * 179.97438 * 21 20 19 23 23 C 1.39393 * 119.92278 * 359.97438 * 22 21 20 24 24 N 1.31200 * 121.85824 * 0.02562 * 23 22 21 25 25 C 1.33258 * 121.21964 * 359.97438 * 24 23 22 26 26 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 27 27 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 28 28 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 30 30 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 31 31 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 32 32 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 33 33 H 1.08990 * 109.33376 * 301.13470 * 12 11 10 34 34 H 0.96997 * 120.00106 * 264.79224 * 13 12 11 35 35 H 1.07991 * 119.14051 * 180.32986 * 18 17 16 36 36 H 1.07992 * 120.63853 * 179.70109 * 19 18 17 37 37 H 1.07996 * 121.02138 * 359.95702 * 21 20 19 38 38 H 1.07998 * 120.03785 * 179.97438 * 22 21 20 39 39 H 1.08009 * 119.07154 * 179.97438 * 23 22 21 40 40 H 1.09003 * 109.49897 * 178.74799 * 26 12 11 41 41 H 1.09004 * 109.50093 * 58.65268 * 26 12 11 42 42 H 1.09001 * 109.58688 * 246.20238 * 27 9 7 43 43 H 1.08996 * 109.58570 * 6.47946 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0399 -5.6476 2.9308 14 6 -0.0050 -6.2695 3.5121 15 8 -1.1361 -6.0453 3.1279 16 6 0.2249 -7.2258 4.6167 17 7 1.4548 -7.4749 5.0306 18 6 1.7214 -8.3130 6.0146 19 6 0.7238 -8.9985 6.6728 20 6 -0.6087 -8.7891 6.2837 21 6 -1.6849 -9.4485 6.9042 22 6 -2.9467 -9.1780 6.4550 23 6 -3.1343 -8.2719 5.4125 24 7 -2.1265 -7.6597 4.8373 25 6 -0.8714 -7.8787 5.2278 26 6 2.0675 -4.6173 0.9650 27 6 1.8138 -3.6528 -0.1979 28 1 -0.4850 0.8400 -0.0004 29 1 0.0995 -1.3342 1.6688 30 1 -0.6774 -2.6380 0.7364 31 1 1.3429 -2.9691 3.0021 32 1 -0.3879 -3.3839 3.0520 33 1 -0.0281 -5.0406 1.2310 34 1 1.9426 -5.8267 3.2372 35 1 2.7487 -8.4687 6.3089 36 1 0.9623 -9.6838 7.4726 37 1 -1.5190 -10.1472 7.7108 38 1 -3.7976 -9.6657 6.9071 39 1 -4.1376 -8.0686 5.0680 40 1 2.3043 -5.6062 0.5724 41 1 2.9025 -4.2536 1.5638 42 1 1.0401 -4.0605 -0.8485 43 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932218516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:24 Heat of formation + Delta-G solvation = 36.906484 kcal Electronic energy + Delta-G solvation = -26874.099968 eV Core-core repulsion = 23112.044290 eV Total energy + Delta-G solvation = -3762.055678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34856 -40.71861 -39.12928 -38.76229 -36.00895 -34.76165 -33.91406 -32.51868 -31.99845 -31.58810 -30.88928 -27.27178 -26.28229 -25.11182 -24.69589 -23.93150 -23.32777 -21.61802 -21.06503 -19.76244 -18.98103 -18.60435 -18.45472 -17.28116 -17.12091 -16.67905 -16.45211 -15.76475 -15.67654 -15.41308 -15.34972 -15.28810 -15.14654 -14.79446 -14.31898 -14.21294 -14.08376 -13.99915 -13.70125 -13.20737 -13.12861 -13.04202 -12.67668 -12.59140 -12.14476 -12.03300 -11.88006 -11.82104 -11.55394 -11.46203 -11.24313 -10.96804 -10.59436 -10.37988 -10.18732 -10.02740 -9.46685 -8.72268 -7.87490 -5.34313 -1.11714 -0.33706 0.64536 1.46752 1.48264 1.59528 1.64881 2.00933 2.17666 2.51427 3.03410 3.05759 3.21357 3.28309 3.42934 3.63777 3.66521 3.73272 3.84841 3.93936 4.05112 4.23452 4.29249 4.31409 4.44959 4.47866 4.58044 4.64440 4.64919 4.77564 4.85391 4.95118 5.01722 5.05320 5.10157 5.11263 5.29381 5.34458 5.43875 5.52835 5.62044 5.63578 5.67940 6.38247 6.44083 6.67345 6.95122 7.12519 7.23958 7.83104 8.36884 9.19981 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.002593 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.240677 B =10794.745834 C =11284.763478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.260 4.260 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.186 3.814 11 C -0.129 4.129 12 C 0.162 3.838 13 N -0.697 5.697 14 C 0.555 3.445 15 O -0.540 6.540 16 C 0.098 3.902 17 N -0.449 5.449 18 C 0.055 3.945 19 C -0.088 4.088 20 C -0.105 4.105 21 C -0.049 4.049 22 C -0.153 4.153 23 C 0.126 3.874 24 N -0.489 5.489 25 C 0.081 3.919 26 C -0.121 4.121 27 C 0.143 3.857 28 H 0.249 0.751 29 H 0.056 0.944 30 H -0.010 1.010 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.415 0.585 35 H 0.204 0.796 36 H 0.198 0.802 37 H 0.194 0.806 38 H 0.186 0.814 39 H 0.179 0.821 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.013 0.987 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 -25.982 19.674 32.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.390 4.390 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.059 3.941 11 C -0.170 4.170 12 C 0.058 3.942 13 N -0.349 5.349 14 C 0.340 3.660 15 O -0.415 6.415 16 C -0.053 4.053 17 N -0.162 5.162 18 C -0.092 4.092 19 C -0.108 4.108 20 C -0.113 4.113 21 C -0.074 4.074 22 C -0.174 4.174 23 C -0.047 4.047 24 N -0.198 5.198 25 C -0.043 4.043 26 C -0.160 4.160 27 C 0.017 3.983 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.008 0.992 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.252 0.748 35 H 0.221 0.779 36 H 0.215 0.785 37 H 0.211 0.789 38 H 0.203 0.797 39 H 0.196 0.804 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.031 0.969 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.908 -24.667 18.279 30.715 hybrid contribution -0.390 0.438 0.664 0.886 sum 0.518 -24.229 18.943 30.760 Atomic orbital electron populations 1.70222 1.06942 1.25815 1.55535 1.25910 0.96041 1.01884 1.01266 0.85155 0.78782 0.79558 0.76635 1.18561 1.21921 1.21935 1.19610 0.93041 0.85732 1.40659 0.90766 1.44354 1.35682 1.02748 1.50501 1.20429 0.87921 0.97127 0.88632 1.22310 1.00101 0.95873 0.98678 1.20730 0.98800 0.87442 0.87223 1.45931 1.10016 1.43025 1.35897 1.18141 0.84919 0.80701 0.82225 1.90830 1.23455 1.64036 1.63171 1.21146 0.88936 0.98017 0.97223 1.67257 1.20439 1.15129 1.13355 1.23308 1.02520 0.92241 0.91151 1.22982 0.90043 0.98217 0.99532 1.19384 0.97632 0.97761 0.96511 1.22004 0.90556 0.96647 0.98236 1.22521 1.00034 0.98011 0.96825 1.23885 0.98690 0.90485 0.91617 1.68253 0.99286 1.23913 1.28313 1.19688 0.92299 0.96685 0.95596 1.22133 0.96003 1.00470 0.97408 1.21034 0.98032 0.85495 0.93729 0.94170 0.92582 0.99169 0.92207 0.93936 0.92340 0.74776 0.77936 0.78457 0.78903 0.79696 0.80424 0.89208 0.90687 0.96919 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.39 11.20 21.65 0.24 -58.15 16 2 C -0.06 -3.25 4.92 84.86 0.42 -2.83 16 3 Si 0.97 46.18 29.59 68.60 2.03 48.21 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.26 -14.71 9.58 84.03 0.81 -13.91 16 8 H 0.07 4.00 7.89 -2.91 -0.02 3.98 16 9 N -0.61 -32.19 3.00 -699.11 -2.09 -34.28 16 10 C 0.19 9.94 5.30 86.36 0.46 10.40 16 11 C -0.13 -5.77 5.66 30.68 0.17 -5.60 16 12 C 0.16 6.31 2.41 45.03 0.11 6.42 16 13 N -0.70 -23.63 5.07 -445.18 -2.26 -25.89 16 14 C 0.56 20.84 7.77 86.80 0.67 21.51 16 15 O -0.54 -24.49 14.87 -3.86 -0.06 -24.54 16 16 C 0.10 3.00 6.81 42.46 0.29 3.29 16 17 N -0.45 -10.78 9.48 -184.13 -1.75 -12.52 16 18 C 0.06 0.80 11.12 84.56 0.94 1.74 16 19 C -0.09 -0.92 9.93 22.69 0.23 -0.69 16 20 C -0.11 -1.80 5.75 -21.27 -0.12 -1.92 16 21 C -0.05 -0.46 9.94 22.48 0.22 -0.23 16 22 C -0.15 -1.58 10.03 22.17 0.22 -1.35 16 23 C 0.13 2.48 11.14 85.07 0.95 3.43 16 24 N -0.49 -15.02 8.49 -187.91 -1.60 -16.61 16 25 C 0.08 2.30 6.61 40.63 0.27 2.56 16 26 C -0.12 -4.17 5.55 30.67 0.17 -4.00 16 27 C 0.14 6.11 6.52 86.36 0.56 6.68 16 28 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.06 3.35 6.06 -2.38 -0.01 3.33 16 30 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 32 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.06 2.58 7.58 -2.39 -0.02 2.56 16 34 H 0.41 11.90 7.94 -92.71 -0.74 11.16 16 35 H 0.20 1.22 8.06 -2.92 -0.02 1.20 16 36 H 0.20 -0.03 8.06 -2.91 -0.02 -0.05 16 37 H 0.19 -0.11 8.06 -2.91 -0.02 -0.14 16 38 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 39 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 2.84 7.93 -2.39 -0.02 2.82 16 Total: -1.00 -85.46 356.92 1.19 -84.27 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.31 Total: 14.03 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: 6.37 Total: 25.48 kcal Atomic # 7 Polarization: -140.01 SS G_CDS: -7.45 Total: -147.46 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.06 Total: -24.54 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -85.46 1.19 -84.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932218516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.177 kcal (2) G-P(sol) polarization free energy of solvation -85.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds