Wall clock time and date at job start Tue Mar 31 2020 15:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99900 * 2 1 4 4 H 1.48497 * 109.47242 * 269.99838 * 3 2 1 5 5 H 1.48505 * 109.47219 * 30.00098 * 3 2 1 6 6 H 1.48508 * 109.46754 * 149.99638 * 3 2 1 7 7 C 1.38811 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00023 * 163.09209 * 7 2 1 9 9 N 1.36941 * 119.99793 * 343.09322 * 7 2 1 10 10 C 1.46922 * 120.63096 * 331.78003 * 9 7 2 11 11 C 1.53197 * 108.89577 * 233.52072 * 10 9 7 12 12 C 1.53080 * 109.28753 * 305.57900 * 11 10 9 13 13 N 1.46504 * 109.44497 * 181.24190 * 12 11 10 14 14 C 1.34774 * 119.99837 * 84.79243 * 13 12 11 15 15 O 1.21541 * 120.00513 * 359.97438 * 14 13 12 16 16 C 1.47916 * 119.99625 * 179.97438 * 14 13 12 17 17 N 1.32367 * 120.64007 * 5.76064 * 16 14 13 18 18 N 1.28101 * 123.18393 * 180.02562 * 17 16 14 19 19 C 1.31799 * 123.49302 * 0.02562 * 18 17 16 20 20 C 1.40400 * 119.13898 * 0.02562 * 19 18 17 21 21 C 1.40238 * 122.73886 * 179.97438 * 20 19 18 22 22 C 1.36261 * 119.36537 * 179.19439 * 21 20 19 23 23 C 1.39381 * 121.07620 * 0.78089 * 22 21 20 24 24 C 1.36368 * 121.08451 * 359.49137 * 23 22 21 25 25 C 1.39832 * 119.42160 * 359.97438 * 24 23 22 26 26 C 1.53035 * 109.66225 * 61.15593 * 12 11 10 27 27 C 1.46925 * 120.62670 * 151.76265 * 9 7 2 28 28 H 0.97004 * 119.99926 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58610 * 353.37868 * 10 9 7 30 30 H 1.08993 * 109.58716 * 113.65830 * 10 9 7 31 31 H 1.09000 * 109.49580 * 65.38589 * 11 10 9 32 32 H 1.09000 * 109.49836 * 185.48851 * 11 10 9 33 33 H 1.08991 * 109.33590 * 301.12720 * 12 11 10 34 34 H 0.97005 * 120.00040 * 264.78620 * 13 12 11 35 35 H 1.07995 * 120.42493 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.31386 * 359.97438 * 21 20 19 37 37 H 1.08004 * 119.46141 * 180.24452 * 22 21 20 38 38 H 1.07993 * 119.45821 * 179.46595 * 23 22 21 39 39 H 1.07995 * 120.28590 * 179.97438 * 24 23 22 40 40 H 1.08998 * 109.49911 * 178.74583 * 26 12 11 41 41 H 1.09001 * 109.49710 * 58.64187 * 26 12 11 42 42 H 1.09003 * 109.58250 * 246.19371 * 27 9 7 43 43 H 1.08994 * 109.59238 * 6.48115 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2715 9 7 1.3699 -2.3623 0.3460 10 6 0.2265 -2.3402 1.2684 11 6 0.4948 -3.3206 2.4146 12 6 0.8121 -4.7014 1.8350 13 7 1.0402 -5.6489 2.9290 14 6 -0.0045 -6.2709 3.5104 15 8 -1.1359 -6.0456 3.1276 16 6 0.2258 -7.2279 4.6145 17 7 1.4382 -7.3984 5.1175 18 7 1.6929 -8.2135 6.0724 19 6 0.7775 -8.9647 6.6510 20 6 -0.5531 -8.8817 6.2109 21 6 -1.5866 -9.6460 6.7718 22 6 -2.8572 -9.4985 6.3022 23 6 -3.1424 -8.6133 5.2640 24 6 -2.1606 -7.8592 4.6921 25 6 -0.8466 -7.9760 5.1558 26 6 2.0670 -4.6179 0.9630 27 6 1.8130 -3.6527 -0.1992 28 1 -0.4850 0.8401 0.0004 29 1 0.1002 -1.3346 1.6697 30 1 -0.6774 -2.6377 0.7371 31 1 1.3440 -2.9705 3.0015 32 1 -0.3869 -3.3850 3.0521 33 1 -0.0286 -5.0408 1.2301 34 1 1.9431 -5.8285 3.2347 35 1 1.0475 -9.6354 7.4533 36 1 -1.3795 -10.3355 7.5768 37 1 -3.6550 -10.0834 6.7358 38 1 -4.1574 -8.5235 4.9064 39 1 -2.3960 -7.1776 3.8882 40 1 2.3032 -5.6066 0.5698 41 1 2.9024 -4.2546 1.5616 42 1 1.0387 -4.0597 -0.8496 43 1 2.7320 -3.5128 -0.7683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932218531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:04 Heat of formation + Delta-G solvation = 44.552559 kcal Electronic energy + Delta-G solvation = -26875.634354 eV Core-core repulsion = 23113.910235 eV Total energy + Delta-G solvation = -3761.724119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.62178 -40.87134 -39.11576 -38.96857 -36.14824 -34.61541 -33.91037 -32.85942 -31.94622 -31.58257 -30.95756 -27.49863 -26.40319 -25.35976 -24.31586 -23.95470 -23.35262 -22.00555 -21.10649 -19.70173 -19.21425 -18.85054 -18.32000 -17.42499 -16.97428 -16.79214 -16.70739 -15.98731 -15.66175 -15.60400 -15.42257 -15.37074 -15.01935 -14.81999 -14.50405 -14.32752 -14.09512 -13.63949 -13.31195 -13.21640 -13.03909 -12.75358 -12.59203 -12.58157 -12.53266 -12.15415 -12.09358 -11.86995 -11.74165 -11.58603 -11.41100 -10.91255 -10.80808 -10.59253 -10.42764 -10.16067 -9.54857 -8.71913 -7.88385 -5.34358 -1.16077 -0.49398 0.51889 1.44215 1.46679 1.48569 1.58283 1.81078 2.02786 2.51141 2.72379 2.85743 3.24944 3.28205 3.37220 3.56813 3.64367 3.68547 3.80830 3.92294 4.01650 4.18238 4.22538 4.28204 4.42717 4.43950 4.57276 4.63409 4.71927 4.77273 4.81708 4.95629 5.00424 5.02749 5.09980 5.18470 5.28983 5.30658 5.33571 5.43606 5.49348 5.63371 5.68333 5.75116 6.31863 6.38178 6.95319 7.12843 7.53850 7.83395 8.36052 9.18844 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024788 B = 0.002570 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.285047 B =10893.490222 C =11353.716001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.262 4.262 8 H 0.072 0.928 9 N -0.610 5.610 10 C 0.185 3.815 11 C -0.132 4.132 12 C 0.160 3.840 13 N -0.689 5.689 14 C 0.573 3.427 15 O -0.551 6.551 16 C 0.049 3.951 17 N -0.246 5.246 18 N -0.302 5.302 19 C 0.121 3.879 20 C -0.101 4.101 21 C -0.079 4.079 22 C -0.093 4.093 23 C -0.087 4.087 24 C -0.127 4.127 25 C -0.069 4.069 26 C -0.124 4.124 27 C 0.144 3.856 28 H 0.250 0.750 29 H 0.056 0.944 30 H -0.005 1.005 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.416 0.584 35 H 0.230 0.770 36 H 0.187 0.813 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.017 0.983 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 -24.856 16.436 30.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.090 0.910 9 N -0.333 5.333 10 C 0.058 3.942 11 C -0.172 4.172 12 C 0.056 3.944 13 N -0.339 5.339 14 C 0.357 3.643 15 O -0.429 6.429 16 C -0.109 4.109 17 N -0.082 5.082 18 N -0.134 5.134 19 C -0.052 4.052 20 C -0.109 4.109 21 C -0.098 4.098 22 C -0.112 4.112 23 C -0.107 4.107 24 C -0.147 4.147 25 C -0.076 4.076 26 C -0.164 4.164 27 C 0.018 3.982 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.013 0.987 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.254 0.746 35 H 0.246 0.754 36 H 0.204 0.796 37 H 0.192 0.808 38 H 0.173 0.827 39 H 0.165 0.835 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.668 -24.060 16.043 29.042 hybrid contribution -0.950 1.035 -0.234 1.424 sum -3.618 -23.025 15.810 28.164 Atomic orbital electron populations 1.70197 1.06813 1.25887 1.55393 1.25859 0.96029 1.01722 1.01230 0.85269 0.78069 0.79426 0.77634 1.20950 1.22107 1.19385 1.19543 0.92992 0.85837 1.40871 0.91018 1.44344 1.35812 1.02680 1.50498 1.20450 0.87991 0.97171 0.88580 1.22341 1.00398 0.95637 0.98815 1.20856 0.99188 0.87380 0.86931 1.46024 1.10057 1.42252 1.35518 1.17790 0.85014 0.80027 0.81470 1.90633 1.22869 1.65068 1.64330 1.22819 0.92418 0.97937 0.97746 1.72621 1.18413 1.11696 1.05462 1.72575 1.31549 1.04431 1.04863 1.25572 0.88272 0.94336 0.96980 1.19250 0.97054 0.97994 0.96564 1.21508 0.90959 0.97634 0.99695 1.21662 0.98155 0.96632 0.94743 1.21665 1.00441 0.93609 0.94935 1.21901 0.91337 1.00245 1.01185 1.18835 0.95091 0.96735 0.96973 1.22166 0.96061 1.00620 0.97513 1.21023 0.98104 0.85446 0.93655 0.94128 0.92593 0.98677 0.92402 0.93197 0.91130 0.74637 0.75382 0.79582 0.80787 0.82705 0.83467 0.89080 0.90950 0.96525 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.90 11.20 21.65 0.24 -56.66 16 2 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 3 Si 0.97 45.55 29.59 68.60 2.03 47.58 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.26 -14.57 9.58 84.03 0.81 -13.76 16 8 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 9 N -0.61 -31.21 2.99 -699.10 -2.09 -33.31 16 10 C 0.18 9.43 5.30 86.36 0.46 9.89 16 11 C -0.13 -5.49 5.66 30.69 0.17 -5.32 16 12 C 0.16 5.73 2.41 45.03 0.11 5.84 16 13 N -0.69 -21.53 5.07 -445.17 -2.26 -23.79 16 14 C 0.57 18.91 7.75 86.81 0.67 19.58 16 15 O -0.55 -20.62 13.25 -3.85 -0.05 -20.67 16 16 C 0.05 1.42 6.90 42.44 0.29 1.72 16 17 N -0.25 -7.01 10.70 -47.73 -0.51 -7.52 16 18 N -0.30 -7.32 11.42 -56.16 -0.64 -7.96 16 19 C 0.12 1.86 11.20 85.22 0.95 2.82 16 20 C -0.10 -1.69 5.75 -21.31 -0.12 -1.81 16 21 C -0.08 -0.64 9.84 22.30 0.22 -0.42 16 22 C -0.09 -0.74 9.95 22.08 0.22 -0.52 16 23 C -0.09 -1.24 9.95 22.11 0.22 -1.02 16 24 C -0.13 -2.94 9.27 22.22 0.21 -2.73 16 25 C -0.07 -1.70 5.77 -21.12 -0.12 -1.82 16 26 C -0.12 -4.08 5.55 30.67 0.17 -3.91 16 27 C 0.14 5.90 6.52 86.36 0.56 6.46 16 28 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.06 3.22 6.06 -2.38 -0.01 3.20 16 30 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 2.77 7.58 -2.39 -0.02 2.75 16 34 H 0.42 11.57 8.00 -92.70 -0.74 10.83 16 35 H 0.23 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.19 -0.18 8.06 -2.91 -0.02 -0.21 16 37 H 0.17 0.04 8.06 -2.91 -0.02 0.02 16 38 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.15 4.20 5.12 -2.91 -0.01 4.19 16 40 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 Total: -1.00 -76.11 353.81 2.26 -73.85 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.31 Total: 16.12 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 5.24 Total: 12.36 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -5.26 Total: -129.24 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -76.11 2.26 -73.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932218531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.400 kcal (2) G-P(sol) polarization free energy of solvation -76.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds