Wall clock time and date at job start Tue Mar 31 2020 15:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08996 * 110.26911 * 32.92260 * 10 9 7 12 12 C 1.51373 * 110.30067 * 270.74509 * 10 9 7 13 13 C 1.38495 * 130.38820 * 78.26916 * 12 10 9 14 14 C 1.38105 * 120.21490 * 179.97438 * 13 12 10 15 15 C 1.38253 * 119.93122 * 359.97438 * 14 13 12 16 16 C 1.38098 * 119.93967 * 0.02562 * 15 14 13 17 17 C 1.38223 * 109.75723 * 258.26300 * 12 10 9 18 18 C 1.51364 * 109.75964 * 0.02562 * 17 12 10 19 19 C 1.54343 * 110.30094 * 155.00218 * 10 9 7 20 20 H 1.09000 * 110.82636 * 334.15015 * 19 10 9 21 21 N 1.46504 * 110.81799 * 210.80152 * 19 10 9 22 22 C 1.34776 * 119.99822 * 155.00182 * 21 19 10 23 23 O 1.21287 * 120.00357 * 359.97438 * 22 21 19 24 24 C 1.50705 * 120.00018 * 179.97438 * 22 21 19 25 25 N 1.46497 * 109.46939 * 179.97438 * 24 22 21 26 26 C 1.34954 * 126.03725 * 124.71745 * 25 24 22 27 27 C 1.35308 * 107.74790 * 179.83501 * 26 25 24 28 28 C 1.39875 * 107.91925 * 0.42394 * 27 26 25 29 29 N 1.30834 * 108.20279 * 359.73811 * 28 27 26 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.07997 * 119.89680 * 359.97438 * 13 12 10 33 33 H 1.08003 * 120.03245 * 179.97438 * 14 13 12 34 34 H 1.08011 * 120.03055 * 180.02562 * 15 14 13 35 35 H 1.07999 * 119.89488 * 179.97438 * 16 15 14 36 36 H 1.08999 * 110.30046 * 223.88748 * 18 17 12 37 37 H 1.09001 * 110.30205 * 101.73224 * 18 17 12 38 38 H 0.96999 * 120.00254 * 334.99207 * 21 19 10 39 39 H 1.08999 * 109.47037 * 299.99616 * 24 22 21 40 40 H 1.08998 * 109.47016 * 59.99608 * 24 22 21 41 41 H 1.08001 * 126.12171 * 0.02562 * 26 25 24 42 42 H 1.08005 * 126.04670 * 180.15952 * 27 26 25 43 43 H 1.08002 * 125.90043 * 179.71189 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9900 -3.5576 0.5428 12 6 2.3365 -4.0949 -1.4354 13 6 3.2963 -3.6633 -2.3357 14 6 3.3630 -4.2170 -3.5991 15 6 2.4695 -5.2057 -3.9670 16 6 1.5117 -5.6375 -3.0707 17 6 1.4426 -5.0828 -1.8035 18 6 0.5018 -5.3757 -0.6544 19 6 1.1895 -4.7797 0.5924 20 1 0.4544 -4.3701 1.2852 21 7 2.0250 -5.7832 1.2565 22 6 1.5110 -6.5399 2.2463 23 8 0.3568 -6.3898 2.5875 24 6 2.3703 -7.5727 2.9291 25 7 1.5859 -8.2559 3.9607 26 6 1.3962 -9.5882 4.0616 27 6 0.6197 -9.8132 5.1466 28 6 0.3166 -8.5754 5.7231 29 7 0.8952 -7.6412 5.0131 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 3.9949 -2.8912 -2.0489 33 1 4.1124 -3.8779 -4.2990 34 1 2.5205 -5.6402 -4.9546 35 1 0.8138 -6.4096 -3.3590 36 1 0.3723 -6.4515 -0.5365 37 1 -0.4615 -4.8941 -0.8222 38 1 2.9482 -5.9032 0.9839 39 1 2.7171 -8.2998 2.1949 40 1 3.2286 -7.0839 3.3900 41 1 1.7955 -10.3403 3.3973 42 1 0.2885 -10.7778 5.5021 43 1 -0.2906 -8.4179 6.6023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960251761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:32 Heat of formation + Delta-G solvation = 97.509736 kcal Electronic energy + Delta-G solvation = -26834.504397 eV Core-core repulsion = 23075.076673 eV Total energy + Delta-G solvation = -3759.427724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25679 -40.23835 -38.94741 -36.21054 -34.06592 -33.46678 -32.54928 -31.19902 -30.15622 -29.80694 -28.49624 -27.02401 -26.07589 -23.37744 -22.38343 -21.47458 -21.16681 -20.62983 -20.18216 -19.97271 -17.69725 -17.31705 -17.21236 -16.13618 -15.72762 -15.56689 -14.92455 -14.73543 -14.52346 -14.39089 -14.23236 -13.67763 -13.60745 -13.34179 -13.14716 -12.98856 -12.93482 -12.86045 -12.69635 -12.36573 -11.63195 -11.39189 -11.13518 -11.06007 -10.87682 -10.65956 -10.62817 -10.43948 -10.14734 -10.09795 -9.87021 -9.39257 -9.12401 -8.95347 -8.68261 -8.39024 -8.15334 -7.13086 -5.87164 -3.17780 1.76929 1.78779 1.82629 2.28372 2.56564 2.83578 3.15017 3.38052 3.43133 3.45833 4.16500 4.34360 4.51576 4.56040 4.66486 4.76027 4.81822 4.98088 5.02716 5.29369 5.37862 5.44446 5.45854 5.47143 5.56514 5.66218 5.69673 5.85152 5.90869 5.94021 6.05141 6.14168 6.20952 6.30864 6.43330 6.54448 6.57108 6.70252 6.82595 6.85492 6.92002 7.17210 7.42292 7.51019 7.59958 7.66755 8.21780 8.28606 9.40820 9.91656 10.27029 11.34529 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.003463 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.471782 B = 8083.881186 C = 9951.102676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.703 5.703 10 C 0.208 3.792 11 H 0.064 0.936 12 C -0.094 4.094 13 C -0.090 4.090 14 C -0.128 4.128 15 C -0.132 4.132 16 C -0.115 4.115 17 C -0.097 4.097 18 C -0.086 4.086 19 C 0.137 3.863 20 H 0.111 0.889 21 N -0.711 5.711 22 C 0.498 3.502 23 O -0.508 6.508 24 C 0.115 3.885 25 N -0.362 5.362 26 C 0.049 3.951 27 C -0.273 4.273 28 C 0.037 3.963 29 N -0.262 5.262 30 H 0.257 0.743 31 H 0.388 0.612 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.400 0.600 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.172 0.828 42 H 0.146 0.854 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.225 -20.603 1.307 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.342 5.342 10 C 0.096 3.904 11 H 0.082 0.918 12 C -0.097 4.097 13 C -0.109 4.109 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.133 4.133 17 C -0.098 4.098 18 C -0.124 4.124 19 C 0.032 3.968 20 H 0.128 0.872 21 N -0.363 5.363 22 C 0.282 3.718 23 O -0.381 6.381 24 C -0.011 4.011 25 N -0.145 5.145 26 C -0.096 4.096 27 C -0.302 4.302 28 C -0.151 4.151 29 N -0.082 5.082 30 H 0.067 0.933 31 H 0.223 0.777 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.234 0.766 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.189 0.811 42 H 0.164 0.836 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.746 -18.965 1.369 20.175 hybrid contribution 0.382 0.048 -0.481 0.616 sum 7.128 -18.918 0.888 20.235 Atomic orbital electron populations 1.69673 1.05175 1.25909 1.56449 1.24781 0.95525 0.97825 1.02203 0.86107 0.78793 0.83902 0.77278 1.20428 1.21751 1.21685 1.19226 0.91027 0.83566 1.43834 0.90899 1.42277 1.05841 0.98843 1.87235 1.19833 0.94909 0.86431 0.89236 0.91771 1.21752 0.94103 0.94049 0.99829 1.20620 0.98463 0.98845 0.92974 1.20976 0.99669 0.97642 0.96275 1.20852 0.96580 0.98702 0.98892 1.20478 0.99087 1.00741 0.92966 1.20519 0.97322 0.97344 0.94623 1.21406 0.98160 1.00918 0.91929 1.21947 0.93661 0.87762 0.93475 0.87155 1.45801 1.15722 1.38228 1.36594 1.20441 0.88578 0.82573 0.80250 1.90811 1.17299 1.67298 1.62688 1.21490 0.93425 0.96590 0.89574 1.48110 1.40011 1.04318 1.22060 1.22515 1.00989 0.85929 1.00162 1.21477 1.08874 0.99356 1.00505 1.23939 1.00178 0.90826 1.00115 1.77568 1.11028 1.21350 0.98289 0.93285 0.77736 0.86536 0.86702 0.86803 0.87209 0.91205 0.89383 0.76638 0.85847 0.86730 0.81065 0.83621 0.80143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.25 -6.55 9.96 -15.06 -0.15 -6.70 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.70 -16.97 5.13 -53.54 -0.27 -17.24 16 10 C 0.21 3.90 3.13 -68.05 -0.21 3.69 16 11 H 0.06 1.18 8.03 -51.93 -0.42 0.77 16 12 C -0.09 -1.65 5.77 -104.20 -0.60 -2.25 16 13 C -0.09 -1.53 10.04 -39.54 -0.40 -1.93 16 14 C -0.13 -1.88 10.05 -39.62 -0.40 -2.27 16 15 C -0.13 -1.83 10.05 -39.63 -0.40 -2.23 16 16 C -0.11 -1.68 10.04 -39.54 -0.40 -2.07 16 17 C -0.10 -1.57 6.14 -104.20 -0.64 -2.21 16 18 C -0.09 -1.35 6.49 -26.84 -0.17 -1.52 16 19 C 0.14 2.26 3.03 -66.51 -0.20 2.06 16 20 H 0.11 2.17 7.47 -51.93 -0.39 1.79 16 21 N -0.71 -9.05 5.11 -52.43 -0.27 -9.32 16 22 C 0.50 6.82 7.86 -10.98 -0.09 6.73 16 23 O -0.51 -9.57 15.35 5.55 0.09 -9.48 16 24 C 0.12 1.07 6.99 -5.19 -0.04 1.03 16 25 N -0.36 -4.39 3.40 -62.55 -0.21 -4.60 16 26 C 0.05 0.47 11.45 -17.22 -0.20 0.27 16 27 C -0.27 -2.72 10.80 -40.01 -0.43 -3.16 16 28 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 29 N -0.26 -3.96 11.64 30.63 0.36 -3.60 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.39 10.16 7.83 -40.82 -0.32 9.84 16 32 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.40 3.86 8.66 -40.82 -0.35 3.50 16 39 H 0.12 0.61 8.07 -51.93 -0.42 0.19 16 40 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.18 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -35.90 370.85 -9.32 -45.22 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -5.67 Total: 13.90 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -4.63 Total: -10.60 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.33 Total: -61.58 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.90 -9.32 -45.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960251761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.732 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds