Wall clock time and date at job start Tue Mar 31 2020 14:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 120.00027 * 2 1 4 4 H 1.48493 * 109.47232 * 240.00157 * 3 2 1 5 5 H 1.48508 * 109.47022 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47142 * 119.99603 * 3 2 1 7 7 C 1.38806 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00148 * 170.66436 * 7 2 1 9 9 N 1.36943 * 120.00062 * 350.66674 * 7 2 1 10 10 C 1.48142 * 127.83955 * 164.89914 * 9 7 2 11 11 C 1.54384 * 104.62038 * 140.41430 * 10 9 7 12 12 H 1.09005 * 118.18244 * 244.20318 * 11 10 9 13 13 C 1.54152 * 104.96144 * 23.82965 * 11 10 9 14 14 H 1.09000 * 121.78731 * 222.19741 * 13 11 10 15 15 C 1.51686 * 127.61038 * 345.17361 * 9 7 2 16 16 C 1.52998 * 59.75192 * 114.13804 * 13 11 10 17 17 H 1.09002 * 117.44535 * 252.37457 * 16 13 11 18 18 N 1.46505 * 117.44304 * 107.62179 * 16 13 11 19 19 C 1.34781 * 119.99725 * 154.83313 * 18 16 13 20 20 O 1.21281 * 119.99672 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99638 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.46688 * 180.02562 * 21 19 18 23 23 C 1.39681 * 119.13852 * 89.99950 * 22 21 19 24 24 C 1.35641 * 121.81196 * 179.97438 * 23 22 21 25 25 C 1.41146 * 119.59905 * 359.97438 * 24 23 22 26 26 N 1.32067 * 134.67993 * 179.97438 * 25 24 23 27 27 N 1.39964 * 108.95864 * 180.02562 * 26 25 24 28 28 H 0.96996 * 125.02181 * 179.97438 * 27 26 25 29 29 C 1.33986 * 109.95502 * 0.02562 * 27 26 25 30 30 C 1.38249 * 107.90885 * 0.23728 * 29 27 26 31 31 C 1.35663 * 119.13265 * 269.97601 * 22 21 19 32 32 H 0.97001 * 119.99691 * 0.02562 * 1 2 3 33 33 H 1.09001 * 110.40611 * 21.62792 * 10 9 7 34 34 H 1.09008 * 110.40855 * 259.19994 * 10 9 7 35 35 H 1.09002 * 111.96355 * 100.90662 * 15 9 7 36 36 H 1.09002 * 110.49712 * 337.33299 * 15 9 7 37 37 H 0.96990 * 120.00031 * 334.83562 * 18 16 13 38 38 H 1.08989 * 109.47152 * 59.99884 * 21 19 18 39 39 H 1.09000 * 109.47194 * 299.99372 * 21 19 18 40 40 H 1.07988 * 119.09164 * 359.97258 * 23 22 21 41 41 H 1.07997 * 120.19402 * 179.97438 * 24 23 22 42 42 H 1.08000 * 126.04375 * 179.97438 * 29 27 26 43 43 H 1.08002 * 120.22961 * 359.97438 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0795 -1.2084 -0.1512 9 7 1.3392 -2.3801 0.1934 10 6 1.8228 -3.7553 -0.0707 11 6 1.2861 -4.5908 1.1114 12 1 2.0078 -5.0435 1.7914 13 6 0.0627 -3.8085 1.6287 14 1 -0.1271 -3.6785 2.6941 15 6 -0.0706 -2.5667 0.7211 16 6 -0.1173 -5.1887 0.9934 17 1 -0.5638 -5.2302 -0.0001 18 7 -0.4533 -6.3030 1.8833 19 6 -1.1052 -7.3788 1.3995 20 8 -1.4131 -7.4247 0.2273 21 6 -1.4514 -8.5247 2.3150 22 6 -2.1713 -9.5928 1.5327 23 6 -1.4282 -10.6047 0.9203 24 6 -2.0201 -11.5928 0.2039 25 6 -3.4249 -11.6093 0.0673 26 7 -4.2894 -12.4004 -0.5417 27 7 -5.5829 -11.9101 -0.3285 28 1 -6.3950 -12.3136 -0.6729 29 6 -5.5336 -10.8003 0.4207 30 6 -4.2065 -10.5398 0.7077 31 6 -3.5241 -9.5466 1.4421 32 1 -0.4850 0.8401 -0.0004 33 1 2.9124 -3.7781 -0.0885 34 1 1.4185 -4.1260 -1.0127 35 1 -0.7842 -2.7569 -0.0806 36 1 -0.3771 -1.6996 1.3061 37 1 -0.2067 -6.2664 2.8207 38 1 -2.0948 -8.1662 3.1184 39 1 -0.5372 -8.9397 2.7394 40 1 -0.3530 -10.6002 1.0199 41 1 -1.4201 -12.3622 -0.2591 42 1 -6.3804 -10.2109 0.7399 43 1 -4.0747 -8.7534 1.9260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961055856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:54 Heat of formation + Delta-G solvation = 122.971402 kcal Electronic energy + Delta-G solvation = -25798.908940 eV Core-core repulsion = 22040.585317 eV Total energy + Delta-G solvation = -3758.323623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.47498 -39.85772 -38.42865 -37.28836 -34.30743 -33.00268 -32.53796 -31.34828 -30.47876 -29.95216 -27.29812 -27.09982 -25.51363 -24.19173 -22.27121 -21.27872 -20.92629 -20.46789 -19.98510 -19.18310 -18.43779 -16.99262 -16.94488 -16.78174 -16.32808 -15.39089 -15.37471 -15.09774 -14.65510 -14.28047 -14.11396 -13.93533 -13.58353 -13.31468 -13.15277 -12.73662 -12.25956 -12.20087 -12.08643 -11.84847 -11.64844 -11.43440 -11.41218 -10.98822 -10.79965 -10.54684 -10.50086 -10.41804 -10.19568 -10.13582 -9.75705 -9.64638 -9.18217 -8.92945 -8.72338 -8.29334 -7.77204 -6.86038 -5.77328 -3.10275 0.41171 1.60191 2.22131 2.43238 2.71492 3.18438 3.40505 3.44676 3.45874 3.73034 4.01731 4.34213 4.37739 4.48679 4.58028 4.82907 4.91382 4.94001 5.12337 5.18373 5.23078 5.34635 5.37451 5.41223 5.44985 5.48584 5.58323 5.81903 5.92100 5.95407 6.17404 6.23076 6.26352 6.27736 6.50477 6.55532 6.68416 6.71700 6.78381 6.84772 6.91980 7.32401 7.33827 7.52626 7.64250 7.71177 8.16750 8.36827 9.08243 9.74771 10.51759 11.37707 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.001975 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.637875 B =14171.570639 C =14512.461153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.158 3.842 11 C -0.183 4.183 12 H 0.102 0.898 13 C -0.179 4.179 14 H 0.101 0.899 15 C 0.185 3.815 16 C 0.096 3.904 17 H 0.130 0.870 18 N -0.701 5.701 19 C 0.513 3.487 20 O -0.528 6.528 21 C -0.097 4.097 22 C -0.099 4.099 23 C -0.054 4.054 24 C -0.108 4.108 25 C 0.107 3.893 26 N -0.312 5.312 27 N -0.429 5.429 28 H 0.442 0.558 29 C 0.082 3.918 30 C -0.203 4.203 31 C -0.028 4.028 32 H 0.254 0.746 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.032 0.968 36 H 0.091 0.909 37 H 0.398 0.602 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.188 0.812 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.776 -23.314 7.818 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.323 5.323 10 C 0.031 3.969 11 C -0.204 4.204 12 H 0.120 0.880 13 C -0.200 4.200 14 H 0.119 0.881 15 C 0.061 3.939 16 C -0.010 4.010 17 H 0.148 0.852 18 N -0.350 5.350 19 C 0.299 3.701 20 O -0.404 6.404 21 C -0.137 4.137 22 C -0.101 4.101 23 C -0.077 4.077 24 C -0.129 4.129 25 C -0.047 4.047 26 N -0.140 5.140 27 N -0.129 5.129 28 H 0.287 0.713 29 C -0.075 4.075 30 C -0.212 4.212 31 C -0.049 4.049 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.109 0.891 37 H 0.232 0.768 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.205 0.795 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.163 -24.159 6.174 26.927 hybrid contribution 0.182 1.472 0.858 1.713 sum -9.981 -22.687 7.032 25.764 Atomic orbital electron populations 1.69880 1.05026 1.25466 1.56004 1.24873 0.95648 0.97901 1.02027 0.86194 0.78524 0.83029 0.77970 1.21028 1.21586 1.21155 1.18965 0.90780 0.82472 1.43033 0.90596 1.46031 1.12420 0.99737 1.74136 1.21062 0.97069 0.85856 0.92889 1.24351 0.90536 1.02483 1.03051 0.87962 1.24560 1.02487 0.92552 1.00393 0.88090 1.21668 0.86415 0.92293 0.93552 1.21855 0.98393 0.85040 0.95672 0.85194 1.45428 1.58773 1.18215 1.12567 1.20572 0.77571 0.82965 0.89018 1.90741 1.52560 1.79760 1.17321 1.20650 1.02211 0.93146 0.97721 1.18623 0.93100 0.96557 1.01771 1.20514 0.99720 0.92604 0.94863 1.19796 0.89560 1.00931 1.02659 1.20973 0.94885 0.92984 0.95812 1.77666 0.86650 1.22563 1.27129 1.46297 1.08960 1.19787 1.37833 0.71350 1.22705 0.98354 0.90634 0.95803 1.19570 0.91777 1.01100 1.08788 1.20030 0.93372 0.95515 0.95950 0.93544 0.93046 0.95652 0.95046 0.89072 0.76823 0.88066 0.88017 0.85633 0.85393 0.79509 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.84 55.49 0.60 -26.28 16 2 C -0.01 -0.21 5.41 -17.43 -0.09 -0.31 16 3 Si 0.91 21.95 29.56 -169.99 -5.03 16.93 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -6.27 10.36 -15.06 -0.16 -6.42 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 N -0.60 -15.41 3.45 -165.83 -0.57 -15.98 16 10 C 0.16 3.37 7.05 -2.41 -0.02 3.35 16 11 C -0.18 -3.23 7.05 -89.29 -0.63 -3.86 16 12 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 13 C -0.18 -3.31 6.96 -89.29 -0.62 -3.93 16 14 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 15 C 0.19 4.43 5.91 -0.38 0.00 4.43 16 16 C 0.10 1.60 5.97 -67.93 -0.41 1.20 16 17 H 0.13 2.51 7.40 -51.93 -0.38 2.12 16 18 N -0.70 -8.82 5.56 -53.80 -0.30 -9.12 16 19 C 0.51 6.69 7.82 -10.98 -0.09 6.61 16 20 O -0.53 -9.42 15.60 5.56 0.09 -9.34 16 21 C -0.10 -0.83 5.78 -29.03 -0.17 -1.00 16 22 C -0.10 -1.03 4.33 -105.00 -0.45 -1.49 16 23 C -0.05 -0.57 9.51 -39.97 -0.38 -0.95 16 24 C -0.11 -1.22 10.08 -39.41 -0.40 -1.62 16 25 C 0.11 1.33 7.49 -83.05 -0.62 0.70 16 26 N -0.31 -3.71 12.70 33.25 0.42 -3.28 16 27 N -0.43 -3.30 7.18 30.84 0.22 -3.08 16 28 H 0.44 1.62 8.96 -182.70 -1.64 -0.01 16 29 C 0.08 0.61 12.07 -16.61 -0.20 0.41 16 30 C -0.20 -2.18 6.33 -105.19 -0.67 -2.85 16 31 C -0.03 -0.29 9.66 -39.41 -0.38 -0.67 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 2.41 6.58 -51.93 -0.34 2.06 16 37 H 0.40 3.72 8.83 -40.82 -0.36 3.36 16 38 H 0.10 0.62 8.06 -51.94 -0.42 0.20 16 39 H 0.10 0.62 8.07 -51.93 -0.42 0.20 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.19 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -36.90 365.03 -11.26 -48.16 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.91 Total: 2.89 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -5.28 Total: -6.40 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.37 Total: -57.74 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.90 -11.26 -48.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961055856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.131 kcal (2) G-P(sol) polarization free energy of solvation -36.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds