Wall clock time and date at job start Tue Mar 31 2020 15:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99900 * 2 1 4 4 H 1.48497 * 109.47242 * 269.99838 * 3 2 1 5 5 H 1.48505 * 109.47219 * 30.00098 * 3 2 1 6 6 H 1.48508 * 109.46754 * 149.99638 * 3 2 1 7 7 C 1.38811 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00023 * 163.09209 * 7 2 1 9 9 N 1.36941 * 119.99793 * 343.09322 * 7 2 1 10 10 C 1.46922 * 120.63096 * 331.78003 * 9 7 2 11 11 C 1.53197 * 108.89577 * 233.52072 * 10 9 7 12 12 C 1.53080 * 109.28753 * 305.57900 * 11 10 9 13 13 N 1.46504 * 109.44497 * 181.24190 * 12 11 10 14 14 C 1.34774 * 119.99837 * 84.79243 * 13 12 11 15 15 O 1.21541 * 120.00513 * 359.97438 * 14 13 12 16 16 C 1.47916 * 119.99625 * 179.97438 * 14 13 12 17 17 N 1.32367 * 120.64007 * 5.76064 * 16 14 13 18 18 N 1.28101 * 123.18393 * 180.02562 * 17 16 14 19 19 C 1.31799 * 123.49302 * 0.02562 * 18 17 16 20 20 C 1.40400 * 119.13898 * 0.02562 * 19 18 17 21 21 C 1.40238 * 122.73886 * 179.97438 * 20 19 18 22 22 C 1.36261 * 119.36537 * 179.19439 * 21 20 19 23 23 C 1.39381 * 121.07620 * 0.78089 * 22 21 20 24 24 C 1.36368 * 121.08451 * 359.49137 * 23 22 21 25 25 C 1.39832 * 119.42160 * 359.97438 * 24 23 22 26 26 C 1.53035 * 109.66225 * 61.15593 * 12 11 10 27 27 C 1.46925 * 120.62670 * 151.76265 * 9 7 2 28 28 H 0.97004 * 119.99926 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58610 * 353.37868 * 10 9 7 30 30 H 1.08993 * 109.58716 * 113.65830 * 10 9 7 31 31 H 1.09000 * 109.49580 * 65.38589 * 11 10 9 32 32 H 1.09000 * 109.49836 * 185.48851 * 11 10 9 33 33 H 1.08991 * 109.33590 * 301.12720 * 12 11 10 34 34 H 0.97005 * 120.00040 * 264.78620 * 13 12 11 35 35 H 1.07995 * 120.42493 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.31386 * 359.97438 * 21 20 19 37 37 H 1.08004 * 119.46141 * 180.24452 * 22 21 20 38 38 H 1.07993 * 119.45821 * 179.46595 * 23 22 21 39 39 H 1.07995 * 120.28590 * 179.97438 * 24 23 22 40 40 H 1.08998 * 109.49911 * 178.74583 * 26 12 11 41 41 H 1.09001 * 109.49710 * 58.64187 * 26 12 11 42 42 H 1.09003 * 109.58250 * 246.19371 * 27 9 7 43 43 H 1.08994 * 109.59238 * 6.48115 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2715 9 7 1.3699 -2.3623 0.3460 10 6 0.2265 -2.3402 1.2684 11 6 0.4948 -3.3206 2.4146 12 6 0.8121 -4.7014 1.8350 13 7 1.0402 -5.6489 2.9290 14 6 -0.0045 -6.2709 3.5104 15 8 -1.1359 -6.0456 3.1276 16 6 0.2258 -7.2279 4.6145 17 7 1.4382 -7.3984 5.1175 18 7 1.6929 -8.2135 6.0724 19 6 0.7775 -8.9647 6.6510 20 6 -0.5531 -8.8817 6.2109 21 6 -1.5866 -9.6460 6.7718 22 6 -2.8572 -9.4985 6.3022 23 6 -3.1424 -8.6133 5.2640 24 6 -2.1606 -7.8592 4.6921 25 6 -0.8466 -7.9760 5.1558 26 6 2.0670 -4.6179 0.9630 27 6 1.8130 -3.6527 -0.1992 28 1 -0.4850 0.8401 0.0004 29 1 0.1002 -1.3346 1.6697 30 1 -0.6774 -2.6377 0.7371 31 1 1.3440 -2.9705 3.0015 32 1 -0.3869 -3.3850 3.0521 33 1 -0.0286 -5.0408 1.2301 34 1 1.9431 -5.8285 3.2347 35 1 1.0475 -9.6354 7.4533 36 1 -1.3795 -10.3355 7.5768 37 1 -3.6550 -10.0834 6.7358 38 1 -4.1574 -8.5235 4.9064 39 1 -2.3960 -7.1776 3.8882 40 1 2.3032 -5.6066 0.5698 41 1 2.9024 -4.2546 1.5616 42 1 1.0387 -4.0597 -0.8496 43 1 2.7320 -3.5128 -0.7683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932218531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:05 Heat of formation + Delta-G solvation = 65.941021 kcal Electronic energy + Delta-G solvation = -26874.706881 eV Core-core repulsion = 23113.910235 eV Total energy + Delta-G solvation = -3760.796646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.78785 -39.62068 -38.36500 -37.39432 -34.55557 -33.71485 -32.19940 -32.13587 -30.80214 -30.02175 -29.41072 -26.25840 -24.85428 -24.61055 -23.27947 -22.28294 -21.97735 -20.78030 -19.49104 -18.71514 -18.42126 -17.62026 -16.77734 -16.36680 -15.94268 -15.66844 -15.03636 -14.96129 -14.66354 -14.42664 -14.26586 -13.88939 -13.61208 -13.50163 -12.99017 -12.93933 -12.68706 -12.62601 -12.41031 -11.94835 -11.72075 -11.48858 -11.11562 -10.98284 -10.87322 -10.70232 -10.40273 -10.25891 -10.08182 -10.06673 -9.83651 -9.76739 -9.74660 -9.50974 -8.92291 -8.72365 -8.42480 -6.67636 -5.77919 -3.20794 -0.37259 0.23832 1.24913 2.35252 2.91296 2.96632 3.38791 3.45907 3.48315 3.62695 3.66876 3.99060 4.13333 4.25499 4.34845 4.50663 4.65995 4.73487 4.83751 5.10709 5.25346 5.29626 5.37390 5.41782 5.45408 5.56128 5.60858 5.80964 5.81519 5.96463 6.00525 6.07799 6.23670 6.26870 6.40282 6.43523 6.58554 6.65796 6.76156 6.85742 6.93506 7.36807 7.54253 7.68356 7.80833 8.14669 8.40020 8.46012 9.21836 9.85057 10.41593 11.30762 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024788 B = 0.002570 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.285047 B =10893.490222 C =11353.716001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.148 3.852 13 N -0.695 5.695 14 C 0.574 3.426 15 O -0.526 6.526 16 C 0.075 3.925 17 N -0.231 5.231 18 N -0.265 5.265 19 C 0.099 3.901 20 C -0.086 4.086 21 C -0.099 4.099 22 C -0.095 4.095 23 C -0.103 4.103 24 C -0.088 4.088 25 C -0.048 4.048 26 C -0.140 4.140 27 C 0.149 3.851 28 H 0.254 0.746 29 H 0.090 0.910 30 H 0.021 0.979 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.408 0.592 35 H 0.180 0.820 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.177 0.823 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 -21.639 13.892 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.188 4.188 12 C 0.046 3.954 13 N -0.344 5.344 14 C 0.356 3.644 15 O -0.403 6.403 16 C -0.083 4.083 17 N -0.068 5.068 18 N -0.096 5.096 19 C -0.075 4.075 20 C -0.094 4.094 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.107 4.107 25 C -0.056 4.056 26 C -0.180 4.180 27 C 0.022 3.978 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.243 0.757 35 H 0.197 0.803 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.194 0.806 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.157 -20.802 13.490 24.994 hybrid contribution -0.673 0.220 0.466 0.847 sum -3.830 -20.583 13.956 25.161 Atomic orbital electron populations 1.70032 1.05273 1.25551 1.53724 1.25061 0.95283 0.98458 1.00811 0.86313 0.79179 0.83665 0.77697 1.21385 1.21571 1.20476 1.19162 0.92540 0.84768 1.41881 0.91642 1.44099 1.35955 1.01572 1.49891 1.20747 0.88715 0.98033 0.87701 1.22599 1.00660 0.94897 1.00616 1.21213 0.99193 0.88553 0.86488 1.46269 1.09493 1.42643 1.35947 1.17451 0.85542 0.80090 0.81300 1.90633 1.21935 1.64232 1.63459 1.23138 0.91272 0.96736 0.97163 1.72738 1.18327 1.10960 1.04761 1.72650 1.30170 1.02852 1.03964 1.24812 0.89065 0.95972 0.97700 1.18922 0.95766 0.97781 0.96898 1.20941 0.92043 0.98888 1.00005 1.21187 0.96895 0.97394 0.95931 1.21308 1.00362 0.95058 0.95489 1.22098 0.90392 0.98231 0.99981 1.18642 0.95324 0.95887 0.95737 1.22353 0.96601 0.99951 0.99066 1.20840 0.98092 0.86657 0.92223 0.93593 0.89218 0.96067 0.92428 0.92725 0.89618 0.75680 0.80256 0.84205 0.84910 0.84695 0.80650 0.92427 0.91553 0.96151 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 11.20 55.49 0.62 -25.66 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.75 2.99 -172.32 -0.52 -15.27 16 10 C 0.17 4.22 5.30 -3.71 -0.02 4.20 16 11 C -0.15 -2.94 5.66 -26.59 -0.15 -3.09 16 12 C 0.15 2.59 2.41 -67.87 -0.16 2.42 16 13 N -0.69 -10.60 5.07 -54.67 -0.28 -10.87 16 14 C 0.57 8.99 7.75 -12.30 -0.10 8.90 16 15 O -0.53 -9.17 13.25 5.33 0.07 -9.09 16 16 C 0.07 1.05 6.90 -82.42 -0.57 0.49 16 17 N -0.23 -3.28 10.70 33.56 0.36 -2.92 16 18 N -0.26 -3.37 11.42 30.90 0.35 -3.01 16 19 C 0.10 0.91 11.20 -16.75 -0.19 0.72 16 20 C -0.09 -0.84 5.75 -106.85 -0.61 -1.45 16 21 C -0.10 -0.65 9.84 -39.54 -0.39 -1.04 16 22 C -0.09 -0.60 9.95 -39.87 -0.40 -1.00 16 23 C -0.10 -0.84 9.95 -39.83 -0.40 -1.23 16 24 C -0.09 -1.00 9.27 -39.66 -0.37 -1.37 16 25 C -0.05 -0.60 5.77 -106.57 -0.61 -1.21 16 26 C -0.14 -2.35 5.55 -26.61 -0.15 -2.50 16 27 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 34 H 0.41 5.63 8.00 -40.82 -0.33 5.31 16 35 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 37 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.18 2.28 5.12 -52.49 -0.27 2.01 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -32.37 353.81 -8.94 -41.32 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.49 Total: 3.73 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -4.37 Total: -0.24 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.54 Total: -57.74 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.09 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.37 -8.94 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932218531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.259 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds