Wall clock time and date at job start Tue Mar 31 2020 15:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48508 * 109.47033 * 239.99692 * 3 2 1 5 5 H 1.48497 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47312 * 119.99751 * 3 2 1 7 7 C 1.38813 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99980 * 161.49894 * 7 2 1 9 9 N 1.36935 * 120.00018 * 341.50185 * 7 2 1 10 10 C 1.47229 * 121.32905 * 333.19219 * 9 7 2 11 11 C 1.52790 * 107.90618 * 115.79069 * 10 9 7 12 12 C 1.50598 * 110.91503 * 47.35117 * 11 10 9 13 13 C 1.38972 * 117.63559 * 160.06032 * 12 11 10 14 14 C 1.37909 * 120.58146 * 179.01283 * 13 12 11 15 15 C 1.38264 * 119.82626 * 0.33379 * 14 13 12 16 16 C 1.37956 * 119.71504 * 0.25798 * 15 14 13 17 17 C 1.37680 * 122.84842 * 340.08012 * 12 11 10 18 18 C 1.46688 * 121.32900 * 153.17100 * 9 7 2 19 19 H 1.09003 * 109.42997 * 344.47166 * 18 9 7 20 20 C 1.52997 * 109.39982 * 104.36313 * 18 9 7 21 21 N 1.46500 * 109.46892 * 305.19909 * 20 18 9 22 22 C 1.34782 * 119.99984 * 179.97438 * 21 20 18 23 23 O 1.21575 * 119.99671 * 0.02562 * 22 21 20 24 24 C 1.47711 * 120.00310 * 179.97438 * 22 21 20 25 25 C 1.41498 * 126.51624 * 179.71506 * 24 22 21 26 26 C 1.35367 * 105.50166 * 179.84471 * 25 24 22 27 27 N 1.35036 * 107.22786 * 0.41360 * 26 25 24 28 28 H 0.96999 * 124.88543 * 179.72592 * 27 26 25 29 29 N 1.28472 * 110.22805 * 359.72692 * 27 26 25 30 30 H 0.97004 * 120.00063 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.77282 * 235.39443 * 10 9 7 32 32 H 1.08997 * 109.77343 * 356.13911 * 10 9 7 33 33 H 1.08992 * 109.20365 * 167.88624 * 11 10 9 34 34 H 1.08999 * 109.20283 * 287.23142 * 11 10 9 35 35 H 1.08006 * 119.70958 * 359.28750 * 13 12 11 36 36 H 1.08000 * 120.08266 * 180.35521 * 14 13 12 37 37 H 1.08007 * 120.13756 * 180.24296 * 15 14 13 38 38 H 1.08004 * 119.74494 * 179.84141 * 16 15 14 39 39 H 1.09004 * 109.47171 * 65.19419 * 20 18 9 40 40 H 1.08992 * 109.47353 * 185.19888 * 20 18 9 41 41 H 0.96997 * 120.00744 * 359.97438 * 21 20 18 42 42 H 1.08000 * 127.25052 * 359.97438 * 25 24 22 43 43 H 1.07999 * 126.38927 * 180.13431 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0483 -1.2265 -0.2962 9 7 1.3785 -2.3573 0.3773 10 6 0.2343 -2.3369 1.3036 11 6 -0.9922 -2.8434 0.5462 12 6 -0.6733 -4.1056 -0.2109 13 6 -1.7369 -4.9144 -0.5928 14 6 -1.5158 -6.0738 -1.3061 15 6 -0.2251 -6.4405 -1.6396 16 6 0.8336 -5.6458 -1.2512 17 6 0.6124 -4.4793 -0.5317 18 6 1.8146 -3.6642 -0.1262 19 1 2.4642 -3.5216 -0.9898 20 6 2.5827 -4.4016 0.9725 21 7 3.6812 -3.5583 1.4504 22 6 4.4983 -4.0044 2.4251 23 8 4.3240 -5.1068 2.9072 24 6 5.6063 -3.1545 2.9067 25 6 6.5380 -3.4802 3.9206 26 6 7.3598 -2.4087 4.0145 27 7 6.9329 -1.4971 3.1144 28 1 7.3389 -0.6282 2.9695 29 7 5.9115 -1.9462 2.4776 30 1 -0.4850 0.8401 -0.0004 31 1 0.4370 -2.9875 2.1543 32 1 0.0595 -1.3189 1.6514 33 1 -1.7951 -3.0420 1.2561 34 1 -1.3185 -2.0795 -0.1595 35 1 -2.7458 -4.6302 -0.3325 36 1 -2.3488 -6.6935 -1.6037 37 1 -0.0465 -7.3455 -2.2015 38 1 1.8422 -5.9331 -1.5093 39 1 1.9090 -4.6242 1.8000 40 1 2.9863 -5.3315 0.5722 41 1 3.8206 -2.6789 1.0656 42 1 6.5850 -4.3925 4.4966 43 1 8.1977 -2.3009 4.6873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948893916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:29 Heat of formation + Delta-G solvation = 90.137550 kcal Electronic energy + Delta-G solvation = -27753.562891 eV Core-core repulsion = 23993.815485 eV Total energy + Delta-G solvation = -3759.747406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.51747 -39.53182 -38.64102 -36.22820 -34.07309 -32.31111 -32.14435 -31.54487 -30.60936 -29.84099 -28.59079 -26.97994 -24.64325 -23.20601 -22.50510 -21.94416 -21.59297 -21.08589 -19.63067 -18.68484 -18.40879 -17.03344 -16.41584 -15.86131 -15.64361 -15.28903 -15.21266 -14.51516 -14.40449 -14.13676 -13.81711 -13.66852 -13.61699 -13.32828 -12.95866 -12.60054 -12.50812 -12.30486 -12.15444 -11.66412 -11.20794 -11.09341 -11.04137 -10.82716 -10.79358 -10.66157 -10.42531 -10.08217 -9.84391 -9.72984 -9.48762 -9.35683 -9.17060 -8.55888 -8.42208 -8.21166 -7.87635 -6.79376 -5.88431 -3.31559 1.78816 1.91208 1.98543 2.20864 2.92207 3.33418 3.39494 3.40780 3.71051 3.80999 4.33610 4.40357 4.67552 4.84338 5.26700 5.28356 5.37802 5.42287 5.46719 5.49998 5.62238 5.68143 5.78854 5.87807 5.95094 6.02215 6.13338 6.27471 6.41082 6.43063 6.48609 6.59218 6.64155 6.76050 6.80994 6.96480 6.99546 7.02724 7.07978 7.38370 7.41490 7.57950 7.65471 7.73244 7.84577 8.21450 8.32255 8.71365 9.09140 9.71035 10.29773 11.18964 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009906 B = 0.005060 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.994986 B = 5532.145881 C = 7825.754991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.011 3.989 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.578 5.578 10 C 0.165 3.835 11 C -0.096 4.096 12 C -0.039 4.039 13 C -0.135 4.135 14 C -0.128 4.128 15 C -0.139 4.139 16 C -0.118 4.118 17 C -0.079 4.079 18 C 0.193 3.807 19 H 0.077 0.923 20 C 0.113 3.887 21 N -0.690 5.690 22 C 0.595 3.405 23 O -0.551 6.551 24 C -0.007 4.007 25 C -0.183 4.183 26 C -0.023 4.023 27 N -0.386 5.386 28 H 0.445 0.555 29 N -0.248 5.248 30 H 0.255 0.745 31 H 0.007 0.993 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.417 0.583 42 H 0.161 0.839 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.970 -5.554 3.622 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.189 4.189 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.299 5.299 10 C 0.039 3.961 11 C -0.135 4.135 12 C -0.039 4.039 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.158 4.158 16 C -0.137 4.137 17 C -0.081 4.081 18 C 0.084 3.916 19 H 0.095 0.905 20 C -0.013 4.013 21 N -0.341 5.341 22 C 0.379 3.621 23 O -0.428 6.428 24 C -0.169 4.169 25 C -0.211 4.211 26 C -0.167 4.167 27 N -0.100 5.100 28 H 0.289 0.711 29 N -0.085 5.085 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.256 0.744 42 H 0.178 0.822 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.354 -5.360 3.179 9.639 hybrid contribution 0.832 1.130 0.222 1.421 sum 8.186 -4.230 3.401 9.821 Atomic orbital electron populations 1.69960 1.05223 1.25661 1.52726 1.24968 0.95215 0.98309 1.00399 0.86376 0.78965 0.83320 0.78121 1.20931 1.21776 1.20963 1.19006 0.92891 0.84519 1.42008 0.91410 1.44108 1.36078 1.00055 1.49657 1.20792 0.85158 1.00766 0.89344 1.20995 0.99457 0.93786 0.99240 1.19866 0.91901 0.95825 0.96293 1.21190 0.98545 0.95393 1.00145 1.20908 0.96592 0.97308 0.99832 1.20874 0.93012 0.99905 1.01973 1.21098 0.98663 0.94813 0.99115 1.20079 0.95268 0.94893 0.97837 1.19615 0.91535 0.86467 0.93983 0.90461 1.21945 0.88022 0.92864 0.98478 1.45820 1.29413 1.21577 1.37333 1.16910 0.80535 0.84942 0.79751 1.90746 1.72898 1.20557 1.58623 1.22133 1.00768 0.93058 1.00948 1.21787 0.96669 1.00918 1.01712 1.22900 1.03435 0.91340 0.99042 1.43416 1.22132 1.16949 1.27485 0.71098 1.73711 1.03163 1.12156 1.19430 0.93505 0.97525 0.88740 0.93343 0.88091 0.86930 0.87098 0.86978 0.86733 0.91932 0.92215 0.74434 0.82169 0.80072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 10.14 55.49 0.56 -23.20 16 2 C 0.01 0.28 4.93 -17.43 -0.09 0.19 16 3 Si 0.90 20.62 29.59 -169.99 -5.03 15.59 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.37 8.72 -15.06 -0.13 -6.50 16 8 H 0.07 1.65 7.30 -52.49 -0.38 1.27 16 9 N -0.58 -13.29 2.30 -166.33 -0.38 -13.68 16 10 C 0.16 3.76 5.46 -3.75 -0.02 3.74 16 11 C -0.10 -2.03 5.77 -28.04 -0.16 -2.19 16 12 C -0.04 -0.76 5.76 -104.60 -0.60 -1.37 16 13 C -0.13 -2.32 9.59 -39.43 -0.38 -2.70 16 14 C -0.13 -1.98 10.04 -39.69 -0.40 -2.38 16 15 C -0.14 -2.14 10.05 -39.67 -0.40 -2.53 16 16 C -0.12 -1.99 9.35 -39.47 -0.37 -2.36 16 17 C -0.08 -1.53 5.16 -104.56 -0.54 -2.07 16 18 C 0.19 3.88 2.50 -68.93 -0.17 3.71 16 19 H 0.08 1.57 7.98 -51.93 -0.41 1.15 16 20 C 0.11 2.15 5.01 -4.04 -0.02 2.13 16 21 N -0.69 -13.23 5.38 -61.29 -0.33 -13.56 16 22 C 0.60 11.41 7.83 -12.39 -0.10 11.31 16 23 O -0.55 -11.67 16.93 5.30 0.09 -11.58 16 24 C -0.01 -0.12 7.13 -82.77 -0.59 -0.72 16 25 C -0.18 -2.42 10.81 -39.36 -0.43 -2.85 16 26 C -0.02 -0.22 12.02 -17.17 -0.21 -0.43 16 27 N -0.39 -4.21 6.83 30.47 0.21 -4.00 16 28 H 0.44 3.13 8.96 -190.44 -1.71 1.42 16 29 N -0.25 -3.88 11.92 33.42 0.40 -3.48 16 30 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.01 0.15 7.48 -51.93 -0.39 -0.24 16 32 H 0.09 2.39 5.94 -51.93 -0.31 2.08 16 33 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 34 H 0.10 2.41 7.13 -51.93 -0.37 2.04 16 35 H 0.11 1.74 8.05 -52.48 -0.42 1.32 16 36 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.11 1.69 8.05 -52.48 -0.42 1.27 16 39 H 0.06 1.28 7.55 -51.93 -0.39 0.89 16 40 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 41 H 0.42 8.28 6.40 -40.82 -0.26 8.02 16 42 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.18 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -30.94 356.09 -10.45 -41.39 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -6.73 Total: 12.17 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -4.60 Total: -5.01 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.46 Total: -57.92 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.94 -10.45 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948893916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.526 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds