Wall clock time and date at job start Tue Mar 31 2020 14:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48500 * 109.47387 * 240.00299 * 3 2 1 5 5 H 1.48500 * 109.47354 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47243 * 120.00514 * 3 2 1 7 7 C 1.38809 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99900 * 170.66118 * 7 2 1 9 9 N 1.36934 * 120.00026 * 350.66639 * 7 2 1 10 10 C 1.48147 * 127.83856 * 164.89885 * 9 7 2 11 11 C 1.54392 * 104.61507 * 140.40945 * 10 9 7 12 12 H 1.09003 * 118.18380 * 244.20014 * 11 10 9 13 13 C 1.54140 * 104.96688 * 23.83189 * 11 10 9 14 14 H 1.09005 * 121.78944 * 222.19377 * 13 11 10 15 15 C 1.51692 * 127.61510 * 345.16556 * 9 7 2 16 16 C 1.52999 * 59.75348 * 114.13632 * 13 11 10 17 17 H 1.08999 * 117.44004 * 252.37634 * 16 13 11 18 18 N 1.46498 * 117.44430 * 107.62889 * 16 13 11 19 19 C 1.34776 * 120.00177 * 154.83421 * 18 16 13 20 20 O 1.21285 * 119.99911 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00351 * 179.97438 * 19 18 16 22 22 C 1.50698 * 109.47329 * 180.02562 * 21 19 18 23 23 C 1.39684 * 119.08757 * 269.97707 * 22 21 19 24 24 C 1.35664 * 121.72763 * 180.02562 * 23 22 21 25 25 C 1.41130 * 119.53310 * 0.02562 * 24 23 22 26 26 C 1.38243 * 134.82126 * 179.97438 * 25 24 23 27 27 N 1.33990 * 107.90919 * 180.02562 * 26 25 24 28 28 H 0.96995 * 125.02180 * 179.97438 * 27 26 25 29 29 N 1.39949 * 109.95480 * 359.97438 * 27 26 25 30 30 C 1.32069 * 108.96155 * 359.72735 * 29 27 26 31 31 C 1.35631 * 119.09841 * 89.99878 * 22 21 19 32 32 H 0.96998 * 120.00236 * 359.97438 * 1 2 3 33 33 H 1.09005 * 110.40442 * 21.63149 * 10 9 7 34 34 H 1.08994 * 110.40655 * 259.19761 * 10 9 7 35 35 H 1.09004 * 111.95835 * 100.90788 * 15 9 7 36 36 H 1.09005 * 110.49059 * 337.34065 * 15 9 7 37 37 H 0.97000 * 120.00222 * 334.82978 * 18 16 13 38 38 H 1.09003 * 109.47084 * 59.99655 * 21 19 18 39 39 H 1.09002 * 109.47234 * 299.99893 * 21 19 18 40 40 H 1.07993 * 119.14042 * 0.02562 * 23 22 21 41 41 H 1.08000 * 120.23134 * 180.02562 * 24 23 22 42 42 H 1.08004 * 126.04526 * 359.97438 * 26 25 24 43 43 H 1.08005 * 120.19782 * 359.97438 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0795 -1.2082 -0.1523 9 7 1.3392 -2.3802 0.1913 10 6 1.8228 -3.7552 -0.0741 11 6 1.2861 -4.5917 1.1074 12 1 2.0078 -5.0450 1.7870 13 6 0.0628 -3.8100 1.6254 14 1 -0.1270 -3.6809 2.6910 15 6 -0.0706 -2.5675 0.7190 16 6 -0.1172 -5.1897 0.9890 17 1 -0.5637 -5.2302 -0.0044 18 7 -0.4533 -6.3046 1.8779 19 6 -1.1051 -7.3801 1.3932 20 8 -1.4130 -7.4250 0.2210 21 6 -1.4503 -8.5272 2.3075 22 6 -2.1704 -9.5946 1.5243 23 6 -3.5634 -9.5464 1.4327 24 6 -4.2657 -10.4794 0.7423 25 6 -3.5791 -11.5301 0.0970 26 6 -3.9588 -12.6174 -0.6677 27 7 -2.8496 -13.2835 -1.0161 28 1 -2.8306 -14.0894 -1.5556 29 7 -1.7226 -12.6447 -0.4866 30 6 -2.1114 -11.5779 0.1880 31 6 -1.4482 -10.5757 0.9283 32 1 -0.4850 0.8400 0.0004 33 1 2.9125 -3.7780 -0.0919 34 1 1.4185 -4.1250 -1.0163 35 1 -0.7842 -2.7569 -0.0830 36 1 -0.3770 -1.7007 1.3047 37 1 -0.2066 -6.2689 2.8154 38 1 -2.0934 -8.1700 3.1118 39 1 -0.5357 -8.9424 2.7308 40 1 -4.0953 -8.7454 1.9244 41 1 -5.3425 -10.4185 0.6869 42 1 -4.9706 -12.8834 -0.9361 43 1 -0.3718 -10.5877 1.0160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962432336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:20 Heat of formation + Delta-G solvation = 123.378306 kcal Electronic energy + Delta-G solvation = -25792.812417 eV Core-core repulsion = 22034.506439 eV Total energy + Delta-G solvation = -3758.305979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47368 -39.87122 -38.43084 -37.28898 -34.30649 -32.84305 -32.45488 -32.10067 -30.19992 -29.04963 -28.15957 -27.10327 -25.56089 -23.86576 -22.24276 -21.38449 -20.92458 -20.46815 -20.00760 -19.17190 -18.33225 -17.01020 -16.95269 -16.77657 -16.30347 -15.53122 -15.38688 -15.09668 -14.65901 -14.28286 -14.12269 -13.98976 -13.58330 -13.19455 -13.07611 -12.72032 -12.29539 -12.15186 -12.04363 -11.88182 -11.71927 -11.43007 -11.40778 -10.97921 -10.79121 -10.54089 -10.51231 -10.40850 -10.18766 -10.12905 -9.79412 -9.64238 -9.18022 -8.82736 -8.71471 -8.28856 -7.82004 -6.85059 -5.76292 -3.09207 0.40400 1.59710 2.23653 2.43084 2.70548 3.17102 3.41266 3.45449 3.46693 3.73330 4.01729 4.31956 4.35090 4.49601 4.58154 4.82640 4.92231 4.95838 5.04630 5.19443 5.27824 5.31028 5.38386 5.41803 5.43531 5.47821 5.59169 5.82910 5.93209 5.96496 6.18473 6.24140 6.27461 6.31409 6.49078 6.56549 6.68276 6.72791 6.78489 6.85165 6.93081 7.33549 7.34696 7.53661 7.63519 7.72137 8.17731 8.35690 9.09230 9.75748 10.52848 11.38754 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032083 B = 0.001947 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.527099 B =14374.121498 C =14466.569065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.158 3.842 11 C -0.183 4.183 12 H 0.102 0.898 13 C -0.178 4.178 14 H 0.101 0.899 15 C 0.185 3.815 16 C 0.096 3.904 17 H 0.131 0.869 18 N -0.700 5.700 19 C 0.515 3.485 20 O -0.528 6.528 21 C -0.105 4.105 22 C -0.018 4.018 23 C -0.134 4.134 24 C -0.047 4.047 25 C -0.205 4.205 26 C 0.078 3.922 27 N -0.429 5.429 28 H 0.442 0.558 29 N -0.308 5.308 30 C 0.110 3.890 31 C -0.092 4.092 32 H 0.255 0.745 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.032 0.968 36 H 0.091 0.909 37 H 0.399 0.601 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.187 0.813 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 -26.057 5.924 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.323 5.323 10 C 0.031 3.969 11 C -0.204 4.204 12 H 0.120 0.880 13 C -0.199 4.199 14 H 0.119 0.881 15 C 0.061 3.939 16 C -0.010 4.010 17 H 0.148 0.852 18 N -0.349 5.349 19 C 0.301 3.699 20 O -0.403 6.403 21 C -0.145 4.145 22 C -0.023 4.023 23 C -0.154 4.154 24 C -0.067 4.067 25 C -0.215 4.215 26 C -0.079 4.079 27 N -0.129 5.129 28 H 0.286 0.714 29 N -0.137 5.137 30 C -0.044 4.044 31 C -0.113 4.113 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.109 0.891 37 H 0.232 0.768 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.204 0.796 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.706 -26.528 4.640 28.303 hybrid contribution -0.110 0.901 0.465 1.019 sum -8.816 -25.628 5.104 27.578 Atomic orbital electron populations 1.69874 1.05023 1.25472 1.55987 1.24869 0.95647 0.97894 1.02036 0.86194 0.78522 0.83040 0.77962 1.21039 1.21583 1.21163 1.18965 0.90777 0.82464 1.43051 0.90606 1.46030 1.12431 0.99739 1.74121 1.21063 0.97070 0.85855 0.92892 1.24353 0.90541 1.02468 1.03068 0.87952 1.24560 1.02443 0.92532 1.00400 0.88061 1.21673 0.86412 0.92274 0.93576 1.21858 0.98432 0.84996 0.95686 0.85159 1.45399 1.58699 1.18162 1.12618 1.20420 0.77652 0.82931 0.88879 1.90751 1.52547 1.79751 1.17240 1.20763 1.02376 0.93334 0.98054 1.18750 0.93477 0.93605 0.96484 1.20391 0.93170 0.99695 1.02118 1.20158 0.98956 0.92353 0.95212 1.19660 0.93782 1.00013 1.08058 1.22679 0.93076 0.93818 0.98306 1.46303 1.04243 1.23129 1.39207 0.71365 1.77687 1.04962 1.11011 1.20031 1.20858 0.92829 0.93995 0.96721 1.19631 0.99218 0.93562 0.98903 0.93538 0.93047 0.95642 0.95019 0.89054 0.76773 0.87563 0.87729 0.85943 0.85766 0.79595 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.84 55.49 0.60 -26.38 16 2 C -0.01 -0.21 5.41 -17.43 -0.09 -0.31 16 3 Si 0.91 22.06 29.56 -169.99 -5.03 17.03 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -6.30 10.36 -15.06 -0.16 -6.46 16 8 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 9 N -0.60 -15.51 3.45 -165.82 -0.57 -16.08 16 10 C 0.16 3.40 7.05 -2.41 -0.02 3.39 16 11 C -0.18 -3.28 7.05 -89.29 -0.63 -3.91 16 12 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 13 C -0.18 -3.33 6.96 -89.30 -0.62 -3.95 16 14 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 15 C 0.19 4.46 5.91 -0.38 0.00 4.46 16 16 C 0.10 1.62 5.97 -67.93 -0.41 1.22 16 17 H 0.13 2.55 7.40 -51.93 -0.38 2.16 16 18 N -0.70 -9.02 5.56 -53.81 -0.30 -9.31 16 19 C 0.52 6.94 7.82 -10.99 -0.09 6.85 16 20 O -0.53 -9.63 15.60 5.55 0.09 -9.54 16 21 C -0.11 -0.95 5.77 -29.04 -0.17 -1.12 16 22 C -0.02 -0.20 4.33 -105.02 -0.45 -0.66 16 23 C -0.13 -1.39 9.51 -39.96 -0.38 -1.77 16 24 C -0.05 -0.45 10.09 -39.41 -0.40 -0.84 16 25 C -0.21 -2.16 6.33 -105.19 -0.67 -2.82 16 26 C 0.08 0.55 12.07 -16.61 -0.20 0.35 16 27 N -0.43 -3.30 7.18 30.84 0.22 -3.08 16 28 H 0.44 1.61 8.96 -182.72 -1.64 -0.03 16 29 N -0.31 -3.79 12.70 33.26 0.42 -3.37 16 30 C 0.11 1.40 7.49 -83.05 -0.62 0.78 16 31 C -0.09 -1.13 9.65 -39.41 -0.38 -1.51 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 2.42 6.58 -51.93 -0.34 2.08 16 37 H 0.40 3.82 8.83 -40.82 -0.36 3.46 16 38 H 0.11 0.68 8.07 -51.93 -0.42 0.26 16 39 H 0.10 0.70 8.06 -51.93 -0.42 0.28 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.19 0.43 8.06 -52.48 -0.42 0.00 16 43 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -37.21 365.03 -11.26 -48.47 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.91 Total: 3.06 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -5.28 Total: -6.30 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.37 Total: -58.22 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.21 -11.26 -48.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962432336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.850 kcal (2) G-P(sol) polarization free energy of solvation -37.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds