Wall clock time and date at job start Tue Mar 31 2020 15:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08996 * 110.26911 * 32.92260 * 10 9 7 12 12 C 1.51373 * 110.30067 * 270.74509 * 10 9 7 13 13 C 1.38495 * 130.38820 * 78.26916 * 12 10 9 14 14 C 1.38105 * 120.21490 * 179.97438 * 13 12 10 15 15 C 1.38253 * 119.93122 * 359.97438 * 14 13 12 16 16 C 1.38098 * 119.93967 * 0.02562 * 15 14 13 17 17 C 1.38223 * 109.75723 * 258.26300 * 12 10 9 18 18 C 1.51364 * 109.75964 * 0.02562 * 17 12 10 19 19 C 1.54343 * 110.30094 * 155.00218 * 10 9 7 20 20 H 1.09000 * 110.82636 * 334.15015 * 19 10 9 21 21 N 1.46504 * 110.81799 * 210.80152 * 19 10 9 22 22 C 1.34776 * 119.99822 * 155.00182 * 21 19 10 23 23 O 1.21287 * 120.00357 * 359.97438 * 22 21 19 24 24 C 1.50705 * 120.00018 * 179.97438 * 22 21 19 25 25 N 1.46497 * 109.46939 * 179.97438 * 24 22 21 26 26 C 1.34954 * 126.03725 * 124.71745 * 25 24 22 27 27 C 1.35308 * 107.74790 * 179.83501 * 26 25 24 28 28 C 1.39875 * 107.91925 * 0.42394 * 27 26 25 29 29 N 1.30834 * 108.20279 * 359.73811 * 28 27 26 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.07997 * 119.89680 * 359.97438 * 13 12 10 33 33 H 1.08003 * 120.03245 * 179.97438 * 14 13 12 34 34 H 1.08011 * 120.03055 * 180.02562 * 15 14 13 35 35 H 1.07999 * 119.89488 * 179.97438 * 16 15 14 36 36 H 1.08999 * 110.30046 * 223.88748 * 18 17 12 37 37 H 1.09001 * 110.30205 * 101.73224 * 18 17 12 38 38 H 0.96999 * 120.00254 * 334.99207 * 21 19 10 39 39 H 1.08999 * 109.47037 * 299.99616 * 24 22 21 40 40 H 1.08998 * 109.47016 * 59.99608 * 24 22 21 41 41 H 1.08001 * 126.12171 * 0.02562 * 26 25 24 42 42 H 1.08005 * 126.04670 * 180.15952 * 27 26 25 43 43 H 1.08002 * 125.90043 * 179.71189 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9900 -3.5576 0.5428 12 6 2.3365 -4.0949 -1.4354 13 6 3.2963 -3.6633 -2.3357 14 6 3.3630 -4.2170 -3.5991 15 6 2.4695 -5.2057 -3.9670 16 6 1.5117 -5.6375 -3.0707 17 6 1.4426 -5.0828 -1.8035 18 6 0.5018 -5.3757 -0.6544 19 6 1.1895 -4.7797 0.5924 20 1 0.4544 -4.3701 1.2852 21 7 2.0250 -5.7832 1.2565 22 6 1.5110 -6.5399 2.2463 23 8 0.3568 -6.3898 2.5875 24 6 2.3703 -7.5727 2.9291 25 7 1.5859 -8.2559 3.9607 26 6 1.3962 -9.5882 4.0616 27 6 0.6197 -9.8132 5.1466 28 6 0.3166 -8.5754 5.7231 29 7 0.8952 -7.6412 5.0131 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 3.9949 -2.8912 -2.0489 33 1 4.1124 -3.8779 -4.2990 34 1 2.5205 -5.6402 -4.9546 35 1 0.8138 -6.4096 -3.3590 36 1 0.3723 -6.4515 -0.5365 37 1 -0.4615 -4.8941 -0.8222 38 1 2.9482 -5.9032 0.9839 39 1 2.7171 -8.2998 2.1949 40 1 3.2286 -7.0839 3.3900 41 1 1.7955 -10.3403 3.3973 42 1 0.2885 -10.7778 5.5021 43 1 -0.2906 -8.4179 6.6023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960251761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:31 Heat of formation + Delta-G solvation = 72.675035 kcal Electronic energy + Delta-G solvation = -26835.581310 eV Core-core repulsion = 23075.076673 eV Total energy + Delta-G solvation = -3760.504637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.09918 -41.47653 -40.11695 -37.54926 -35.76782 -34.44805 -33.80767 -32.78084 -31.34593 -30.95814 -29.61027 -28.02315 -27.65654 -25.20832 -23.57864 -22.55681 -21.93811 -21.72203 -21.52665 -21.11535 -19.40542 -18.42825 -18.21090 -17.40082 -16.95761 -16.69262 -16.45950 -16.02292 -15.78174 -15.46636 -15.29859 -15.20161 -14.97649 -14.57956 -14.34268 -14.23026 -14.13312 -13.94311 -13.61202 -13.19666 -13.14075 -12.94965 -12.81323 -12.63060 -12.32298 -12.20165 -12.02590 -11.85656 -11.66652 -11.50653 -11.19698 -11.03440 -10.32014 -10.21298 -9.62612 -9.47657 -9.41934 -9.09846 -7.98687 -5.29296 0.55008 0.59512 0.99792 1.44610 1.45894 1.50906 1.54943 1.55653 2.03755 2.11708 2.53370 2.94429 3.34378 3.39441 3.57362 3.72415 3.79059 4.04714 4.09300 4.10966 4.17412 4.18517 4.26448 4.27988 4.31991 4.46584 4.67078 4.73187 4.75124 4.81712 4.89893 4.95036 4.96637 5.19528 5.20006 5.30489 5.41651 5.48175 5.65525 5.71380 5.76246 5.89546 6.14831 6.19556 6.23862 6.50131 6.84573 7.18793 7.27277 7.96344 8.20949 9.24589 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.003463 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.471782 B = 8083.881186 C = 9951.102676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.720 5.720 10 C 0.207 3.793 11 H 0.064 0.936 12 C -0.114 4.114 13 C -0.110 4.110 14 C -0.127 4.127 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.102 4.102 18 C -0.077 4.077 19 C 0.149 3.851 20 H 0.070 0.930 21 N -0.697 5.697 22 C 0.496 3.504 23 O -0.566 6.566 24 C 0.118 3.882 25 N -0.374 5.374 26 C 0.057 3.943 27 C -0.285 4.285 28 C 0.024 3.976 29 N -0.330 5.330 30 H 0.251 0.749 31 H 0.372 0.628 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.135 0.865 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.418 0.582 39 H 0.178 0.822 40 H 0.136 0.864 41 H 0.218 0.782 42 H 0.171 0.829 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.727 -23.538 -0.616 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.358 5.358 10 C 0.098 3.902 11 H 0.082 0.918 12 C -0.117 4.117 13 C -0.128 4.128 14 C -0.145 4.145 15 C -0.140 4.140 16 C -0.134 4.134 17 C -0.103 4.103 18 C -0.115 4.115 19 C 0.042 3.958 20 H 0.088 0.912 21 N -0.350 5.350 22 C 0.282 3.718 23 O -0.443 6.443 24 C -0.006 4.006 25 N -0.158 5.158 26 C -0.088 4.088 27 C -0.314 4.314 28 C -0.163 4.163 29 N -0.151 5.151 30 H 0.060 0.940 31 H 0.204 0.796 32 H 0.127 0.873 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.153 0.847 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.255 0.745 39 H 0.195 0.805 40 H 0.153 0.847 41 H 0.235 0.765 42 H 0.189 0.811 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 9.345 -21.961 -0.565 23.873 hybrid contribution -0.343 0.799 0.075 0.872 sum 9.002 -21.163 -0.490 23.003 Atomic orbital electron populations 1.69838 1.06773 1.26039 1.59217 1.25581 0.96301 1.01157 1.03500 0.85096 0.78511 0.79815 0.76483 1.18489 1.22197 1.22327 1.19604 0.91464 0.84547 1.41127 0.90102 1.42422 1.05292 1.00298 1.87823 1.19947 0.94495 0.85076 0.90731 0.91780 1.21472 0.95791 0.95691 0.98721 1.20764 0.98599 0.99323 0.94150 1.21303 1.00300 0.97302 0.95552 1.21299 0.95098 0.97536 1.00094 1.20834 0.99580 1.00914 0.92077 1.20572 0.96790 0.97443 0.95494 1.21272 0.97222 1.01532 0.91505 1.21446 0.92998 0.88197 0.93145 0.91227 1.45591 1.16144 1.37011 1.36247 1.21320 0.88328 0.82735 0.79458 1.90795 1.20159 1.69102 1.64263 1.21794 0.92185 0.96676 0.89949 1.48333 1.40226 1.05318 1.21886 1.23305 0.99626 0.85634 1.00186 1.21885 1.09097 0.99599 1.00808 1.24393 0.99822 0.91633 1.00416 1.77477 1.13524 1.23647 1.00473 0.94041 0.79552 0.87295 0.84036 0.83198 0.84667 0.89531 0.91244 0.74474 0.80493 0.84661 0.76506 0.81135 0.78846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 7 C -0.24 -12.89 9.96 84.04 0.84 -12.05 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.72 -36.30 5.13 -323.30 -1.66 -37.95 16 10 C 0.21 7.99 3.13 44.91 0.14 8.13 16 11 H 0.06 2.41 8.03 -2.39 -0.02 2.39 16 12 C -0.11 -3.95 5.77 -19.59 -0.11 -4.07 16 13 C -0.11 -3.57 10.04 22.30 0.22 -3.35 16 14 C -0.13 -3.33 10.05 22.24 0.22 -3.10 16 15 C -0.12 -2.88 10.05 22.24 0.22 -2.66 16 16 C -0.12 -3.02 10.04 22.30 0.22 -2.79 16 17 C -0.10 -3.18 6.14 -19.59 -0.12 -3.30 16 18 C -0.08 -2.44 6.49 30.52 0.20 -2.24 16 19 C 0.15 5.11 3.03 45.91 0.14 5.25 16 20 H 0.07 2.99 7.47 -2.39 -0.02 2.97 16 21 N -0.70 -17.39 5.11 -438.17 -2.24 -19.63 16 22 C 0.50 13.35 7.86 87.66 0.69 14.04 16 23 O -0.57 -22.16 15.35 -3.05 -0.05 -22.20 16 24 C 0.12 1.90 6.99 85.64 0.60 2.49 16 25 N -0.37 -8.47 3.40 -351.80 -1.20 -9.67 16 26 C 0.06 0.92 11.45 83.54 0.96 1.88 16 27 C -0.28 -5.19 10.80 21.99 0.24 -4.95 16 28 C 0.02 0.57 12.03 85.24 1.03 1.60 16 29 N -0.33 -10.15 11.64 -57.02 -0.66 -10.82 16 30 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 31 H 0.37 20.75 7.83 -92.71 -0.73 20.03 16 32 H 0.11 3.62 8.06 -2.91 -0.02 3.59 16 33 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.09 2.40 8.09 -2.39 -0.02 2.38 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.42 7.34 8.66 -92.71 -0.80 6.54 16 39 H 0.18 0.86 8.07 -2.39 -0.02 0.84 16 40 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.22 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 43 H 0.19 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -84.00 370.85 1.98 -82.03 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: -0.48 Total: 38.74 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 5.95 Total: -8.85 kcal Atomic # 7 Polarization: -132.45 SS G_CDS: -5.47 Total: -137.92 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -84.00 1.98 -82.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960251761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.703 kcal (2) G-P(sol) polarization free energy of solvation -84.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds