Wall clock time and date at job start Tue Mar 31 2020 15:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00414 * 2 1 4 4 H 1.48498 * 109.47362 * 270.00015 * 3 2 1 5 5 H 1.48500 * 109.47212 * 30.00179 * 3 2 1 6 6 H 1.48498 * 109.47477 * 149.99988 * 3 2 1 7 7 C 1.38815 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99775 * 192.76198 * 7 2 1 9 9 N 1.36937 * 119.99981 * 12.75979 * 7 2 1 10 10 C 1.47213 * 121.32151 * 33.53667 * 9 7 2 11 11 C 1.52791 * 107.93550 * 115.89939 * 10 9 7 12 12 C 1.50597 * 110.85558 * 47.51407 * 11 10 9 13 13 C 1.38981 * 117.62770 * 160.08306 * 12 11 10 14 14 C 1.37907 * 120.57859 * 178.52715 * 13 12 11 15 15 C 1.38271 * 119.82745 * 0.28452 * 14 13 12 16 16 C 1.37965 * 119.71541 * 0.26319 * 15 14 13 17 17 C 1.37671 * 122.85593 * 339.66449 * 12 11 10 18 18 C 1.46904 * 121.58445 * 213.90888 * 9 7 2 19 19 H 1.09000 * 110.00678 * 104.29134 * 18 9 7 20 20 C 1.52997 * 108.95251 * 344.37251 * 18 9 7 21 21 N 1.46498 * 109.46843 * 61.07795 * 20 18 9 22 22 C 1.34779 * 120.00295 * 185.70412 * 21 20 18 23 23 O 1.21606 * 119.99897 * 0.02562 * 22 21 20 24 24 C 1.47427 * 120.00156 * 180.02562 * 22 21 20 25 25 C 1.41294 * 126.41447 * 359.68044 * 24 22 21 26 26 N 1.30455 * 108.01804 * 179.85982 * 25 24 22 27 27 N 1.39926 * 108.90143 * 0.40999 * 26 25 24 28 28 H 0.96998 * 125.76018 * 179.73932 * 27 26 25 29 29 C 1.34263 * 108.49150 * 359.73776 * 27 26 25 30 30 H 0.97002 * 119.99562 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.77098 * 356.29233 * 10 9 7 32 32 H 1.08997 * 109.81128 * 235.53093 * 10 9 7 33 33 H 1.09006 * 109.19621 * 287.15869 * 11 10 9 34 34 H 1.08993 * 109.15934 * 167.84534 * 11 10 9 35 35 H 1.08000 * 119.71143 * 358.80038 * 13 12 11 36 36 H 1.08004 * 120.08819 * 180.31080 * 14 13 12 37 37 H 1.08000 * 120.14047 * 180.24619 * 15 14 13 38 38 H 1.07998 * 119.74818 * 179.97438 * 16 15 14 39 39 H 1.08995 * 109.47687 * 181.07866 * 20 18 9 40 40 H 1.09004 * 109.47018 * 301.08565 * 20 18 9 41 41 H 0.97006 * 120.00361 * 5.70523 * 21 20 18 42 42 H 1.07997 * 125.99106 * 0.02562 * 25 24 22 43 43 H 1.08000 * 126.29241 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0701 -1.2139 0.2061 9 7 1.3508 -2.3733 -0.2630 10 6 0.2186 -2.4201 -1.2028 11 6 0.6224 -3.3033 -2.3823 12 6 1.2379 -4.5910 -1.9018 13 6 1.2693 -5.6606 -2.7887 14 6 1.8460 -6.8587 -2.4227 15 6 2.3931 -7.0016 -1.1610 16 6 2.3532 -5.9451 -0.2746 17 6 1.7686 -4.7402 -0.6403 18 6 1.7350 -3.6346 0.3849 19 1 1.0179 -3.8861 1.1662 20 6 3.1247 -3.4720 1.0039 21 7 3.0880 -2.4126 2.0150 22 6 4.2272 -2.0128 2.6141 23 8 5.2858 -2.5312 2.3148 24 6 4.1901 -0.9471 3.6321 25 6 3.0435 -0.2513 4.0765 26 7 3.4194 0.6090 4.9823 27 7 4.8051 0.5129 5.1513 28 1 5.3398 1.0436 5.7623 29 6 5.2699 -0.4379 4.3252 30 1 -0.4849 0.8401 -0.0004 31 1 -0.0089 -1.4144 -1.5562 32 1 -0.6553 -2.8432 -0.7076 33 1 1.3448 -2.7690 -2.9994 34 1 -0.2613 -3.5291 -2.9791 35 1 0.8424 -5.5512 -3.7747 36 1 1.8705 -7.6832 -3.1200 37 1 2.8495 -7.9364 -0.8704 38 1 2.7800 -6.0563 0.7112 39 1 3.4266 -4.4095 1.4707 40 1 3.8403 -3.2066 0.2256 41 1 2.2436 -1.9988 2.2536 42 1 2.0327 -0.4065 3.7294 43 1 6.2994 -0.7478 4.2221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948895257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:39 Heat of formation + Delta-G solvation = 93.452983 kcal Electronic energy + Delta-G solvation = -28023.998843 eV Core-core repulsion = 24264.395205 eV Total energy + Delta-G solvation = -3759.603638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08972 -39.61204 -38.43671 -36.24983 -34.09580 -32.44612 -32.21106 -31.39917 -30.07994 -29.84772 -28.67668 -26.48645 -24.87869 -22.72625 -22.36254 -21.94431 -21.71562 -20.66160 -19.57819 -19.00465 -18.31777 -16.58709 -16.03589 -15.77593 -15.46344 -15.27447 -14.76203 -14.60617 -14.32406 -14.28271 -14.06281 -13.64508 -13.39759 -13.25056 -12.90639 -12.67474 -12.57495 -12.31278 -11.97995 -11.77515 -11.37645 -11.20616 -10.95798 -10.90968 -10.83436 -10.71680 -10.48194 -10.13961 -9.81322 -9.67565 -9.61899 -9.32192 -8.70408 -8.61001 -8.34566 -8.08188 -8.03128 -6.69603 -5.88500 -3.39525 1.75544 1.79481 1.84054 2.45925 2.84560 3.32686 3.41175 3.44419 3.89142 4.04815 4.20823 4.39520 4.92476 5.00163 5.20133 5.25007 5.28362 5.34956 5.40783 5.45996 5.53246 5.57721 5.70836 5.84083 5.94231 6.05351 6.08701 6.23192 6.25335 6.31377 6.43596 6.50632 6.58702 6.69656 6.76813 6.88417 6.89786 7.15151 7.19264 7.19795 7.32865 7.43841 7.61823 7.63739 7.77604 8.32679 8.37023 8.94684 9.09175 9.69063 10.31505 11.17386 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.004849 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.540773 B = 5773.032444 C = 7444.008853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.013 3.987 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.583 5.583 10 C 0.161 3.839 11 C -0.108 4.108 12 C -0.048 4.048 13 C -0.132 4.132 14 C -0.130 4.130 15 C -0.134 4.134 16 C -0.120 4.120 17 C -0.076 4.076 18 C 0.194 3.806 19 H 0.046 0.954 20 C 0.140 3.860 21 N -0.690 5.690 22 C 0.588 3.412 23 O -0.573 6.573 24 C -0.278 4.278 25 C 0.094 3.906 26 N -0.303 5.303 27 N -0.471 5.471 28 H 0.440 0.560 29 C 0.120 3.880 30 H 0.255 0.745 31 H 0.101 0.899 32 H 0.022 0.978 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.412 0.588 42 H 0.195 0.805 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.326 -6.375 3.798 8.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.187 4.187 3 Si 0.721 3.279 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.306 5.306 10 C 0.035 3.965 11 C -0.147 4.147 12 C -0.048 4.048 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.152 4.152 16 C -0.138 4.138 17 C -0.078 4.078 18 C 0.086 3.914 19 H 0.063 0.937 20 C 0.015 3.985 21 N -0.340 5.340 22 C 0.375 3.625 23 O -0.455 6.455 24 C -0.293 4.293 25 C -0.095 4.095 26 N -0.124 5.124 27 N -0.176 5.176 28 H 0.284 0.716 29 C -0.032 4.032 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.250 0.750 42 H 0.211 0.789 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 4.527 -5.666 4.396 8.481 hybrid contribution 0.561 0.700 -0.415 0.988 sum 5.087 -4.966 3.981 8.148 Atomic orbital electron populations 1.69946 1.05157 1.25643 1.53236 1.25101 0.95164 0.98071 1.00337 0.86442 0.79549 0.83994 0.77897 1.21465 1.21623 1.20128 1.19259 0.91844 0.83249 1.43560 0.90742 1.44044 1.37045 1.02727 1.46752 1.20906 0.88569 0.99575 0.87430 1.21188 0.99044 0.93624 1.00807 1.19715 0.96860 0.95456 0.92773 1.21202 1.01089 0.93440 0.99260 1.20926 0.99892 0.97405 0.96580 1.20927 1.01364 0.98542 0.94413 1.21150 1.00013 0.92974 0.99702 1.20173 0.97295 0.95197 0.95128 1.19605 0.93732 0.86619 0.91394 0.93687 1.21305 0.97492 0.89119 0.90552 1.45771 1.10094 1.38627 1.39466 1.17140 0.83899 0.81212 0.80262 1.90704 1.30321 1.58372 1.66079 1.20430 0.93200 1.07500 1.08178 1.24265 1.00179 0.92092 0.92915 1.77145 0.89458 1.23879 1.21889 1.46186 1.07066 1.30797 1.33597 0.71594 1.22960 0.99927 0.89625 0.90698 0.93470 0.88133 0.95997 0.91222 0.92396 0.86883 0.86982 0.86809 0.86356 0.92521 0.91214 0.74985 0.78874 0.79530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.37 11.17 55.49 0.62 -22.75 16 2 C 0.01 0.33 5.05 -17.43 -0.09 0.24 16 3 Si 0.89 20.87 29.57 -169.99 -5.03 15.84 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.25 -6.03 7.12 -15.06 -0.11 -6.13 16 8 H 0.08 1.87 5.76 -52.49 -0.30 1.57 16 9 N -0.58 -12.97 2.93 -166.17 -0.49 -13.45 16 10 C 0.16 3.51 5.58 -3.76 -0.02 3.49 16 11 C -0.11 -2.00 5.87 -28.04 -0.16 -2.17 16 12 C -0.05 -0.86 5.76 -104.60 -0.60 -1.46 16 13 C -0.13 -2.04 9.59 -39.43 -0.38 -2.42 16 14 C -0.13 -1.82 10.04 -39.69 -0.40 -2.22 16 15 C -0.13 -1.89 10.05 -39.67 -0.40 -2.29 16 16 C -0.12 -1.88 9.06 -39.46 -0.36 -2.23 16 17 C -0.08 -1.37 5.44 -104.55 -0.57 -1.93 16 18 C 0.19 3.73 3.07 -68.81 -0.21 3.52 16 19 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 20 C 0.14 2.61 4.12 -4.04 -0.02 2.59 16 21 N -0.69 -12.88 3.45 -61.38 -0.21 -13.09 16 22 C 0.59 11.18 7.78 -12.52 -0.10 11.08 16 23 O -0.57 -12.23 16.89 5.27 0.09 -12.14 16 24 C -0.28 -4.62 6.13 -105.06 -0.64 -5.26 16 25 C 0.09 1.52 11.50 -16.98 -0.20 1.32 16 26 N -0.30 -4.69 12.63 30.86 0.39 -4.30 16 27 N -0.47 -5.67 7.29 30.85 0.22 -5.45 16 28 H 0.44 3.45 8.96 -182.73 -1.64 1.81 16 29 C 0.12 1.60 11.82 -16.56 -0.20 1.40 16 30 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.10 2.46 5.88 -51.93 -0.31 2.16 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.11 1.53 8.05 -52.49 -0.42 1.10 16 36 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.66 6.66 -52.49 -0.35 1.31 16 39 H 0.06 0.96 6.59 -51.93 -0.34 0.62 16 40 H 0.07 1.48 7.76 -51.93 -0.40 1.07 16 41 H 0.41 7.76 6.37 -40.82 -0.26 7.50 16 42 H 0.19 2.98 7.50 -52.49 -0.39 2.58 16 43 H 0.19 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -30.40 351.78 -10.05 -40.45 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -6.51 Total: 12.07 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -4.44 Total: -2.47 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.54 Total: -59.05 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.40 -10.05 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948895257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.905 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds