Wall clock time and date at job start Tue Mar 31 2020 15:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99690 * 2 1 4 4 H 1.48504 * 109.47124 * 239.99995 * 3 2 1 5 5 H 1.48496 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46955 * 120.00259 * 3 2 1 7 7 C 1.38814 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00362 * 195.25100 * 7 2 1 9 9 N 1.36943 * 119.99709 * 15.25800 * 7 2 1 10 10 C 1.47239 * 121.35164 * 36.58803 * 9 7 2 11 11 C 1.52790 * 107.88213 * 115.67577 * 10 9 7 12 12 C 1.50611 * 110.85321 * 47.44324 * 11 10 9 13 13 C 1.38981 * 117.61078 * 160.39612 * 12 11 10 14 14 C 1.37899 * 120.58016 * 179.57037 * 13 12 11 15 15 C 1.38264 * 119.83135 * 359.95440 * 14 13 12 16 16 C 1.37950 * 119.71283 * 0.21965 * 15 14 13 17 17 C 1.37665 * 122.86759 * 340.27933 * 12 11 10 18 18 C 1.46686 * 121.34387 * 216.61576 * 9 7 2 19 19 H 1.08996 * 109.43691 * 104.25469 * 18 9 7 20 20 C 1.53004 * 109.43809 * 344.33683 * 18 9 7 21 21 N 1.46503 * 109.46986 * 59.71141 * 20 18 9 22 22 C 1.34772 * 119.99836 * 185.60704 * 21 20 18 23 23 O 1.21605 * 120.00216 * 0.02562 * 22 21 20 24 24 C 1.47410 * 120.00109 * 179.97438 * 22 21 20 25 25 N 1.31615 * 125.85946 * 0.03347 * 24 22 21 26 26 C 1.33105 * 109.09296 * 179.97438 * 25 24 22 27 27 C 1.35563 * 108.35247 * 359.97438 * 26 25 24 28 28 N 1.35406 * 107.15445 * 359.77688 * 27 26 25 29 29 H 0.97002 * 126.43615 * 180.24178 * 28 27 26 30 30 H 0.96997 * 120.00154 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.77841 * 235.27556 * 10 9 7 32 32 H 1.08998 * 109.77448 * 356.02877 * 10 9 7 33 33 H 1.08996 * 109.20286 * 167.79492 * 11 10 9 34 34 H 1.08999 * 109.20236 * 287.13872 * 11 10 9 35 35 H 1.07999 * 119.70359 * 359.54249 * 13 12 11 36 36 H 1.08000 * 120.08332 * 179.97438 * 14 13 12 37 37 H 1.07996 * 120.14470 * 180.23824 * 15 14 13 38 38 H 1.08003 * 119.74760 * 179.97438 * 16 15 14 39 39 H 1.08994 * 109.47181 * 299.71208 * 20 18 9 40 40 H 1.08997 * 109.46996 * 179.71268 * 20 18 9 41 41 H 0.97001 * 120.00067 * 5.60618 * 21 20 18 42 42 H 1.08002 * 125.82197 * 180.02562 * 26 25 24 43 43 H 1.07997 * 126.42099 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0618 -1.2187 0.2455 9 7 1.3618 -2.3670 -0.3132 10 6 0.3109 -2.4060 -1.3437 11 6 0.8050 -3.2944 -2.4843 12 6 1.3698 -4.5853 -1.9524 13 6 1.4733 -5.6547 -2.8340 14 6 1.9899 -6.8624 -2.4142 15 6 2.4102 -7.0132 -1.1056 16 6 2.3052 -5.9545 -0.2275 17 6 1.7817 -4.7392 -0.6479 18 6 1.6857 -3.6265 0.3655 19 1 0.9036 -3.8608 1.0877 20 6 3.0241 -3.4834 1.0929 21 7 2.9323 -2.4012 2.0762 22 6 4.0285 -2.0170 2.7596 23 8 5.0939 -2.5681 2.5598 24 6 3.9363 -0.9277 3.7486 25 7 2.8475 -0.2546 4.0549 26 6 3.1422 0.6495 4.9862 27 6 4.4615 0.5452 5.2801 28 7 4.9650 -0.4479 4.5095 29 1 5.8838 -0.7588 4.4982 30 1 -0.4850 0.8400 0.0004 31 1 -0.6040 -2.8220 -0.9219 32 1 0.1211 -1.3990 -1.7151 33 1 -0.0271 -3.5156 -3.1527 34 1 1.5803 -2.7666 -3.0398 35 1 1.1459 -5.5389 -3.8566 36 1 2.0664 -7.6883 -3.1059 37 1 2.8191 -7.9556 -0.7725 38 1 2.6329 -6.0718 0.7949 39 1 3.8072 -3.2526 0.3707 40 1 3.2628 -4.4173 1.6016 41 1 2.0826 -1.9613 2.2353 42 1 2.4484 1.3467 5.4324 43 1 5.0077 1.1401 5.9970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948913574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:46 Heat of formation + Delta-G solvation = 81.256974 kcal Electronic energy + Delta-G solvation = -28077.963247 eV Core-core repulsion = 24317.830751 eV Total energy + Delta-G solvation = -3760.132497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94093 -39.65499 -38.63380 -36.29278 -34.22606 -32.60825 -32.40670 -31.91256 -29.87265 -29.72172 -28.62990 -26.50546 -24.91738 -22.99971 -22.47716 -22.00463 -21.33633 -20.82298 -19.95262 -19.03315 -18.46856 -16.62149 -16.07449 -15.90765 -15.65809 -15.32312 -15.11287 -14.63028 -14.27956 -14.09890 -13.85223 -13.71253 -13.55075 -13.39313 -13.23398 -12.92420 -12.65142 -12.35046 -12.00120 -11.81456 -11.39879 -11.20975 -10.91105 -10.77049 -10.72347 -10.50910 -10.14849 -10.04077 -9.96398 -9.92143 -9.76149 -9.57248 -8.66327 -8.47085 -8.35411 -8.13683 -8.04263 -6.61489 -5.85311 -3.36706 1.66859 1.78424 1.83075 2.87116 2.93876 3.39820 3.43271 3.47209 3.83126 3.98224 4.19449 4.45495 4.73063 5.12658 5.20360 5.26373 5.28130 5.36047 5.41355 5.43166 5.52698 5.56399 5.68477 5.82640 5.97031 6.03385 6.12149 6.19977 6.22380 6.29344 6.40963 6.49193 6.68092 6.73249 6.76343 6.87188 6.87641 7.03013 7.15504 7.29810 7.30951 7.41099 7.56370 7.81188 7.94076 8.29375 8.41764 8.72092 9.12264 9.72797 10.36414 11.21617 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.004898 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.790312 B = 5715.118795 C = 7383.625869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.026 3.974 3 Si 0.894 3.106 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.581 5.581 10 C 0.167 3.833 11 C -0.108 4.108 12 C -0.047 4.047 13 C -0.131 4.131 14 C -0.130 4.130 15 C -0.134 4.134 16 C -0.120 4.120 17 C -0.076 4.076 18 C 0.194 3.806 19 H 0.047 0.953 20 C 0.138 3.862 21 N -0.661 5.661 22 C 0.595 3.405 23 O -0.569 6.569 24 C 0.158 3.842 25 N -0.429 5.429 26 C -0.029 4.029 27 C -0.039 4.039 28 N -0.531 5.531 29 H 0.426 0.574 30 H 0.256 0.744 31 H 0.024 0.976 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.428 0.572 42 H 0.175 0.825 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -5.663 4.394 8.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.724 3.276 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.304 5.304 10 C 0.041 3.959 11 C -0.147 4.147 12 C -0.047 4.047 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.152 4.152 16 C -0.139 4.139 17 C -0.078 4.078 18 C 0.087 3.913 19 H 0.064 0.936 20 C 0.014 3.986 21 N -0.312 5.312 22 C 0.379 3.621 23 O -0.449 6.449 24 C -0.104 4.104 25 N -0.150 5.150 26 C -0.182 4.182 27 C -0.178 4.178 28 N -0.133 5.133 29 H 0.265 0.735 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.269 0.731 42 H 0.192 0.808 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.524 -6.046 3.867 8.484 hybrid contribution 1.296 1.245 0.382 1.837 sum 5.820 -4.801 4.249 8.659 Atomic orbital electron populations 1.69977 1.05286 1.25921 1.51772 1.25110 0.95047 0.98246 0.99123 0.86498 0.79259 0.83679 0.78208 1.21263 1.21600 1.20412 1.18995 0.92077 0.83683 1.44306 0.91525 1.43918 1.43657 1.02881 1.39984 1.20795 0.89539 0.98879 0.86695 1.21192 0.99595 0.93638 1.00265 1.19699 0.96941 0.95478 0.92605 1.21198 1.01201 0.93323 0.99214 1.20922 1.00487 0.97306 0.96065 1.20918 1.01749 0.98504 0.94040 1.21144 1.00170 0.92912 0.99651 1.20170 0.97726 0.95100 0.94792 1.19549 0.93926 0.86783 0.91044 0.93622 1.21409 0.98507 0.88333 0.90345 1.45802 1.12356 1.35860 1.37153 1.16435 0.84723 0.80952 0.80034 1.90768 1.28593 1.57158 1.68376 1.22874 0.84144 1.02370 1.01012 1.70360 1.25762 1.06336 1.12551 1.22508 0.94135 1.01748 0.99828 1.22859 0.96983 0.96292 1.01632 1.42952 1.12541 1.27543 1.30247 0.73504 0.93395 0.95778 0.89089 0.92314 0.91167 0.86846 0.86959 0.86795 0.86391 0.90924 0.92087 0.73085 0.80825 0.80096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.16 11.56 55.49 0.64 -23.52 16 2 C 0.03 0.69 4.96 -17.43 -0.09 0.60 16 3 Si 0.89 21.71 29.58 -169.99 -5.03 16.68 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.26 -6.60 6.90 -15.06 -0.10 -6.70 16 8 H 0.07 1.75 5.94 -52.49 -0.31 1.44 16 9 N -0.58 -13.40 2.89 -166.31 -0.48 -13.88 16 10 C 0.17 3.70 5.59 -3.75 -0.02 3.68 16 11 C -0.11 -2.02 5.86 -28.03 -0.16 -2.18 16 12 C -0.05 -0.85 5.76 -104.60 -0.60 -1.45 16 13 C -0.13 -2.03 9.59 -39.43 -0.38 -2.41 16 14 C -0.13 -1.82 10.04 -39.70 -0.40 -2.22 16 15 C -0.13 -1.89 10.05 -39.68 -0.40 -2.29 16 16 C -0.12 -1.89 9.06 -39.46 -0.36 -2.25 16 17 C -0.08 -1.38 5.43 -104.55 -0.57 -1.95 16 18 C 0.19 3.88 3.05 -68.92 -0.21 3.67 16 19 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 20 C 0.14 2.65 4.13 -4.04 -0.02 2.64 16 21 N -0.66 -13.38 3.46 -61.39 -0.21 -13.59 16 22 C 0.60 11.93 7.80 -12.53 -0.10 11.84 16 23 O -0.57 -12.01 17.08 5.27 0.09 -11.92 16 24 C 0.16 2.91 7.95 -154.53 -1.23 1.68 16 25 N -0.43 -8.18 10.89 -11.26 -0.12 -8.30 16 26 C -0.03 -0.43 11.85 -17.96 -0.21 -0.65 16 27 C -0.04 -0.47 12.00 -16.93 -0.20 -0.67 16 28 N -0.53 -7.48 6.14 -10.78 -0.07 -7.54 16 29 H 0.43 4.88 8.96 -40.82 -0.37 4.52 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 2.25 6.22 -51.93 -0.32 1.92 16 33 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.11 1.53 8.05 -52.49 -0.42 1.11 16 36 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.66 6.72 -52.48 -0.35 1.31 16 39 H 0.07 1.53 7.83 -51.93 -0.41 1.13 16 40 H 0.06 1.04 6.66 -51.93 -0.35 0.70 16 41 H 0.43 9.37 6.98 -40.82 -0.28 9.09 16 42 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -30.81 353.41 -10.23 -41.04 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -5.33 Total: 14.38 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -5.05 Total: 1.33 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -0.24 Total: -66.84 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.81 -10.23 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948913574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.301 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds