Wall clock time and date at job start Tue Mar 31 2020 15:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99532 * 2 1 4 4 H 1.48494 * 109.47071 * 270.00176 * 3 2 1 5 5 H 1.48499 * 109.47159 * 30.00018 * 3 2 1 6 6 H 1.48498 * 109.46835 * 149.99935 * 3 2 1 7 7 C 1.38810 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99679 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00111 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99759 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.27408 * 35.62570 * 10 9 7 12 12 C 1.51369 * 110.30441 * 273.54367 * 10 9 7 13 13 C 1.38492 * 130.38793 * 78.14406 * 12 10 9 14 14 C 1.38105 * 120.21736 * 180.02562 * 13 12 10 15 15 C 1.38255 * 119.93360 * 0.02562 * 14 13 12 16 16 C 1.38104 * 119.93360 * 359.97438 * 15 14 13 17 17 C 1.38213 * 109.76141 * 258.17519 * 12 10 9 18 18 C 1.51376 * 109.76044 * 359.97438 * 17 12 10 19 19 C 1.54346 * 105.16602 * 342.81629 * 18 17 12 20 20 H 1.09001 * 110.82114 * 144.57833 * 19 18 17 21 21 N 1.46509 * 110.82418 * 268.11918 * 19 18 17 22 22 C 1.34772 * 119.99992 * 273.55079 * 21 19 18 23 23 O 1.21282 * 120.00052 * 0.02562 * 22 21 19 24 24 C 1.50704 * 119.99976 * 179.97438 * 22 21 19 25 25 C 1.50693 * 109.47336 * 180.02562 * 24 22 21 26 26 C 1.39865 * 125.90317 * 124.99780 * 25 24 22 27 27 C 1.35318 * 107.92346 * 179.97438 * 26 25 24 28 28 N 1.34944 * 107.74689 * 0.02562 * 27 26 25 29 29 H 0.96998 * 126.04006 * 180.02562 * 28 27 26 30 30 N 1.30841 * 125.89500 * 304.69364 * 25 24 22 31 31 H 0.96993 * 120.00438 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99632 * 359.97438 * 9 7 2 33 33 H 1.08003 * 119.89365 * 0.05916 * 13 12 10 34 34 H 1.08005 * 120.03501 * 179.97438 * 14 13 12 35 35 H 1.07995 * 120.03118 * 180.02562 * 15 14 13 36 36 H 1.07998 * 119.89500 * 180.02562 * 16 15 14 37 37 H 1.08993 * 110.30376 * 101.73942 * 18 17 12 38 38 H 1.08999 * 110.30152 * 223.89610 * 18 17 12 39 39 H 0.97005 * 119.99860 * 93.54688 * 21 19 18 40 40 H 1.09002 * 109.46882 * 299.99943 * 24 22 21 41 41 H 1.08994 * 109.47140 * 59.99646 * 24 22 21 42 42 H 1.08008 * 126.03792 * 0.02562 * 26 25 24 43 43 H 1.08000 * 126.12510 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0584 -3.6567 -0.0005 11 1 2.9669 -3.5681 0.5950 12 6 2.3970 -4.0676 -1.4175 13 6 3.3925 -3.6176 -2.2687 14 6 3.5126 -4.1467 -3.5387 15 6 2.6363 -5.1284 -3.9628 16 6 1.6430 -5.5784 -3.1154 17 6 1.5213 -5.0493 -1.8413 18 6 0.5344 -5.3658 -0.7379 19 6 1.1681 -4.7925 0.5474 20 1 0.4018 -4.3967 1.2140 21 7 1.9774 -5.8075 1.2266 22 6 1.3994 -6.6582 2.0976 23 8 0.2093 -6.5838 2.3188 24 6 2.2318 -7.7026 2.7958 25 6 1.3526 -8.5182 3.7082 26 6 1.2225 -9.9107 3.6927 27 6 0.3435 -10.2576 4.6613 28 7 -0.0685 -9.1247 5.2678 29 1 -0.7008 -9.0675 6.0012 30 7 0.5832 -8.0463 4.6555 31 1 -0.4850 0.8399 0.0004 32 1 0.3557 -2.3880 0.0002 33 1 4.0774 -2.8509 -1.9381 34 1 4.2897 -3.7933 -4.2003 35 1 2.7290 -5.5435 -4.9555 36 1 0.9592 -6.3456 -3.4472 37 1 -0.4222 -4.8825 -0.9360 38 1 0.4026 -6.4439 -0.6462 39 1 2.9293 -5.8672 1.0493 40 1 2.6910 -8.3565 2.0543 41 1 3.0105 -7.2145 3.3817 42 1 1.7340 -10.5893 3.0261 43 1 0.0282 -11.2614 4.9052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960259298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:22 Heat of formation + Delta-G solvation = 82.993650 kcal Electronic energy + Delta-G solvation = -26745.550515 eV Core-core repulsion = 22985.493326 eV Total energy + Delta-G solvation = -3760.057189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28078 -40.13945 -38.81327 -36.10273 -33.94615 -33.09403 -32.41093 -31.12672 -30.03794 -29.73778 -29.01276 -27.35376 -26.03270 -23.34052 -22.35328 -21.69545 -20.96181 -20.22909 -20.03922 -19.42358 -18.24081 -17.40628 -16.88855 -16.08836 -15.62670 -15.32268 -14.79073 -14.66444 -14.41391 -14.27618 -14.24664 -13.66838 -13.46107 -13.30932 -13.09738 -12.90089 -12.84581 -12.73665 -12.61773 -12.14318 -11.52634 -11.31973 -11.05897 -10.99219 -10.81408 -10.69356 -10.54067 -10.35812 -10.11343 -9.86237 -9.71633 -9.42302 -9.02637 -8.84936 -8.78949 -8.30964 -8.06605 -7.07623 -5.82535 -3.12841 1.82081 1.85418 1.90365 2.59459 2.78288 2.87188 3.40953 3.41999 3.47596 3.48170 4.24797 4.45355 4.56293 4.65370 4.79482 5.02401 5.05670 5.12262 5.31495 5.37104 5.45728 5.49927 5.52741 5.57632 5.60586 5.63046 5.81644 5.83726 5.92765 6.02650 6.14080 6.24418 6.33059 6.39515 6.47758 6.52889 6.65189 6.84971 6.92996 6.99738 7.16424 7.25798 7.50440 7.60941 7.64124 7.74226 8.33472 8.47384 9.45557 9.97231 10.32719 11.39265 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.003343 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.155237 B = 8372.964859 C =10131.675147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.704 5.704 10 C 0.208 3.792 11 H 0.062 0.938 12 C -0.093 4.093 13 C -0.090 4.090 14 C -0.129 4.129 15 C -0.132 4.132 16 C -0.115 4.115 17 C -0.095 4.095 18 C -0.086 4.086 19 C 0.139 3.861 20 H 0.106 0.894 21 N -0.715 5.715 22 C 0.515 3.485 23 O -0.523 6.523 24 C -0.061 4.061 25 C 0.087 3.913 26 C -0.267 4.267 27 C 0.051 3.949 28 N -0.479 5.479 29 H 0.438 0.562 30 N -0.258 5.258 31 H 0.257 0.743 32 H 0.388 0.612 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.399 0.601 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.147 0.853 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 -21.578 3.085 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.343 5.343 10 C 0.096 3.904 11 H 0.080 0.920 12 C -0.096 4.096 13 C -0.109 4.109 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.133 4.133 17 C -0.096 4.096 18 C -0.124 4.124 19 C 0.034 3.966 20 H 0.124 0.876 21 N -0.367 5.367 22 C 0.299 3.701 23 O -0.398 6.398 24 C -0.103 4.103 25 C -0.081 4.081 26 C -0.297 4.297 27 C -0.096 4.096 28 N -0.187 5.187 29 H 0.281 0.719 30 N -0.081 5.081 31 H 0.067 0.933 32 H 0.223 0.777 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.233 0.767 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.165 0.835 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.718 -20.294 3.901 21.197 hybrid contribution 0.459 0.187 -0.490 0.697 sum 5.177 -20.107 3.411 21.041 Atomic orbital electron populations 1.69662 1.05155 1.25942 1.56620 1.24768 0.95511 0.97769 1.02352 0.86182 0.78701 0.83693 0.77547 1.21629 1.21696 1.20612 1.19177 0.91003 0.83599 1.43640 0.90970 1.42270 1.05819 0.98847 1.87365 1.19827 0.94523 0.86429 0.89581 0.91994 1.21737 0.93936 0.94053 0.99915 1.20613 0.98170 0.98854 0.93282 1.20963 0.99784 0.97851 0.96075 1.20840 0.96465 0.98717 0.99028 1.20479 0.98843 1.00791 0.93218 1.20538 0.97209 0.97277 0.94557 1.21404 0.97768 1.01044 0.92178 1.21831 0.94195 0.87641 0.92979 0.87602 1.45857 1.12286 1.34345 1.44176 1.20285 0.88582 0.81960 0.79230 1.90753 1.15406 1.70862 1.62792 1.20048 0.96849 0.96177 0.97248 1.21564 0.97489 0.93034 0.96013 1.21380 1.07923 0.94739 1.05629 1.22531 0.98194 0.92679 0.96188 1.46409 1.37391 1.04130 1.30729 0.71855 1.77468 1.10630 1.08920 1.11132 0.93297 0.77750 0.86592 0.86769 0.86865 0.87234 0.89567 0.91089 0.76692 0.86977 0.87171 0.83532 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.70 -17.26 5.15 -53.53 -0.28 -17.53 16 10 C 0.21 4.02 3.10 -68.04 -0.21 3.81 16 11 H 0.06 1.17 8.01 -51.93 -0.42 0.76 16 12 C -0.09 -1.70 5.76 -104.21 -0.60 -2.30 16 13 C -0.09 -1.58 10.04 -39.54 -0.40 -1.98 16 14 C -0.13 -1.97 10.05 -39.62 -0.40 -2.37 16 15 C -0.13 -1.92 10.05 -39.62 -0.40 -2.31 16 16 C -0.12 -1.77 10.04 -39.53 -0.40 -2.16 16 17 C -0.09 -1.61 6.14 -104.20 -0.64 -2.25 16 18 C -0.09 -1.42 6.48 -26.85 -0.17 -1.60 16 19 C 0.14 2.40 2.94 -66.51 -0.20 2.20 16 20 H 0.11 2.13 7.63 -51.93 -0.40 1.73 16 21 N -0.71 -9.83 5.14 -52.42 -0.27 -10.10 16 22 C 0.51 7.49 7.82 -10.99 -0.09 7.40 16 23 O -0.52 -10.02 15.31 5.56 0.09 -9.93 16 24 C -0.06 -0.64 6.28 -29.04 -0.18 -0.82 16 25 C 0.09 1.09 6.01 -82.41 -0.50 0.60 16 26 C -0.27 -2.63 10.72 -40.01 -0.43 -3.06 16 27 C 0.05 0.43 11.99 -17.22 -0.21 0.22 16 28 N -0.48 -4.90 7.36 30.45 0.22 -4.68 16 29 H 0.44 3.07 8.96 -182.60 -1.64 1.44 16 30 N -0.26 -3.73 12.06 33.67 0.41 -3.33 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.39 10.29 7.79 -40.82 -0.32 9.97 16 33 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 34 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 39 H 0.40 4.36 8.58 -40.82 -0.35 4.01 16 40 H 0.11 0.79 8.12 -51.93 -0.42 0.37 16 41 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.15 1.07 8.06 -52.48 -0.42 0.64 16 43 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -36.07 369.77 -10.50 -46.57 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -6.89 Total: 15.00 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -5.05 Total: -11.63 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 0.81 Total: -62.69 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.07 -10.50 -46.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960259298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.567 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds