Wall clock time and date at job start Tue Mar 31 2020 15:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00133 * 2 1 4 4 H 1.48500 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46989 * 299.99688 * 3 2 1 6 6 H 1.48497 * 109.47046 * 59.99827 * 3 2 1 7 7 C 1.38815 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00011 * 170.57265 * 7 2 1 9 9 N 1.36935 * 120.00285 * 350.57156 * 7 2 1 10 10 C 1.48145 * 127.84150 * 164.35291 * 9 7 2 11 11 C 1.57741 * 104.61837 * 139.76714 * 10 9 7 12 12 H 1.09002 * 120.32714 * 244.67845 * 11 10 9 13 13 C 1.54144 * 103.42840 * 24.77530 * 11 10 9 14 14 H 1.08999 * 121.79414 * 220.63921 * 13 11 10 15 15 C 1.48148 * 127.83651 * 344.35748 * 9 7 2 16 16 C 1.52993 * 116.08564 * 87.40696 * 11 10 9 17 17 H 1.09005 * 117.43725 * 16.83194 * 16 11 10 18 18 N 1.46494 * 117.44438 * 161.57563 * 16 11 10 19 19 C 1.34774 * 120.00088 * 224.00213 * 18 16 11 20 20 O 1.21284 * 120.00122 * 0.02562 * 19 18 16 21 21 C 1.50707 * 120.00234 * 180.02562 * 19 18 16 22 22 N 1.46496 * 109.47350 * 180.02562 * 21 19 18 23 23 C 1.33987 * 125.02426 * 124.99861 * 22 21 19 24 24 C 1.38247 * 107.90859 * 180.02562 * 23 22 21 25 25 C 1.41129 * 134.81648 * 180.27318 * 24 23 22 26 26 C 1.35652 * 119.53197 * 180.16951 * 25 24 23 27 27 C 1.39679 * 121.73056 * 359.49436 * 26 25 24 28 28 C 1.35641 * 121.81369 * 0.28202 * 27 26 25 29 29 C 1.41156 * 119.59844 * 359.97438 * 28 27 26 30 30 N 1.32056 * 134.68138 * 180.02562 * 29 28 27 31 31 H 0.96996 * 119.99964 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.40651 * 259.20264 * 10 9 7 33 33 H 1.09001 * 110.40474 * 21.51771 * 10 9 7 34 34 H 1.09005 * 110.40594 * 100.79598 * 15 9 7 35 35 H 1.09000 * 110.50840 * 338.42005 * 15 9 7 36 36 H 0.96998 * 120.00316 * 44.00957 * 18 16 11 37 37 H 1.09003 * 109.46602 * 59.99828 * 21 19 18 38 38 H 1.09003 * 109.46532 * 300.00404 * 21 19 18 39 39 H 1.08003 * 126.04202 * 0.04413 * 23 22 21 40 40 H 1.07995 * 120.23398 * 359.92220 * 25 24 23 41 41 H 1.08001 * 119.13162 * 179.77775 * 26 25 24 42 42 H 1.07999 * 119.09587 * 180.25919 * 27 26 25 43 43 H 1.08007 * 120.19892 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0793 -1.2086 -0.1527 9 7 1.3395 -2.3800 0.1953 10 6 1.8186 -3.7548 -0.0787 11 6 1.2952 -4.6090 1.1397 12 1 1.9999 -5.0706 1.8315 13 6 0.0731 -3.8119 1.6371 14 1 -0.1327 -3.6797 2.6992 15 6 -0.0301 -2.5685 0.7278 16 6 -0.1132 -5.1898 0.9985 17 1 -0.5437 -5.2255 -0.0022 18 7 -0.4775 -6.2999 1.8823 19 6 -1.1344 -7.3676 1.3875 20 8 -1.4235 -7.4096 0.2103 21 6 -1.5097 -8.5093 2.2967 22 7 -2.2095 -9.5389 1.5245 23 6 -1.8518 -10.8286 1.4610 24 6 -2.7515 -11.4792 0.6373 25 6 -2.9102 -12.8088 0.1913 26 6 -3.9342 -13.1162 -0.6435 27 6 -4.8495 -12.1511 -1.0700 28 6 -4.7586 -10.8562 -0.6764 29 6 -3.7149 -10.4619 0.1882 30 7 -3.3506 -9.3207 0.7440 31 1 -0.4850 0.8400 -0.0004 32 1 1.4048 -4.1213 -1.0181 33 1 2.9079 -3.7787 -0.1090 34 1 -0.7326 -2.7497 -0.0857 35 1 -0.3375 -1.6981 1.3076 36 1 -0.2461 -6.2664 2.8237 37 1 -2.1620 -8.1430 3.0895 38 1 -0.6077 -8.9354 2.7361 39 1 -1.0097 -11.2800 1.9646 40 1 -2.2189 -13.5751 0.5092 41 1 -4.0475 -14.1350 -0.9837 42 1 -5.6513 -12.4438 -1.7316 43 1 -5.4806 -10.1313 -1.0225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962321449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:45 Heat of formation + Delta-G solvation = 111.829285 kcal Electronic energy + Delta-G solvation = -25833.266894 eV Core-core repulsion = 22074.460112 eV Total energy + Delta-G solvation = -3758.806782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.28276 -41.06897 -39.78280 -38.06489 -36.14424 -34.49967 -33.75655 -32.69934 -32.09775 -29.70887 -28.99154 -28.78360 -27.49187 -24.62052 -23.33942 -22.86710 -22.04238 -21.72991 -21.36933 -20.92960 -18.91385 -18.57975 -18.21388 -17.88102 -17.32711 -16.79715 -16.62791 -16.44243 -15.89522 -15.58921 -15.09393 -14.99483 -14.87221 -14.68769 -14.61414 -13.93848 -13.82198 -13.74681 -13.37189 -13.20985 -12.90166 -12.77214 -12.74935 -12.47761 -12.34919 -12.11662 -12.00697 -11.92107 -11.72510 -11.35011 -11.16515 -11.03065 -10.89114 -10.75118 -9.77535 -9.55459 -8.96978 -8.52691 -7.95389 -5.32797 -0.25640 0.95725 1.21697 1.39221 1.45327 1.46087 1.54056 1.57485 1.95489 2.45844 2.82214 2.99107 3.21453 3.27484 3.45547 3.61021 3.77106 3.79374 3.92142 4.00303 4.03417 4.10559 4.21330 4.27462 4.28834 4.45320 4.48418 4.58327 4.69667 4.76861 4.83786 4.90651 4.94270 5.23739 5.24725 5.36087 5.41163 5.48856 5.59171 5.60563 5.63329 5.74081 5.87142 6.11918 6.12439 6.43719 6.71111 6.96200 7.14227 7.63329 8.41632 9.18862 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032836 B = 0.001958 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.518401 B =14296.007962 C =14631.365139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.617 5.617 10 C 0.146 3.854 11 C -0.157 4.157 12 H 0.150 0.850 13 C -0.178 4.178 14 H 0.131 0.869 15 C 0.187 3.813 16 C 0.112 3.888 17 H 0.093 0.907 18 N -0.675 5.675 19 C 0.497 3.503 20 O -0.568 6.568 21 C 0.109 3.891 22 N -0.319 5.319 23 C 0.098 3.902 24 C -0.237 4.237 25 C -0.037 4.037 26 C -0.175 4.175 27 C -0.069 4.069 28 C -0.144 4.144 29 C 0.066 3.934 30 N -0.342 5.342 31 H 0.250 0.750 32 H 0.015 0.985 33 H 0.065 0.935 34 H -0.011 1.011 35 H 0.059 0.941 36 H 0.425 0.575 37 H 0.151 0.849 38 H 0.193 0.807 39 H 0.242 0.758 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 -29.178 10.457 31.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.215 1.215 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.340 5.340 10 C 0.020 3.980 11 C -0.178 4.178 12 H 0.167 0.833 13 C -0.199 4.199 14 H 0.149 0.851 15 C 0.061 3.939 16 C 0.005 3.995 17 H 0.111 0.889 18 N -0.327 5.327 19 C 0.284 3.716 20 O -0.445 6.445 21 C -0.014 4.014 22 N -0.093 5.093 23 C -0.057 4.057 24 C -0.246 4.246 25 C -0.057 4.057 26 C -0.194 4.194 27 C -0.091 4.091 28 C -0.165 4.165 29 C -0.087 4.087 30 N -0.168 5.168 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.083 0.917 34 H 0.007 0.993 35 H 0.077 0.923 36 H 0.263 0.737 37 H 0.168 0.832 38 H 0.210 0.790 39 H 0.258 0.742 40 H 0.174 0.826 41 H 0.167 0.833 42 H 0.165 0.835 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.580 -27.522 9.813 29.333 hybrid contribution 0.088 0.978 -0.285 1.022 sum -2.492 -26.544 9.527 28.312 Atomic orbital electron populations 1.70120 1.06703 1.25789 1.57143 1.25823 0.96514 1.01568 1.02002 0.84939 0.78359 0.78827 0.76725 1.18562 1.22130 1.21519 1.19448 0.91506 0.83387 1.42510 0.89731 1.45437 1.14071 1.01174 1.73349 1.21859 0.98081 0.84400 0.93658 1.24994 0.90711 1.00966 1.01157 0.83284 1.24285 1.04132 0.90768 1.00734 0.85084 1.20794 0.86039 0.94043 0.93012 1.21330 0.97960 0.85516 0.94741 0.88878 1.44990 1.57680 1.16993 1.13002 1.21220 0.77220 0.84229 0.88978 1.90834 1.54104 1.80123 1.19484 1.22120 1.01482 0.86106 0.91721 1.48274 1.19795 1.07592 1.33590 1.23518 1.00162 0.83515 0.98552 1.20075 1.00271 0.96632 1.07658 1.20649 0.97452 0.92706 0.94878 1.20892 0.96573 1.00606 1.01308 1.20996 0.98934 0.91646 0.97559 1.20084 0.98054 0.97697 1.00714 1.21464 0.97686 0.91339 0.98241 1.77801 1.02969 1.21147 1.14928 0.94088 0.96719 0.91689 0.99330 0.92269 0.73671 0.83177 0.78970 0.74192 0.82575 0.83257 0.83491 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.03 10.88 21.65 0.24 -57.79 16 2 C -0.07 -3.75 5.40 84.86 0.46 -3.29 16 3 Si 0.98 45.57 29.56 68.60 2.03 47.60 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.24 -13.50 10.35 84.03 0.87 -12.63 16 8 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 9 N -0.62 -32.21 3.38 -681.31 -2.30 -34.51 16 10 C 0.15 6.12 7.10 87.74 0.62 6.74 16 11 C -0.16 -5.02 7.33 -8.73 -0.06 -5.08 16 12 H 0.15 3.60 8.14 -2.39 -0.02 3.58 16 13 C -0.18 -6.35 6.97 -9.94 -0.07 -6.42 16 14 H 0.13 3.93 8.14 -2.39 -0.02 3.92 16 15 C 0.19 9.38 5.69 86.53 0.49 9.87 16 16 C 0.11 3.56 5.93 44.99 0.27 3.83 16 17 H 0.09 3.79 7.40 -2.38 -0.02 3.78 16 18 N -0.67 -14.08 5.56 -442.54 -2.46 -16.54 16 19 C 0.50 11.93 7.85 87.66 0.69 12.61 16 20 O -0.57 -21.60 15.23 -3.04 -0.05 -21.65 16 21 C 0.11 1.30 6.93 85.64 0.59 1.90 16 22 N -0.32 -6.67 3.36 -350.06 -1.17 -7.84 16 23 C 0.10 1.46 11.45 84.37 0.97 2.43 16 24 C -0.24 -4.98 6.33 -20.23 -0.13 -5.11 16 25 C -0.04 -0.57 10.09 22.38 0.23 -0.34 16 26 C -0.17 -2.65 9.90 22.02 0.22 -2.43 16 27 C -0.07 -1.28 9.89 22.02 0.22 -1.06 16 28 C -0.14 -3.69 10.08 22.38 0.23 -3.46 16 29 C 0.07 1.93 7.49 42.16 0.32 2.25 16 30 N -0.34 -10.92 11.54 -48.70 -0.56 -11.49 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 34 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 35 H 0.06 3.31 6.53 -2.39 -0.02 3.30 16 36 H 0.42 4.73 8.83 -92.71 -0.82 3.91 16 37 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.19 -0.13 8.04 -2.39 -0.02 -0.15 16 39 H 0.24 0.49 8.06 -2.91 -0.02 0.46 16 40 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.12 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -92.43 365.73 1.84 -90.59 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.22 Total: 11.84 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 5.90 Total: -0.20 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -6.27 Total: -128.17 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -92.43 1.84 -90.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962321449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.417 kcal (2) G-P(sol) polarization free energy of solvation -92.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds