Wall clock time and date at job start Tue Mar 31 2020 14:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 120.00027 * 2 1 4 4 H 1.48493 * 109.47232 * 240.00157 * 3 2 1 5 5 H 1.48508 * 109.47022 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47142 * 119.99603 * 3 2 1 7 7 C 1.38806 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00148 * 170.66436 * 7 2 1 9 9 N 1.36943 * 120.00062 * 350.66674 * 7 2 1 10 10 C 1.48142 * 127.83955 * 164.89914 * 9 7 2 11 11 C 1.54384 * 104.62038 * 140.41430 * 10 9 7 12 12 H 1.09005 * 118.18244 * 244.20318 * 11 10 9 13 13 C 1.54152 * 104.96144 * 23.82965 * 11 10 9 14 14 H 1.09000 * 121.78731 * 222.19741 * 13 11 10 15 15 C 1.51686 * 127.61038 * 345.17361 * 9 7 2 16 16 C 1.52998 * 59.75192 * 114.13804 * 13 11 10 17 17 H 1.09002 * 117.44535 * 252.37457 * 16 13 11 18 18 N 1.46505 * 117.44304 * 107.62179 * 16 13 11 19 19 C 1.34781 * 119.99725 * 154.83313 * 18 16 13 20 20 O 1.21281 * 119.99672 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99638 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.46688 * 180.02562 * 21 19 18 23 23 C 1.39681 * 119.13852 * 89.99950 * 22 21 19 24 24 C 1.35641 * 121.81196 * 179.97438 * 23 22 21 25 25 C 1.41146 * 119.59905 * 359.97438 * 24 23 22 26 26 N 1.32067 * 134.67993 * 179.97438 * 25 24 23 27 27 N 1.39964 * 108.95864 * 180.02562 * 26 25 24 28 28 H 0.96996 * 125.02181 * 179.97438 * 27 26 25 29 29 C 1.33986 * 109.95502 * 0.02562 * 27 26 25 30 30 C 1.38249 * 107.90885 * 0.23728 * 29 27 26 31 31 C 1.35663 * 119.13265 * 269.97601 * 22 21 19 32 32 H 0.97001 * 119.99691 * 0.02562 * 1 2 3 33 33 H 1.09001 * 110.40611 * 21.62792 * 10 9 7 34 34 H 1.09008 * 110.40855 * 259.19994 * 10 9 7 35 35 H 1.09002 * 111.96355 * 100.90662 * 15 9 7 36 36 H 1.09002 * 110.49712 * 337.33299 * 15 9 7 37 37 H 0.96990 * 120.00031 * 334.83562 * 18 16 13 38 38 H 1.08989 * 109.47152 * 59.99884 * 21 19 18 39 39 H 1.09000 * 109.47194 * 299.99372 * 21 19 18 40 40 H 1.07988 * 119.09164 * 359.97258 * 23 22 21 41 41 H 1.07997 * 120.19402 * 179.97438 * 24 23 22 42 42 H 1.08000 * 126.04375 * 179.97438 * 29 27 26 43 43 H 1.08002 * 120.22961 * 359.97438 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0795 -1.2084 -0.1512 9 7 1.3392 -2.3801 0.1934 10 6 1.8228 -3.7553 -0.0707 11 6 1.2861 -4.5908 1.1114 12 1 2.0078 -5.0435 1.7914 13 6 0.0627 -3.8085 1.6287 14 1 -0.1271 -3.6785 2.6941 15 6 -0.0706 -2.5667 0.7211 16 6 -0.1173 -5.1887 0.9934 17 1 -0.5638 -5.2302 -0.0001 18 7 -0.4533 -6.3030 1.8833 19 6 -1.1052 -7.3788 1.3995 20 8 -1.4131 -7.4247 0.2273 21 6 -1.4514 -8.5247 2.3150 22 6 -2.1713 -9.5928 1.5327 23 6 -1.4282 -10.6047 0.9203 24 6 -2.0201 -11.5928 0.2039 25 6 -3.4249 -11.6093 0.0673 26 7 -4.2894 -12.4004 -0.5417 27 7 -5.5829 -11.9101 -0.3285 28 1 -6.3950 -12.3136 -0.6729 29 6 -5.5336 -10.8003 0.4207 30 6 -4.2065 -10.5398 0.7077 31 6 -3.5241 -9.5466 1.4421 32 1 -0.4850 0.8401 -0.0004 33 1 2.9124 -3.7781 -0.0885 34 1 1.4185 -4.1260 -1.0127 35 1 -0.7842 -2.7569 -0.0806 36 1 -0.3771 -1.6996 1.3061 37 1 -0.2067 -6.2664 2.8207 38 1 -2.0948 -8.1662 3.1184 39 1 -0.5372 -8.9397 2.7394 40 1 -0.3530 -10.6002 1.0199 41 1 -1.4201 -12.3622 -0.2591 42 1 -6.3804 -10.2109 0.7399 43 1 -4.0747 -8.7534 1.9260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961055856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:53 Heat of formation + Delta-G solvation = 97.158424 kcal Electronic energy + Delta-G solvation = -25800.028275 eV Core-core repulsion = 22040.585317 eV Total energy + Delta-G solvation = -3759.442958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16437 -41.02954 -39.78135 -38.14094 -35.89871 -34.29596 -33.62852 -32.27833 -31.80243 -30.96896 -28.88906 -28.19764 -27.25982 -24.97593 -23.66891 -22.40984 -21.87631 -21.62469 -21.11994 -20.75667 -19.07726 -18.83525 -17.91972 -17.77352 -17.45451 -16.71780 -16.23503 -16.19483 -15.81042 -15.51370 -15.18251 -15.07599 -14.78946 -14.65393 -14.57096 -13.94661 -13.68852 -13.33114 -13.25858 -12.94745 -12.83394 -12.74468 -12.65493 -12.57153 -12.29794 -12.13660 -12.03571 -11.79961 -11.58964 -11.28106 -11.24115 -10.90425 -10.78182 -10.64501 -9.65895 -9.61075 -8.91770 -8.50253 -7.89655 -5.25112 -0.26205 0.83954 1.47689 1.50784 1.51338 1.57564 1.70309 1.90101 2.12931 2.50514 2.91846 2.93614 3.31325 3.33690 3.56562 3.79976 3.85696 3.88445 3.97794 4.10373 4.18661 4.25899 4.28737 4.41672 4.51157 4.55992 4.61602 4.68191 4.78253 4.83752 4.88916 4.99191 5.00937 5.26627 5.31267 5.43405 5.46968 5.49802 5.53504 5.62285 5.66863 5.77212 5.99964 6.14185 6.30371 6.62424 6.68879 6.97097 7.40152 7.66719 8.46815 9.24754 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.001975 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.637875 B =14171.570639 C =14512.461153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.982 3.018 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.239 4.239 8 H 0.082 0.918 9 N -0.623 5.623 10 C 0.150 3.850 11 C -0.167 4.167 12 H 0.137 0.863 13 C -0.177 4.177 14 H 0.128 0.872 15 C 0.187 3.813 16 C 0.119 3.881 17 H 0.099 0.901 18 N -0.685 5.685 19 C 0.512 3.488 20 O -0.582 6.582 21 C -0.083 4.083 22 C -0.123 4.123 23 C -0.055 4.055 24 C -0.137 4.137 25 C 0.081 3.919 26 N -0.357 5.357 27 N -0.417 5.417 28 H 0.459 0.541 29 C 0.111 3.889 30 C -0.239 4.239 31 C -0.028 4.028 32 H 0.250 0.750 33 H 0.062 0.938 34 H 0.013 0.987 35 H 0.002 0.998 36 H 0.061 0.939 37 H 0.420 0.580 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.131 0.869 42 H 0.237 0.763 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.802 -24.037 10.226 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.024 3.976 11 C -0.188 4.188 12 H 0.155 0.845 13 C -0.197 4.197 14 H 0.146 0.854 15 C 0.062 3.938 16 C 0.011 3.989 17 H 0.117 0.883 18 N -0.336 5.336 19 C 0.301 3.699 20 O -0.461 6.461 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.078 4.078 24 C -0.159 4.159 25 C -0.071 4.071 26 N -0.186 5.186 27 N -0.119 5.119 28 H 0.306 0.694 29 C -0.048 4.048 30 C -0.249 4.249 31 C -0.049 4.049 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.020 0.980 36 H 0.079 0.921 37 H 0.258 0.742 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.159 0.841 41 H 0.148 0.852 42 H 0.253 0.747 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.174 -24.945 8.615 28.284 hybrid contribution 0.070 1.640 0.016 1.642 sum -10.104 -23.305 8.631 26.827 Atomic orbital electron populations 1.70086 1.06516 1.25776 1.57357 1.25741 0.96531 1.01287 1.02334 0.85114 0.77158 0.78482 0.78319 1.20313 1.22032 1.20058 1.19372 0.91363 0.83694 1.42352 0.90076 1.46371 1.12994 1.00827 1.74662 1.21199 0.97788 0.84579 0.94042 1.24253 0.91164 1.01870 1.01510 0.84508 1.24241 1.03845 0.91079 1.00574 0.85377 1.21414 0.85390 0.93822 0.93174 1.21323 0.97215 0.85376 0.94990 0.88297 1.45236 1.58490 1.16785 1.13055 1.21444 0.76061 0.83483 0.88886 1.90737 1.54555 1.80762 1.20004 1.20675 1.04131 0.90510 0.96858 1.18888 0.93522 0.97263 1.02816 1.20794 1.00647 0.92254 0.94083 1.20002 0.89795 1.01986 1.04074 1.21307 0.95597 0.93867 0.96355 1.77572 0.88137 1.24017 1.28906 1.46356 1.08604 1.19733 1.37197 0.69384 1.23471 0.98621 0.89602 0.93121 1.20012 0.93142 1.01579 1.10184 1.20382 0.93760 0.95514 0.95205 0.94133 0.91972 0.96928 0.98015 0.92103 0.74245 0.84752 0.84836 0.84059 0.85159 0.74710 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.42 10.84 21.65 0.23 -57.19 16 2 C -0.07 -3.74 5.41 84.86 0.46 -3.28 16 3 Si 0.98 45.59 29.56 68.60 2.03 47.62 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.24 -13.52 10.36 84.03 0.87 -12.65 16 8 H 0.08 4.37 7.85 -2.91 -0.02 4.34 16 9 N -0.62 -32.64 3.45 -678.58 -2.34 -34.98 16 10 C 0.15 6.35 7.05 86.53 0.61 6.96 16 11 C -0.17 -5.55 7.05 -9.93 -0.07 -5.62 16 12 H 0.14 3.68 8.14 -2.38 -0.02 3.66 16 13 C -0.18 -6.31 6.96 -9.93 -0.07 -6.38 16 14 H 0.13 3.91 8.14 -2.39 -0.02 3.89 16 15 C 0.19 9.21 5.91 85.82 0.51 9.71 16 16 C 0.12 3.77 5.97 44.99 0.27 4.04 16 17 H 0.10 3.88 7.40 -2.39 -0.02 3.86 16 18 N -0.68 -15.01 5.56 -442.52 -2.46 -17.47 16 19 C 0.51 12.07 7.82 87.66 0.69 12.76 16 20 O -0.58 -20.37 15.60 -3.03 -0.05 -20.42 16 21 C -0.08 -1.10 5.78 29.10 0.17 -0.93 16 22 C -0.12 -2.34 4.33 -20.11 -0.09 -2.43 16 23 C -0.06 -1.13 9.51 22.02 0.21 -0.92 16 24 C -0.14 -3.19 10.08 22.38 0.23 -2.96 16 25 C 0.08 2.04 7.49 42.16 0.32 2.36 16 26 N -0.36 -8.60 12.70 -48.70 -0.62 -9.21 16 27 N -0.42 -5.87 7.18 -56.34 -0.40 -6.28 16 28 H 0.46 2.61 8.96 -213.41 -1.91 0.70 16 29 C 0.11 1.36 12.07 84.37 1.02 2.38 16 30 C -0.24 -4.87 6.33 -20.23 -0.13 -4.99 16 31 C -0.03 -0.53 9.66 22.38 0.22 -0.32 16 32 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 33 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.01 0.57 8.14 -2.38 -0.02 0.56 16 35 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.06 3.34 6.58 -2.39 -0.02 3.33 16 37 H 0.42 5.81 8.83 -92.72 -0.82 4.99 16 38 H 0.13 0.95 8.06 -2.39 -0.02 0.93 16 39 H 0.13 0.98 8.07 -2.39 -0.02 0.96 16 40 H 0.14 2.21 8.06 -2.92 -0.02 2.18 16 41 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 42 H 0.24 0.35 8.06 -2.91 -0.02 0.32 16 43 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -85.69 365.03 -0.07 -85.76 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -1.67 Total: 14.43 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.20 Total: -2.26 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -5.59 Total: -125.14 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.05 Total: -20.42 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -85.69 -0.07 -85.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961055856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.923 kcal (2) G-P(sol) polarization free energy of solvation -85.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds