Wall clock time and date at job start Tue Mar 31 2020 15:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99532 * 2 1 4 4 H 1.48494 * 109.47071 * 270.00176 * 3 2 1 5 5 H 1.48499 * 109.47159 * 30.00018 * 3 2 1 6 6 H 1.48498 * 109.46835 * 149.99935 * 3 2 1 7 7 C 1.38810 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99679 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00111 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99759 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.27408 * 35.62570 * 10 9 7 12 12 C 1.51369 * 110.30441 * 273.54367 * 10 9 7 13 13 C 1.38492 * 130.38793 * 78.14406 * 12 10 9 14 14 C 1.38105 * 120.21736 * 180.02562 * 13 12 10 15 15 C 1.38255 * 119.93360 * 0.02562 * 14 13 12 16 16 C 1.38104 * 119.93360 * 359.97438 * 15 14 13 17 17 C 1.38213 * 109.76141 * 258.17519 * 12 10 9 18 18 C 1.51376 * 109.76044 * 359.97438 * 17 12 10 19 19 C 1.54346 * 105.16602 * 342.81629 * 18 17 12 20 20 H 1.09001 * 110.82114 * 144.57833 * 19 18 17 21 21 N 1.46509 * 110.82418 * 268.11918 * 19 18 17 22 22 C 1.34772 * 119.99992 * 273.55079 * 21 19 18 23 23 O 1.21282 * 120.00052 * 0.02562 * 22 21 19 24 24 C 1.50704 * 119.99976 * 179.97438 * 22 21 19 25 25 C 1.50693 * 109.47336 * 180.02562 * 24 22 21 26 26 C 1.39865 * 125.90317 * 124.99780 * 25 24 22 27 27 C 1.35318 * 107.92346 * 179.97438 * 26 25 24 28 28 N 1.34944 * 107.74689 * 0.02562 * 27 26 25 29 29 H 0.96998 * 126.04006 * 180.02562 * 28 27 26 30 30 N 1.30841 * 125.89500 * 304.69364 * 25 24 22 31 31 H 0.96993 * 120.00438 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99632 * 359.97438 * 9 7 2 33 33 H 1.08003 * 119.89365 * 0.05916 * 13 12 10 34 34 H 1.08005 * 120.03501 * 179.97438 * 14 13 12 35 35 H 1.07995 * 120.03118 * 180.02562 * 15 14 13 36 36 H 1.07998 * 119.89500 * 180.02562 * 16 15 14 37 37 H 1.08993 * 110.30376 * 101.73942 * 18 17 12 38 38 H 1.08999 * 110.30152 * 223.89610 * 18 17 12 39 39 H 0.97005 * 119.99860 * 93.54688 * 21 19 18 40 40 H 1.09002 * 109.46882 * 299.99943 * 24 22 21 41 41 H 1.08994 * 109.47140 * 59.99646 * 24 22 21 42 42 H 1.08008 * 126.03792 * 0.02562 * 26 25 24 43 43 H 1.08000 * 126.12510 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0584 -3.6567 -0.0005 11 1 2.9669 -3.5681 0.5950 12 6 2.3970 -4.0676 -1.4175 13 6 3.3925 -3.6176 -2.2687 14 6 3.5126 -4.1467 -3.5387 15 6 2.6363 -5.1284 -3.9628 16 6 1.6430 -5.5784 -3.1154 17 6 1.5213 -5.0493 -1.8413 18 6 0.5344 -5.3658 -0.7379 19 6 1.1681 -4.7925 0.5474 20 1 0.4018 -4.3967 1.2140 21 7 1.9774 -5.8075 1.2266 22 6 1.3994 -6.6582 2.0976 23 8 0.2093 -6.5838 2.3188 24 6 2.2318 -7.7026 2.7958 25 6 1.3526 -8.5182 3.7082 26 6 1.2225 -9.9107 3.6927 27 6 0.3435 -10.2576 4.6613 28 7 -0.0685 -9.1247 5.2678 29 1 -0.7008 -9.0675 6.0012 30 7 0.5832 -8.0463 4.6555 31 1 -0.4850 0.8399 0.0004 32 1 0.3557 -2.3880 0.0002 33 1 4.0774 -2.8509 -1.9381 34 1 4.2897 -3.7933 -4.2003 35 1 2.7290 -5.5435 -4.9555 36 1 0.9592 -6.3456 -3.4472 37 1 -0.4222 -4.8825 -0.9360 38 1 0.4026 -6.4439 -0.6462 39 1 2.9293 -5.8672 1.0493 40 1 2.6910 -8.3565 2.0543 41 1 3.0105 -7.2145 3.3817 42 1 1.7340 -10.5893 3.0261 43 1 0.0282 -11.2614 4.9052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960259298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:21 Heat of formation + Delta-G solvation = 57.283805 kcal Electronic energy + Delta-G solvation = -26746.665377 eV Core-core repulsion = 22985.493326 eV Total energy + Delta-G solvation = -3761.172051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07471 -41.44787 -40.04014 -37.49814 -35.70264 -34.16753 -33.62087 -32.74840 -31.31509 -30.78229 -30.02692 -28.52826 -27.67369 -25.20787 -23.58687 -22.62846 -22.02916 -21.51494 -21.36699 -20.42404 -19.32734 -18.94484 -18.06882 -17.42338 -17.02649 -16.53074 -16.41209 -15.85065 -15.72010 -15.42414 -15.28958 -15.13941 -14.91282 -14.33001 -14.32082 -14.22089 -14.11683 -13.92493 -13.59602 -13.11756 -13.08531 -12.87092 -12.72814 -12.60166 -12.27770 -12.22430 -11.97555 -11.82303 -11.63036 -11.50692 -11.01609 -10.89288 -10.32480 -10.10570 -9.59917 -9.56355 -9.39088 -9.07253 -7.95967 -5.26520 0.58052 0.62243 1.08106 1.46298 1.48223 1.56288 1.72630 1.78405 2.11435 2.32029 2.57141 2.97310 3.36867 3.43738 3.67307 3.77097 3.94354 4.08597 4.13082 4.15061 4.22331 4.30141 4.34507 4.41360 4.51297 4.59178 4.70681 4.77235 4.82628 4.86465 4.92155 4.94841 5.00081 5.16948 5.23205 5.34206 5.47312 5.55722 5.68163 5.73592 5.75540 5.92723 6.22075 6.26581 6.56101 6.63486 6.83529 7.29859 7.35142 7.99120 8.24194 9.27254 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.003343 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.155237 B = 8372.964859 C =10131.675147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.720 5.720 10 C 0.208 3.792 11 H 0.063 0.937 12 C -0.113 4.113 13 C -0.110 4.110 14 C -0.127 4.127 15 C -0.123 4.123 16 C -0.118 4.118 17 C -0.102 4.102 18 C -0.077 4.077 19 C 0.151 3.849 20 H 0.068 0.932 21 N -0.702 5.702 22 C 0.513 3.487 23 O -0.575 6.575 24 C -0.053 4.053 25 C 0.068 3.932 26 C -0.284 4.284 27 C 0.065 3.935 28 N -0.480 5.480 29 H 0.447 0.553 30 N -0.324 5.324 31 H 0.251 0.749 32 H 0.373 0.627 33 H 0.110 0.890 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.415 0.585 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.173 0.827 43 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.160 -24.284 1.607 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.214 1.214 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.366 4.366 8 H 0.099 0.901 9 N -0.358 5.358 10 C 0.098 3.902 11 H 0.081 0.919 12 C -0.116 4.116 13 C -0.128 4.128 14 C -0.145 4.145 15 C -0.141 4.141 16 C -0.136 4.136 17 C -0.103 4.103 18 C -0.115 4.115 19 C 0.044 3.956 20 H 0.086 0.914 21 N -0.355 5.355 22 C 0.300 3.700 23 O -0.453 6.453 24 C -0.094 4.094 25 C -0.099 4.099 26 C -0.313 4.313 27 C -0.083 4.083 28 N -0.190 5.190 29 H 0.292 0.708 30 N -0.148 5.148 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.128 0.872 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.253 0.747 40 H 0.170 0.830 41 H 0.147 0.853 42 H 0.191 0.809 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.056 -23.051 2.417 24.228 hybrid contribution -0.210 0.853 -0.044 0.880 sum 6.845 -22.198 2.373 23.350 Atomic orbital electron populations 1.69832 1.06764 1.26077 1.59292 1.25575 0.96294 1.01130 1.03564 0.85156 0.77853 0.79482 0.77387 1.21448 1.22535 1.18987 1.19561 0.91466 0.84531 1.41075 0.90127 1.42415 1.05274 1.00258 1.87894 1.19927 0.94184 0.85081 0.90965 0.91892 1.21481 0.95558 0.95670 0.98911 1.20770 0.98255 0.99330 0.94479 1.21302 1.00454 0.97476 0.95285 1.21291 0.95001 0.97519 1.00245 1.20835 0.99401 1.00980 0.92348 1.20594 0.96761 0.97483 0.95460 1.21268 0.97000 1.01399 0.91868 1.21381 0.93396 0.88029 0.92808 0.91362 1.45687 1.12790 1.33258 1.43751 1.21086 0.88342 0.82123 0.78465 1.90734 1.17946 1.72298 1.64313 1.20168 0.96128 0.95375 0.97752 1.22016 0.97456 0.94630 0.95847 1.21794 1.08781 0.93931 1.06771 1.23301 0.96558 0.93737 0.94684 1.46474 1.37390 1.04090 1.31015 0.70763 1.77369 1.12813 1.11526 1.13128 0.94065 0.79539 0.87195 0.83987 0.83199 0.84782 0.91329 0.89876 0.74748 0.82969 0.85254 0.80943 0.76398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.23 -12.94 9.96 84.03 0.84 -12.10 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.72 -36.81 5.15 -323.28 -1.67 -38.47 16 10 C 0.21 8.27 3.10 44.92 0.14 8.41 16 11 H 0.06 2.44 8.01 -2.39 -0.02 2.42 16 12 C -0.11 -4.11 5.76 -19.60 -0.11 -4.22 16 13 C -0.11 -3.71 10.04 22.30 0.22 -3.49 16 14 C -0.13 -3.50 10.05 22.24 0.22 -3.28 16 15 C -0.12 -3.06 10.05 22.24 0.22 -2.84 16 16 C -0.12 -3.27 10.04 22.30 0.22 -3.04 16 17 C -0.10 -3.37 6.14 -19.59 -0.12 -3.49 16 18 C -0.08 -2.60 6.48 30.52 0.20 -2.40 16 19 C 0.15 5.41 2.94 45.91 0.13 5.55 16 20 H 0.07 2.98 7.63 -2.39 -0.02 2.97 16 21 N -0.70 -19.30 5.14 -438.16 -2.25 -21.55 16 22 C 0.51 14.95 7.82 87.66 0.69 15.64 16 23 O -0.57 -22.93 15.31 -3.04 -0.05 -22.97 16 24 C -0.05 -1.02 6.28 29.10 0.18 -0.84 16 25 C 0.07 1.63 6.01 43.10 0.26 1.89 16 26 C -0.28 -4.95 10.72 21.99 0.24 -4.71 16 27 C 0.06 0.92 11.99 83.54 1.00 1.93 16 28 N -0.48 -9.56 7.36 -57.59 -0.42 -9.98 16 29 H 0.45 6.19 8.96 -213.33 -1.91 4.27 16 30 N -0.32 -9.50 12.06 -47.39 -0.57 -10.07 16 31 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.37 20.99 7.79 -92.71 -0.72 20.27 16 33 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.08 2.55 8.09 -2.39 -0.02 2.54 16 39 H 0.42 8.63 8.58 -92.70 -0.80 7.84 16 40 H 0.15 1.63 8.12 -2.39 -0.02 1.61 16 41 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.22 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -82.87 369.77 -0.21 -83.07 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -2.36 Total: 42.51 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 4.80 Total: -10.77 kcal Atomic # 7 Polarization: -135.65 SS G_CDS: -4.63 Total: -140.28 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -82.87 -0.21 -83.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960259298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.358 kcal (2) G-P(sol) polarization free energy of solvation -82.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds