Wall clock time and date at job start Tue Mar 31 2020 15:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48508 * 109.47033 * 239.99692 * 3 2 1 5 5 H 1.48497 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47312 * 119.99751 * 3 2 1 7 7 C 1.38813 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99980 * 161.49894 * 7 2 1 9 9 N 1.36935 * 120.00018 * 341.50185 * 7 2 1 10 10 C 1.47229 * 121.32905 * 333.19219 * 9 7 2 11 11 C 1.52790 * 107.90618 * 115.79069 * 10 9 7 12 12 C 1.50598 * 110.91503 * 47.35117 * 11 10 9 13 13 C 1.38972 * 117.63559 * 160.06032 * 12 11 10 14 14 C 1.37909 * 120.58146 * 179.01283 * 13 12 11 15 15 C 1.38264 * 119.82626 * 0.33379 * 14 13 12 16 16 C 1.37956 * 119.71504 * 0.25798 * 15 14 13 17 17 C 1.37680 * 122.84842 * 340.08012 * 12 11 10 18 18 C 1.46688 * 121.32900 * 153.17100 * 9 7 2 19 19 H 1.09003 * 109.42997 * 344.47166 * 18 9 7 20 20 C 1.52997 * 109.39982 * 104.36313 * 18 9 7 21 21 N 1.46500 * 109.46892 * 305.19909 * 20 18 9 22 22 C 1.34782 * 119.99984 * 179.97438 * 21 20 18 23 23 O 1.21575 * 119.99671 * 0.02562 * 22 21 20 24 24 C 1.47711 * 120.00310 * 179.97438 * 22 21 20 25 25 C 1.41498 * 126.51624 * 179.71506 * 24 22 21 26 26 C 1.35367 * 105.50166 * 179.84471 * 25 24 22 27 27 N 1.35036 * 107.22786 * 0.41360 * 26 25 24 28 28 H 0.96999 * 124.88543 * 179.72592 * 27 26 25 29 29 N 1.28472 * 110.22805 * 359.72692 * 27 26 25 30 30 H 0.97004 * 120.00063 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.77282 * 235.39443 * 10 9 7 32 32 H 1.08997 * 109.77343 * 356.13911 * 10 9 7 33 33 H 1.08992 * 109.20365 * 167.88624 * 11 10 9 34 34 H 1.08999 * 109.20283 * 287.23142 * 11 10 9 35 35 H 1.08006 * 119.70958 * 359.28750 * 13 12 11 36 36 H 1.08000 * 120.08266 * 180.35521 * 14 13 12 37 37 H 1.08007 * 120.13756 * 180.24296 * 15 14 13 38 38 H 1.08004 * 119.74494 * 179.84141 * 16 15 14 39 39 H 1.09004 * 109.47171 * 65.19419 * 20 18 9 40 40 H 1.08992 * 109.47353 * 185.19888 * 20 18 9 41 41 H 0.96997 * 120.00744 * 359.97438 * 21 20 18 42 42 H 1.08000 * 127.25052 * 359.97438 * 25 24 22 43 43 H 1.07999 * 126.38927 * 180.13431 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0483 -1.2265 -0.2962 9 7 1.3785 -2.3573 0.3773 10 6 0.2343 -2.3369 1.3036 11 6 -0.9922 -2.8434 0.5462 12 6 -0.6733 -4.1056 -0.2109 13 6 -1.7369 -4.9144 -0.5928 14 6 -1.5158 -6.0738 -1.3061 15 6 -0.2251 -6.4405 -1.6396 16 6 0.8336 -5.6458 -1.2512 17 6 0.6124 -4.4793 -0.5317 18 6 1.8146 -3.6642 -0.1262 19 1 2.4642 -3.5216 -0.9898 20 6 2.5827 -4.4016 0.9725 21 7 3.6812 -3.5583 1.4504 22 6 4.4983 -4.0044 2.4251 23 8 4.3240 -5.1068 2.9072 24 6 5.6063 -3.1545 2.9067 25 6 6.5380 -3.4802 3.9206 26 6 7.3598 -2.4087 4.0145 27 7 6.9329 -1.4971 3.1144 28 1 7.3389 -0.6282 2.9695 29 7 5.9115 -1.9462 2.4776 30 1 -0.4850 0.8401 -0.0004 31 1 0.4370 -2.9875 2.1543 32 1 0.0595 -1.3189 1.6514 33 1 -1.7951 -3.0420 1.2561 34 1 -1.3185 -2.0795 -0.1595 35 1 -2.7458 -4.6302 -0.3325 36 1 -2.3488 -6.6935 -1.6037 37 1 -0.0465 -7.3455 -2.2015 38 1 1.8422 -5.9331 -1.5093 39 1 1.9090 -4.6242 1.8000 40 1 2.9863 -5.3315 0.5722 41 1 3.8206 -2.6789 1.0656 42 1 6.5850 -4.3925 4.4966 43 1 8.1977 -2.3009 4.6873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948893916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:28 Heat of formation + Delta-G solvation = 70.583330 kcal Electronic energy + Delta-G solvation = -27754.410826 eV Core-core repulsion = 23993.815485 eV Total energy + Delta-G solvation = -3760.595341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.52952 -41.01795 -40.10918 -37.81518 -35.69935 -34.03850 -33.57343 -32.68600 -31.61823 -31.50710 -30.06729 -28.58711 -26.26507 -24.69831 -24.07951 -23.38955 -22.67792 -22.43138 -21.04464 -20.19503 -19.42688 -18.65558 -17.87179 -17.32025 -17.12707 -16.73176 -16.62953 -16.07948 -15.82290 -15.70135 -15.26772 -15.17741 -14.93817 -14.58790 -14.21030 -14.02230 -13.93957 -13.78907 -13.72504 -13.30285 -12.90298 -12.76474 -12.69508 -12.54426 -12.24115 -12.11554 -11.88688 -11.78790 -11.57233 -11.29281 -11.15630 -10.48266 -10.46840 -10.12517 -9.94514 -9.55118 -9.29808 -8.67406 -7.83882 -5.28301 0.57226 0.58933 0.63580 1.28229 1.48741 1.51176 1.56752 2.00318 2.38789 2.45738 2.52228 2.99093 3.32130 3.51239 3.57659 3.98680 4.06313 4.10193 4.16892 4.27220 4.32164 4.36986 4.43304 4.59513 4.64192 4.78240 4.79301 4.80566 4.82191 4.98396 4.98992 5.10233 5.24261 5.26898 5.37841 5.48446 5.54469 5.62773 5.70325 5.71819 5.85205 6.01313 6.21649 6.27367 6.39957 6.56809 6.94405 7.13783 7.23044 7.81545 8.39211 9.21457 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009906 B = 0.005060 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.994986 B = 5532.145881 C = 7825.754991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.037 4.037 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.587 5.587 10 C 0.170 3.830 11 C -0.084 4.084 12 C -0.070 4.070 13 C -0.141 4.141 14 C -0.122 4.122 15 C -0.131 4.131 16 C -0.123 4.123 17 C -0.102 4.102 18 C 0.197 3.803 19 H 0.073 0.927 20 C 0.126 3.874 21 N -0.694 5.694 22 C 0.591 3.409 23 O -0.579 6.579 24 C -0.043 4.043 25 C -0.207 4.207 26 C 0.016 3.984 27 N -0.369 5.369 28 H 0.462 0.538 29 N -0.282 5.282 30 H 0.248 0.752 31 H 0.004 0.996 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.133 0.867 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.413 0.587 42 H 0.167 0.833 43 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.584 -6.724 3.478 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.234 4.234 3 Si 0.789 3.211 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.308 5.308 10 C 0.045 3.955 11 C -0.122 4.122 12 C -0.071 4.071 13 C -0.159 4.159 14 C -0.140 4.140 15 C -0.149 4.149 16 C -0.142 4.142 17 C -0.104 4.104 18 C 0.089 3.911 19 H 0.091 0.909 20 C -0.001 4.001 21 N -0.344 5.344 22 C 0.377 3.623 23 O -0.459 6.459 24 C -0.202 4.202 25 C -0.235 4.235 26 C -0.129 4.129 27 N -0.086 5.086 28 H 0.310 0.690 29 N -0.119 5.119 30 H 0.057 0.943 31 H 0.022 0.978 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.144 0.856 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.251 0.749 42 H 0.184 0.816 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.984 -6.532 3.021 11.512 hybrid contribution 0.405 1.434 0.293 1.519 sum 9.389 -5.098 3.314 11.186 Atomic orbital electron populations 1.70116 1.06214 1.25528 1.54192 1.25604 0.95906 1.00822 1.01098 0.85472 0.77645 0.79965 0.78062 1.20404 1.22570 1.20788 1.19251 0.93100 0.85419 1.40838 0.91205 1.44149 1.36006 1.00747 1.49947 1.20608 0.86324 0.98943 0.89650 1.20726 0.98760 0.94014 0.98709 1.19857 0.93155 0.96020 0.98020 1.21385 0.98440 0.95804 1.00261 1.21336 0.97980 0.96524 0.98150 1.21327 0.92353 1.00434 1.00757 1.21330 1.00392 0.94013 0.98440 1.20077 0.94534 0.96283 0.99504 1.19625 0.92131 0.85442 0.93871 0.90936 1.21769 0.87684 0.93251 0.97352 1.45860 1.29535 1.21326 1.37650 1.17335 0.80904 0.84979 0.79101 1.90704 1.73894 1.21839 1.59451 1.21937 1.01397 0.93794 1.03085 1.22055 0.97069 1.02711 1.01676 1.23625 1.02851 0.88922 0.97477 1.43543 1.20666 1.17766 1.26587 0.68963 1.73616 1.05193 1.12115 1.21015 0.94263 0.97798 0.91656 0.92019 0.91371 0.85594 0.83516 0.83299 0.84912 0.93875 0.90828 0.74907 0.81577 0.74529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.92 10.14 21.65 0.22 -50.70 16 2 C -0.04 -1.98 4.93 84.86 0.42 -1.57 16 3 Si 0.96 43.46 29.59 68.60 2.03 45.49 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.26 -13.23 8.72 84.03 0.73 -12.50 16 8 H 0.07 3.50 7.30 -2.91 -0.02 3.48 16 9 N -0.59 -28.14 2.30 -680.13 -1.56 -29.70 16 10 C 0.17 8.21 5.46 86.17 0.47 8.68 16 11 C -0.08 -3.68 5.77 29.75 0.17 -3.51 16 12 C -0.07 -2.81 5.76 -19.85 -0.11 -2.92 16 13 C -0.14 -4.68 9.59 22.37 0.21 -4.46 16 14 C -0.12 -3.36 10.04 22.20 0.22 -3.14 16 15 C -0.13 -3.54 10.05 22.21 0.22 -3.32 16 16 C -0.12 -3.92 9.35 22.34 0.21 -3.71 16 17 C -0.10 -3.97 5.16 -19.82 -0.10 -4.07 16 18 C 0.20 8.16 2.50 44.24 0.11 8.27 16 19 H 0.07 3.02 7.98 -2.39 -0.02 3.00 16 20 C 0.13 4.92 5.01 86.38 0.43 5.35 16 21 N -0.69 -27.58 5.38 -466.10 -2.51 -30.09 16 22 C 0.59 23.39 7.83 86.75 0.68 24.07 16 23 O -0.58 -25.27 16.93 -3.95 -0.07 -25.34 16 24 C -0.04 -1.42 7.13 42.46 0.30 -1.12 16 25 C -0.21 -5.19 10.81 22.41 0.24 -4.95 16 26 C 0.02 0.25 12.02 83.54 1.00 1.26 16 27 N -0.37 -7.13 6.83 -57.51 -0.39 -7.52 16 28 H 0.46 5.12 8.96 -219.99 -1.97 3.15 16 29 N -0.28 -8.63 11.92 -48.18 -0.57 -9.20 16 30 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 31 H 0.00 0.19 7.48 -2.39 -0.02 0.18 16 32 H 0.07 3.52 5.94 -2.39 -0.01 3.50 16 33 H 0.06 2.44 8.11 -2.39 -0.02 2.42 16 34 H 0.07 3.44 7.13 -2.39 -0.02 3.42 16 35 H 0.13 3.73 8.05 -2.91 -0.02 3.71 16 36 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.13 3.64 8.05 -2.91 -0.02 3.62 16 39 H 0.04 1.85 7.55 -2.38 -0.02 1.83 16 40 H 0.07 2.65 8.04 -2.39 -0.02 2.63 16 41 H 0.41 17.07 6.40 -92.71 -0.59 16.48 16 42 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 43 H 0.24 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -71.18 356.09 0.86 -70.32 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -1.50 Total: 34.40 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 5.22 Total: 2.36 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -4.82 Total: -127.22 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.07 Total: -25.34 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -71.18 0.86 -70.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948893916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.902 kcal (2) G-P(sol) polarization free energy of solvation -71.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds