Wall clock time and date at job start Tue Mar 31 2020 15:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00133 * 2 1 4 4 H 1.48500 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46989 * 299.99688 * 3 2 1 6 6 H 1.48497 * 109.47046 * 59.99827 * 3 2 1 7 7 C 1.38815 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00011 * 170.57265 * 7 2 1 9 9 N 1.36935 * 120.00285 * 350.57156 * 7 2 1 10 10 C 1.48145 * 127.84150 * 164.35291 * 9 7 2 11 11 C 1.57741 * 104.61837 * 139.76714 * 10 9 7 12 12 H 1.09002 * 120.32714 * 244.67845 * 11 10 9 13 13 C 1.54144 * 103.42840 * 24.77530 * 11 10 9 14 14 H 1.08999 * 121.79414 * 220.63921 * 13 11 10 15 15 C 1.48148 * 127.83651 * 344.35748 * 9 7 2 16 16 C 1.52993 * 116.08564 * 87.40696 * 11 10 9 17 17 H 1.09005 * 117.43725 * 16.83194 * 16 11 10 18 18 N 1.46494 * 117.44438 * 161.57563 * 16 11 10 19 19 C 1.34774 * 120.00088 * 224.00213 * 18 16 11 20 20 O 1.21284 * 120.00122 * 0.02562 * 19 18 16 21 21 C 1.50707 * 120.00234 * 180.02562 * 19 18 16 22 22 N 1.46496 * 109.47350 * 180.02562 * 21 19 18 23 23 C 1.33987 * 125.02426 * 124.99861 * 22 21 19 24 24 C 1.38247 * 107.90859 * 180.02562 * 23 22 21 25 25 C 1.41129 * 134.81648 * 180.27318 * 24 23 22 26 26 C 1.35652 * 119.53197 * 180.16951 * 25 24 23 27 27 C 1.39679 * 121.73056 * 359.49436 * 26 25 24 28 28 C 1.35641 * 121.81369 * 0.28202 * 27 26 25 29 29 C 1.41156 * 119.59844 * 359.97438 * 28 27 26 30 30 N 1.32056 * 134.68138 * 180.02562 * 29 28 27 31 31 H 0.96996 * 119.99964 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.40651 * 259.20264 * 10 9 7 33 33 H 1.09001 * 110.40474 * 21.51771 * 10 9 7 34 34 H 1.09005 * 110.40594 * 100.79598 * 15 9 7 35 35 H 1.09000 * 110.50840 * 338.42005 * 15 9 7 36 36 H 0.96998 * 120.00316 * 44.00957 * 18 16 11 37 37 H 1.09003 * 109.46602 * 59.99828 * 21 19 18 38 38 H 1.09003 * 109.46532 * 300.00404 * 21 19 18 39 39 H 1.08003 * 126.04202 * 0.04413 * 23 22 21 40 40 H 1.07995 * 120.23398 * 359.92220 * 25 24 23 41 41 H 1.08001 * 119.13162 * 179.77775 * 26 25 24 42 42 H 1.07999 * 119.09587 * 180.25919 * 27 26 25 43 43 H 1.08007 * 120.19892 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0793 -1.2086 -0.1527 9 7 1.3395 -2.3800 0.1953 10 6 1.8186 -3.7548 -0.0787 11 6 1.2952 -4.6090 1.1397 12 1 1.9999 -5.0706 1.8315 13 6 0.0731 -3.8119 1.6371 14 1 -0.1327 -3.6797 2.6992 15 6 -0.0301 -2.5685 0.7278 16 6 -0.1132 -5.1898 0.9985 17 1 -0.5437 -5.2255 -0.0022 18 7 -0.4775 -6.2999 1.8823 19 6 -1.1344 -7.3676 1.3875 20 8 -1.4235 -7.4096 0.2103 21 6 -1.5097 -8.5093 2.2967 22 7 -2.2095 -9.5389 1.5245 23 6 -1.8518 -10.8286 1.4610 24 6 -2.7515 -11.4792 0.6373 25 6 -2.9102 -12.8088 0.1913 26 6 -3.9342 -13.1162 -0.6435 27 6 -4.8495 -12.1511 -1.0700 28 6 -4.7586 -10.8562 -0.6764 29 6 -3.7149 -10.4619 0.1882 30 7 -3.3506 -9.3207 0.7440 31 1 -0.4850 0.8400 -0.0004 32 1 1.4048 -4.1213 -1.0181 33 1 2.9079 -3.7787 -0.1090 34 1 -0.7326 -2.7497 -0.0857 35 1 -0.3375 -1.6981 1.3076 36 1 -0.2461 -6.2664 2.8237 37 1 -2.1620 -8.1430 3.0895 38 1 -0.6077 -8.9354 2.7361 39 1 -1.0097 -11.2800 1.9646 40 1 -2.2189 -13.5751 0.5092 41 1 -4.0475 -14.1350 -0.9837 42 1 -5.6513 -12.4438 -1.7316 43 1 -5.4806 -10.1313 -1.0225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962321449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:46 Heat of formation + Delta-G solvation = 138.180194 kcal Electronic energy + Delta-G solvation = -25832.124233 eV Core-core repulsion = 22074.460112 eV Total energy + Delta-G solvation = -3757.664121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51932 -39.87663 -38.38138 -37.30509 -34.58580 -33.23144 -32.60375 -31.90697 -30.36855 -28.96563 -28.09028 -27.06909 -25.64070 -23.66511 -22.16134 -21.85735 -20.80448 -20.67439 -20.25921 -19.37081 -17.70325 -17.36747 -17.12828 -16.86051 -16.28527 -15.86348 -15.57386 -14.90626 -14.73988 -14.28108 -14.15645 -13.90228 -13.61694 -13.32339 -13.28236 -13.03004 -12.78406 -12.31253 -12.08007 -11.82565 -11.64236 -11.55949 -11.53652 -11.02914 -10.88089 -10.48677 -10.42197 -10.37530 -10.28407 -10.17581 -10.00910 -9.78052 -9.30530 -8.80533 -8.78441 -8.43419 -7.76843 -6.91684 -5.83864 -3.18415 0.44747 1.69190 1.90515 2.28619 2.36669 2.92117 3.35353 3.41304 3.43984 3.73620 3.93266 4.21550 4.24764 4.38891 4.43832 4.52887 4.61239 4.80172 4.93548 5.08110 5.14055 5.25151 5.29038 5.33513 5.39281 5.51340 5.53538 5.66786 5.79496 5.93995 6.03458 6.13865 6.31412 6.35914 6.43526 6.44398 6.51357 6.63445 6.69879 6.76138 6.82401 7.28964 7.36551 7.48760 7.49854 7.67489 8.05918 8.15600 9.06526 9.69304 10.45846 11.30609 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032836 B = 0.001958 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.518401 B =14296.007962 C =14631.365139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.157 3.843 11 C -0.184 4.184 12 H 0.107 0.893 13 C -0.177 4.177 14 H 0.102 0.898 15 C 0.185 3.815 16 C 0.093 3.907 17 H 0.132 0.868 18 N -0.695 5.695 19 C 0.501 3.499 20 O -0.503 6.503 21 C 0.105 3.895 22 N -0.309 5.309 23 C 0.072 3.928 24 C -0.206 4.206 25 C -0.044 4.044 26 C -0.158 4.158 27 C -0.085 4.085 28 C -0.096 4.096 29 C 0.094 3.906 30 N -0.270 5.270 31 H 0.255 0.745 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.027 0.973 35 H 0.091 0.909 36 H 0.399 0.601 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.185 0.815 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 -25.912 7.659 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.030 3.970 11 C -0.205 4.205 12 H 0.125 0.875 13 C -0.199 4.199 14 H 0.120 0.880 15 C 0.059 3.941 16 C -0.012 4.012 17 H 0.149 0.851 18 N -0.345 5.345 19 C 0.284 3.716 20 O -0.376 6.376 21 C -0.020 4.020 22 N -0.083 5.083 23 C -0.082 4.082 24 C -0.215 4.215 25 C -0.065 4.065 26 C -0.177 4.177 27 C -0.108 4.108 28 C -0.117 4.117 29 C -0.061 4.061 30 N -0.095 5.095 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.202 0.798 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.099 -24.222 6.963 25.714 hybrid contribution 0.864 0.075 0.659 1.089 sum -4.235 -24.148 7.622 25.674 Atomic orbital electron populations 1.69909 1.05074 1.25428 1.55588 1.24923 0.95663 0.98068 1.01649 0.86027 0.78860 0.83431 0.77306 1.20337 1.21629 1.21604 1.19031 0.90910 0.82240 1.43417 0.90426 1.45129 1.13686 0.99975 1.72770 1.21709 0.97236 0.85703 0.92359 1.25092 0.90314 1.02097 1.03030 0.87502 1.24624 1.02269 0.92406 1.00575 0.88003 1.21071 0.87045 0.92426 0.93597 1.21917 0.98655 0.85019 0.95614 0.85051 1.45276 1.58163 1.18626 1.12413 1.20251 0.78858 0.83385 0.89126 1.90838 1.51785 1.78764 1.16224 1.21717 0.98753 0.88218 0.93353 1.48014 1.20441 1.06133 1.33745 1.22588 1.00314 0.84592 1.00721 1.19554 0.99810 0.95917 1.06253 1.20191 0.97273 0.92936 0.96072 1.20493 0.96734 0.99467 1.01020 1.20622 0.98708 0.92529 0.98892 1.19922 0.97004 0.96422 0.98335 1.21027 0.96595 0.90489 0.97956 1.77922 1.00095 1.19558 1.11959 0.93515 0.95175 0.93069 0.95542 0.89069 0.76677 0.85872 0.85148 0.79817 0.86108 0.86244 0.85802 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.71 10.88 55.49 0.60 -26.10 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.78 29.56 -169.99 -5.03 16.76 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 8 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 9 N -0.59 -15.07 3.38 -166.70 -0.56 -15.63 16 10 C 0.16 3.28 7.10 -0.54 0.00 3.28 16 11 C -0.18 -3.13 7.33 -87.43 -0.64 -3.77 16 12 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 13 C -0.18 -3.22 6.97 -89.29 -0.62 -3.85 16 14 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 15 C 0.18 4.40 5.69 -2.41 -0.01 4.39 16 16 C 0.09 1.52 5.93 -67.94 -0.40 1.12 16 17 H 0.13 2.54 7.40 -51.93 -0.38 2.15 16 18 N -0.69 -8.23 5.56 -53.81 -0.30 -8.53 16 19 C 0.50 6.45 7.85 -10.98 -0.09 6.37 16 20 O -0.50 -9.33 15.23 5.55 0.08 -9.25 16 21 C 0.11 0.84 6.93 -5.19 -0.04 0.80 16 22 N -0.31 -3.55 3.36 -62.00 -0.21 -3.76 16 23 C 0.07 0.67 11.45 -16.61 -0.19 0.48 16 24 C -0.21 -2.33 6.33 -105.19 -0.67 -3.00 16 25 C -0.04 -0.40 10.09 -39.41 -0.40 -0.80 16 26 C -0.16 -1.36 9.90 -39.97 -0.40 -1.75 16 27 C -0.08 -0.79 9.89 -39.97 -0.40 -1.19 16 28 C -0.10 -1.13 10.08 -39.40 -0.40 -1.53 16 29 C 0.09 1.31 7.49 -83.05 -0.62 0.69 16 30 N -0.27 -4.15 11.54 33.25 0.38 -3.77 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 2.41 6.53 -51.93 -0.34 2.07 16 36 H 0.40 3.20 8.83 -40.82 -0.36 2.84 16 37 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.13 0.42 8.04 -51.93 -0.42 0.00 16 39 H 0.18 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -37.37 365.73 -10.33 -47.70 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.70 Total: 2.53 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -5.12 Total: -5.47 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.08 Total: -57.79 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.37 -10.33 -47.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962321449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.883 kcal (2) G-P(sol) polarization free energy of solvation -37.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds