Wall clock time and date at job start Tue Mar 31 2020 15:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99690 * 2 1 4 4 H 1.48504 * 109.47124 * 239.99995 * 3 2 1 5 5 H 1.48496 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46955 * 120.00259 * 3 2 1 7 7 C 1.38814 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00362 * 195.25100 * 7 2 1 9 9 N 1.36943 * 119.99709 * 15.25800 * 7 2 1 10 10 C 1.47239 * 121.35164 * 36.58803 * 9 7 2 11 11 C 1.52790 * 107.88213 * 115.67577 * 10 9 7 12 12 C 1.50611 * 110.85321 * 47.44324 * 11 10 9 13 13 C 1.38981 * 117.61078 * 160.39612 * 12 11 10 14 14 C 1.37899 * 120.58016 * 179.57037 * 13 12 11 15 15 C 1.38264 * 119.83135 * 359.95440 * 14 13 12 16 16 C 1.37950 * 119.71283 * 0.21965 * 15 14 13 17 17 C 1.37665 * 122.86759 * 340.27933 * 12 11 10 18 18 C 1.46686 * 121.34387 * 216.61576 * 9 7 2 19 19 H 1.08996 * 109.43691 * 104.25469 * 18 9 7 20 20 C 1.53004 * 109.43809 * 344.33683 * 18 9 7 21 21 N 1.46503 * 109.46986 * 59.71141 * 20 18 9 22 22 C 1.34772 * 119.99836 * 185.60704 * 21 20 18 23 23 O 1.21605 * 120.00216 * 0.02562 * 22 21 20 24 24 C 1.47410 * 120.00109 * 179.97438 * 22 21 20 25 25 N 1.31615 * 125.85946 * 0.03347 * 24 22 21 26 26 C 1.33105 * 109.09296 * 179.97438 * 25 24 22 27 27 C 1.35563 * 108.35247 * 359.97438 * 26 25 24 28 28 N 1.35406 * 107.15445 * 359.77688 * 27 26 25 29 29 H 0.97002 * 126.43615 * 180.24178 * 28 27 26 30 30 H 0.96997 * 120.00154 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.77841 * 235.27556 * 10 9 7 32 32 H 1.08998 * 109.77448 * 356.02877 * 10 9 7 33 33 H 1.08996 * 109.20286 * 167.79492 * 11 10 9 34 34 H 1.08999 * 109.20236 * 287.13872 * 11 10 9 35 35 H 1.07999 * 119.70359 * 359.54249 * 13 12 11 36 36 H 1.08000 * 120.08332 * 179.97438 * 14 13 12 37 37 H 1.07996 * 120.14470 * 180.23824 * 15 14 13 38 38 H 1.08003 * 119.74760 * 179.97438 * 16 15 14 39 39 H 1.08994 * 109.47181 * 299.71208 * 20 18 9 40 40 H 1.08997 * 109.46996 * 179.71268 * 20 18 9 41 41 H 0.97001 * 120.00067 * 5.60618 * 21 20 18 42 42 H 1.08002 * 125.82197 * 180.02562 * 26 25 24 43 43 H 1.07997 * 126.42099 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0618 -1.2187 0.2455 9 7 1.3618 -2.3670 -0.3132 10 6 0.3109 -2.4060 -1.3437 11 6 0.8050 -3.2944 -2.4843 12 6 1.3698 -4.5853 -1.9524 13 6 1.4733 -5.6547 -2.8340 14 6 1.9899 -6.8624 -2.4142 15 6 2.4102 -7.0132 -1.1056 16 6 2.3052 -5.9545 -0.2275 17 6 1.7817 -4.7392 -0.6479 18 6 1.6857 -3.6265 0.3655 19 1 0.9036 -3.8608 1.0877 20 6 3.0241 -3.4834 1.0929 21 7 2.9323 -2.4012 2.0762 22 6 4.0285 -2.0170 2.7596 23 8 5.0939 -2.5681 2.5598 24 6 3.9363 -0.9277 3.7486 25 7 2.8475 -0.2546 4.0549 26 6 3.1422 0.6495 4.9862 27 6 4.4615 0.5452 5.2801 28 7 4.9650 -0.4479 4.5095 29 1 5.8838 -0.7588 4.4982 30 1 -0.4850 0.8400 0.0004 31 1 -0.6040 -2.8220 -0.9219 32 1 0.1211 -1.3990 -1.7151 33 1 -0.0271 -3.5156 -3.1527 34 1 1.5803 -2.7666 -3.0398 35 1 1.1459 -5.5389 -3.8566 36 1 2.0664 -7.6883 -3.1059 37 1 2.8191 -7.9556 -0.7725 38 1 2.6329 -6.0718 0.7949 39 1 3.8072 -3.2526 0.3707 40 1 3.2628 -4.4173 1.6016 41 1 2.0826 -1.9613 2.2353 42 1 2.4484 1.3467 5.4324 43 1 5.0077 1.1401 5.9970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948913574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:45 Heat of formation + Delta-G solvation = 62.234290 kcal Electronic energy + Delta-G solvation = -28078.788133 eV Core-core repulsion = 24317.830751 eV Total energy + Delta-G solvation = -3760.957382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.14213 -41.08232 -40.10452 -37.85718 -35.81164 -34.19493 -33.89380 -33.28867 -31.48750 -30.97459 -29.99751 -28.09483 -26.59957 -24.45694 -23.94162 -23.47951 -22.48170 -22.22926 -21.34570 -20.55890 -19.84218 -18.29169 -17.55524 -17.50027 -17.04492 -16.76595 -16.52780 -16.07119 -15.97471 -15.59204 -15.16135 -15.10417 -14.95008 -14.82420 -14.54597 -14.39260 -13.92504 -13.87964 -13.54808 -13.39419 -13.09518 -12.78362 -12.73725 -12.56563 -12.20311 -12.07015 -12.04798 -11.55789 -11.35838 -11.29366 -11.22594 -11.18226 -10.57201 -9.99811 -9.57588 -9.47498 -9.33570 -8.52661 -7.86345 -5.37928 0.39055 0.57196 0.60021 1.40593 1.43102 1.47291 1.63279 1.72641 2.43915 2.48145 2.67652 2.96345 3.30286 3.41120 3.54436 3.95343 4.01363 4.10960 4.13829 4.25233 4.33869 4.36113 4.39995 4.47936 4.52652 4.59803 4.67541 4.79530 4.90269 4.98822 5.00107 5.11459 5.23665 5.26798 5.39885 5.44329 5.64578 5.65170 5.68152 5.72051 5.75607 5.95607 6.22252 6.25527 6.44655 6.50090 6.91745 7.14754 7.16689 7.79464 8.41561 9.18190 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.004898 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.790312 B = 5715.118795 C = 7383.625869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.014 4.014 3 Si 0.939 3.061 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.055 0.945 9 N -0.595 5.595 10 C 0.171 3.829 11 C -0.095 4.095 12 C -0.074 4.074 13 C -0.133 4.133 14 C -0.122 4.122 15 C -0.127 4.127 16 C -0.126 4.126 17 C -0.100 4.100 18 C 0.198 3.802 19 H 0.035 0.965 20 C 0.147 3.853 21 N -0.668 5.668 22 C 0.594 3.406 23 O -0.587 6.587 24 C 0.111 3.889 25 N -0.465 5.465 26 C -0.062 4.062 27 C 0.007 3.993 28 N -0.518 5.518 29 H 0.438 0.562 30 H 0.250 0.750 31 H 0.010 0.990 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.130 0.870 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.419 0.581 42 H 0.197 0.803 43 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.319 -7.109 4.869 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.770 3.230 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.073 0.927 9 N -0.318 5.318 10 C 0.045 3.955 11 C -0.134 4.134 12 C -0.074 4.074 13 C -0.151 4.151 14 C -0.140 4.140 15 C -0.145 4.145 16 C -0.144 4.144 17 C -0.102 4.102 18 C 0.091 3.909 19 H 0.052 0.948 20 C 0.023 3.977 21 N -0.317 5.317 22 C 0.379 3.621 23 O -0.469 6.469 24 C -0.149 4.149 25 N -0.188 5.188 26 C -0.215 4.215 27 C -0.133 4.133 28 N -0.121 5.121 29 H 0.280 0.720 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.152 0.848 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.148 0.852 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.258 0.742 42 H 0.214 0.786 43 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.128 -7.533 4.320 10.628 hybrid contribution 0.857 1.654 0.329 1.892 sum 6.985 -5.878 4.649 10.245 Atomic orbital electron populations 1.70073 1.06023 1.25723 1.53892 1.25519 0.95499 1.00045 1.00186 0.85787 0.78108 0.81720 0.77428 1.21510 1.21657 1.21238 1.18948 0.91521 0.84582 1.42301 0.92704 1.44072 1.43520 1.03440 1.40810 1.20625 0.89139 0.97968 0.87745 1.20963 0.99995 0.93614 0.98829 1.19730 0.98545 0.95879 0.93261 1.21413 1.00887 0.93038 0.99720 1.21361 0.98508 0.97533 0.96620 1.21337 1.00318 0.99077 0.93767 1.21310 0.99884 0.92456 1.00799 1.20054 1.00023 0.95407 0.94673 1.19549 0.93713 0.86148 0.91455 0.94766 1.21352 0.97354 0.89053 0.89903 1.45819 1.12115 1.36208 1.37592 1.16694 0.84159 0.81179 0.80083 1.90728 1.28885 1.58071 1.69245 1.22411 0.85602 1.03724 1.03124 1.70252 1.27011 1.07559 1.13995 1.23118 0.96323 1.02112 0.99964 1.23753 0.96054 0.93871 0.99582 1.43009 1.12508 1.27334 1.29291 0.72028 0.94014 0.97196 0.92047 0.90032 0.92246 0.84803 0.83385 0.83429 0.85193 0.93126 0.89853 0.74243 0.78617 0.74342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.99 11.56 21.65 0.25 -51.74 16 2 C -0.01 -0.77 4.96 84.86 0.42 -0.35 16 3 Si 0.94 46.21 29.58 68.60 2.03 48.24 16 4 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 7 C -0.24 -12.84 6.90 84.03 0.58 -12.26 16 8 H 0.06 3.02 5.94 -2.91 -0.02 3.01 16 9 N -0.59 -28.71 2.89 -680.09 -1.97 -30.67 16 10 C 0.17 7.95 5.59 86.17 0.48 8.44 16 11 C -0.10 -3.61 5.86 29.75 0.17 -3.44 16 12 C -0.07 -2.62 5.76 -19.85 -0.11 -2.73 16 13 C -0.13 -3.76 9.59 22.37 0.21 -3.54 16 14 C -0.12 -2.93 10.04 22.20 0.22 -2.71 16 15 C -0.13 -3.12 10.05 22.21 0.22 -2.89 16 16 C -0.13 -3.75 9.06 22.35 0.20 -3.55 16 17 C -0.10 -3.62 5.43 -19.82 -0.11 -3.73 16 18 C 0.20 8.19 3.05 44.25 0.13 8.32 16 19 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 20 C 0.15 5.85 4.13 86.38 0.36 6.21 16 21 N -0.67 -28.30 3.46 -466.39 -1.61 -29.92 16 22 C 0.59 24.54 7.80 86.66 0.68 25.22 16 23 O -0.59 -25.27 17.08 -4.05 -0.07 -25.34 16 24 C 0.11 4.12 7.95 136.28 1.08 5.20 16 25 N -0.47 -17.97 10.89 -189.53 -2.06 -20.04 16 26 C -0.06 -1.77 11.85 83.88 0.99 -0.77 16 27 C 0.01 0.15 12.00 83.52 1.00 1.16 16 28 N -0.52 -13.70 6.14 -188.02 -1.16 -14.86 16 29 H 0.44 9.18 8.96 -92.71 -0.83 8.35 16 30 H 0.25 14.05 8.31 -92.71 -0.77 13.27 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.06 3.20 6.22 -2.39 -0.01 3.19 16 33 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.13 3.18 8.05 -2.91 -0.02 3.15 16 36 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 38 H 0.13 3.44 6.72 -2.91 -0.02 3.42 16 39 H 0.05 2.22 7.83 -2.39 -0.02 2.20 16 40 H 0.08 2.88 6.66 -2.39 -0.02 2.87 16 41 H 0.42 19.44 6.98 -92.71 -0.65 18.79 16 42 H 0.20 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.24 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -71.19 353.41 1.55 -69.64 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.41 Total: 36.11 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 6.55 Total: 18.57 kcal Atomic # 7 Polarization: -140.67 SS G_CDS: -6.55 Total: -147.22 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.07 Total: -25.34 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -71.19 1.55 -69.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948913574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.874 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds