Wall clock time and date at job start Tue Mar 31 2020 14:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48500 * 109.47387 * 240.00299 * 3 2 1 5 5 H 1.48500 * 109.47354 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47243 * 120.00514 * 3 2 1 7 7 C 1.38809 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99900 * 170.66118 * 7 2 1 9 9 N 1.36934 * 120.00026 * 350.66639 * 7 2 1 10 10 C 1.48147 * 127.83856 * 164.89885 * 9 7 2 11 11 C 1.54392 * 104.61507 * 140.40945 * 10 9 7 12 12 H 1.09003 * 118.18380 * 244.20014 * 11 10 9 13 13 C 1.54140 * 104.96688 * 23.83189 * 11 10 9 14 14 H 1.09005 * 121.78944 * 222.19377 * 13 11 10 15 15 C 1.51692 * 127.61510 * 345.16556 * 9 7 2 16 16 C 1.52999 * 59.75348 * 114.13632 * 13 11 10 17 17 H 1.08999 * 117.44004 * 252.37634 * 16 13 11 18 18 N 1.46498 * 117.44430 * 107.62889 * 16 13 11 19 19 C 1.34776 * 120.00177 * 154.83421 * 18 16 13 20 20 O 1.21285 * 119.99911 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00351 * 179.97438 * 19 18 16 22 22 C 1.50698 * 109.47329 * 180.02562 * 21 19 18 23 23 C 1.39684 * 119.08757 * 269.97707 * 22 21 19 24 24 C 1.35664 * 121.72763 * 180.02562 * 23 22 21 25 25 C 1.41130 * 119.53310 * 0.02562 * 24 23 22 26 26 C 1.38243 * 134.82126 * 179.97438 * 25 24 23 27 27 N 1.33990 * 107.90919 * 180.02562 * 26 25 24 28 28 H 0.96995 * 125.02180 * 179.97438 * 27 26 25 29 29 N 1.39949 * 109.95480 * 359.97438 * 27 26 25 30 30 C 1.32069 * 108.96155 * 359.72735 * 29 27 26 31 31 C 1.35631 * 119.09841 * 89.99878 * 22 21 19 32 32 H 0.96998 * 120.00236 * 359.97438 * 1 2 3 33 33 H 1.09005 * 110.40442 * 21.63149 * 10 9 7 34 34 H 1.08994 * 110.40655 * 259.19761 * 10 9 7 35 35 H 1.09004 * 111.95835 * 100.90788 * 15 9 7 36 36 H 1.09005 * 110.49059 * 337.34065 * 15 9 7 37 37 H 0.97000 * 120.00222 * 334.82978 * 18 16 13 38 38 H 1.09003 * 109.47084 * 59.99655 * 21 19 18 39 39 H 1.09002 * 109.47234 * 299.99893 * 21 19 18 40 40 H 1.07993 * 119.14042 * 0.02562 * 23 22 21 41 41 H 1.08000 * 120.23134 * 180.02562 * 24 23 22 42 42 H 1.08004 * 126.04526 * 359.97438 * 26 25 24 43 43 H 1.08005 * 120.19782 * 359.97438 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0795 -1.2082 -0.1523 9 7 1.3392 -2.3802 0.1913 10 6 1.8228 -3.7552 -0.0741 11 6 1.2861 -4.5917 1.1074 12 1 2.0078 -5.0450 1.7870 13 6 0.0628 -3.8100 1.6254 14 1 -0.1270 -3.6809 2.6910 15 6 -0.0706 -2.5675 0.7190 16 6 -0.1172 -5.1897 0.9890 17 1 -0.5637 -5.2302 -0.0044 18 7 -0.4533 -6.3046 1.8779 19 6 -1.1051 -7.3801 1.3932 20 8 -1.4130 -7.4250 0.2210 21 6 -1.4503 -8.5272 2.3075 22 6 -2.1704 -9.5946 1.5243 23 6 -3.5634 -9.5464 1.4327 24 6 -4.2657 -10.4794 0.7423 25 6 -3.5791 -11.5301 0.0970 26 6 -3.9588 -12.6174 -0.6677 27 7 -2.8496 -13.2835 -1.0161 28 1 -2.8306 -14.0894 -1.5556 29 7 -1.7226 -12.6447 -0.4866 30 6 -2.1114 -11.5779 0.1880 31 6 -1.4482 -10.5757 0.9283 32 1 -0.4850 0.8400 0.0004 33 1 2.9125 -3.7780 -0.0919 34 1 1.4185 -4.1250 -1.0163 35 1 -0.7842 -2.7569 -0.0830 36 1 -0.3770 -1.7007 1.3047 37 1 -0.2066 -6.2689 2.8154 38 1 -2.0934 -8.1700 3.1118 39 1 -0.5357 -8.9424 2.7308 40 1 -4.0953 -8.7454 1.9244 41 1 -5.3425 -10.4185 0.6869 42 1 -4.9706 -12.8834 -0.9361 43 1 -0.3718 -10.5877 1.0160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962432336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:19 Heat of formation + Delta-G solvation = 97.105355 kcal Electronic energy + Delta-G solvation = -25793.951698 eV Core-core repulsion = 22034.506439 eV Total energy + Delta-G solvation = -3759.445259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.16151 -41.08064 -39.82181 -38.15743 -35.92620 -34.32681 -33.37941 -32.90453 -31.96237 -29.74635 -29.07521 -28.87346 -27.43910 -24.71216 -23.57295 -22.51071 -21.91237 -21.63444 -21.21034 -20.77457 -18.96838 -18.84056 -17.98777 -17.81369 -17.45205 -16.72406 -16.32373 -16.27388 -15.81038 -15.55605 -15.21856 -15.07494 -14.81945 -14.71608 -14.59759 -13.80129 -13.68943 -13.32497 -13.27138 -12.93750 -12.90958 -12.70767 -12.64399 -12.60474 -12.40662 -12.14913 -12.04687 -11.81673 -11.60846 -11.27163 -11.22517 -10.98554 -10.81297 -10.67874 -9.65000 -9.57143 -8.92612 -8.54970 -7.90070 -5.25690 -0.27459 0.85136 1.47289 1.50554 1.51658 1.57311 1.63732 1.90633 2.08733 2.49980 2.89406 2.93435 3.30736 3.33435 3.54956 3.69692 3.86249 3.88509 3.95252 4.06608 4.16513 4.20385 4.36013 4.39757 4.43219 4.54276 4.61326 4.67216 4.74457 4.81116 4.86498 4.95525 4.99151 5.26596 5.29427 5.42060 5.45796 5.49339 5.58652 5.60524 5.65657 5.74625 6.00771 6.13377 6.31966 6.61848 6.64088 6.96431 7.33525 7.65949 8.46129 9.24352 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.032083 B = 0.001947 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.527099 B =14374.121498 C =14466.569065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.982 3.018 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.623 5.623 10 C 0.150 3.850 11 C -0.168 4.168 12 H 0.137 0.863 13 C -0.174 4.174 14 H 0.129 0.871 15 C 0.187 3.813 16 C 0.117 3.883 17 H 0.100 0.900 18 N -0.683 5.683 19 C 0.516 3.484 20 O -0.581 6.581 21 C -0.094 4.094 22 C -0.019 4.019 23 C -0.164 4.164 24 C -0.038 4.038 25 C -0.242 4.242 26 C 0.113 3.887 27 N -0.418 5.418 28 H 0.459 0.541 29 N -0.360 5.360 30 C 0.081 3.919 31 C -0.127 4.127 32 H 0.250 0.750 33 H 0.062 0.938 34 H 0.013 0.987 35 H 0.003 0.997 36 H 0.061 0.939 37 H 0.420 0.580 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.155 0.845 42 H 0.241 0.759 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.157 -27.742 7.520 30.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.810 3.190 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.348 5.348 10 C 0.024 3.976 11 C -0.189 4.189 12 H 0.154 0.846 13 C -0.195 4.195 14 H 0.147 0.853 15 C 0.062 3.938 16 C 0.010 3.990 17 H 0.118 0.882 18 N -0.334 5.334 19 C 0.304 3.696 20 O -0.459 6.459 21 C -0.133 4.133 22 C -0.024 4.024 23 C -0.183 4.183 24 C -0.058 4.058 25 C -0.252 4.252 26 C -0.046 4.046 27 N -0.119 5.119 28 H 0.306 0.694 29 N -0.189 5.189 30 C -0.071 4.071 31 C -0.148 4.148 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.021 0.979 36 H 0.080 0.920 37 H 0.258 0.742 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.173 0.827 42 H 0.257 0.743 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.314 -28.271 6.274 30.420 hybrid contribution -0.016 1.289 -0.173 1.300 sum -9.330 -26.982 6.101 29.194 Atomic orbital electron populations 1.70079 1.06516 1.25814 1.57278 1.25744 0.96540 1.01293 1.02286 0.85107 0.77156 0.78454 0.78309 1.20312 1.21977 1.20073 1.19371 0.91356 0.83673 1.42465 0.90098 1.46365 1.13001 1.00803 1.74647 1.21194 0.97780 0.84621 0.93996 1.24257 0.91162 1.01885 1.01589 0.84569 1.24247 1.03654 0.91007 1.00623 0.85294 1.21421 0.85396 0.93777 0.93198 1.21339 0.97327 0.85356 0.95011 0.88226 1.45192 1.58359 1.16730 1.13137 1.21211 0.76216 0.83447 0.88700 1.90742 1.54561 1.80757 1.19878 1.20823 1.04242 0.90885 0.97396 1.19020 0.94136 0.93368 0.95895 1.20687 0.93150 1.00924 1.03587 1.20570 1.00478 0.91284 0.93469 1.20123 0.92998 1.01966 1.10099 1.23519 0.94659 0.91466 0.94938 1.46368 1.03700 1.23365 1.38494 0.69390 1.77588 1.07213 1.12087 1.22041 1.21186 0.94531 0.94318 0.97086 1.19782 0.99296 0.94963 1.00780 0.94099 0.91980 0.96930 0.97946 0.92008 0.74178 0.84017 0.84921 0.84397 0.82731 0.74274 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.72 10.84 21.65 0.23 -57.48 16 2 C -0.07 -3.75 5.41 84.86 0.46 -3.29 16 3 Si 0.98 45.91 29.56 68.60 2.03 47.94 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.24 -13.68 10.36 84.03 0.87 -12.81 16 8 H 0.08 4.40 7.85 -2.91 -0.02 4.37 16 9 N -0.62 -32.99 3.45 -678.54 -2.34 -35.33 16 10 C 0.15 6.48 7.05 86.54 0.61 7.09 16 11 C -0.17 -5.75 7.05 -9.93 -0.07 -5.82 16 12 H 0.14 3.82 8.14 -2.39 -0.02 3.80 16 13 C -0.17 -6.37 6.96 -9.94 -0.07 -6.44 16 14 H 0.13 4.03 8.14 -2.38 -0.02 4.01 16 15 C 0.19 9.31 5.91 85.82 0.51 9.82 16 16 C 0.12 3.86 5.97 44.99 0.27 4.13 16 17 H 0.10 4.01 7.40 -2.39 -0.02 4.00 16 18 N -0.68 -15.99 5.56 -442.54 -2.46 -18.45 16 19 C 0.52 13.15 7.82 87.66 0.69 13.83 16 20 O -0.58 -21.39 15.60 -3.05 -0.05 -21.44 16 21 C -0.09 -1.47 5.77 29.10 0.17 -1.31 16 22 C -0.02 -0.41 4.33 -20.12 -0.09 -0.50 16 23 C -0.16 -3.17 9.51 22.02 0.21 -2.96 16 24 C -0.04 -0.66 10.09 22.38 0.23 -0.43 16 25 C -0.24 -4.75 6.33 -20.23 -0.13 -4.88 16 26 C 0.11 1.25 12.07 84.36 1.02 2.27 16 27 N -0.42 -5.79 7.18 -56.34 -0.40 -6.20 16 28 H 0.46 2.50 8.96 -213.42 -1.91 0.59 16 29 N -0.36 -8.98 12.70 -48.70 -0.62 -9.60 16 30 C 0.08 2.11 7.49 42.16 0.32 2.42 16 31 C -0.13 -3.19 9.65 22.38 0.22 -2.97 16 32 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 33 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 34 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 36 H 0.06 3.42 6.58 -2.38 -0.02 3.41 16 37 H 0.42 6.39 8.83 -92.71 -0.82 5.57 16 38 H 0.14 1.24 8.07 -2.39 -0.02 1.22 16 39 H 0.13 1.36 8.06 -2.39 -0.02 1.34 16 40 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 41 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.24 -0.17 8.06 -2.91 -0.02 -0.19 16 43 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -87.08 365.03 -0.07 -87.16 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -1.67 Total: 15.24 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.20 Total: -1.84 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -5.59 Total: -127.06 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -87.08 -0.07 -87.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962432336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.264 kcal (2) G-P(sol) polarization free energy of solvation -87.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds