Wall clock time and date at job start Tue Mar 31 2020 15:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99979 * 2 1 4 4 H 1.48502 * 109.47123 * 269.99949 * 3 2 1 5 5 H 1.48497 * 109.47230 * 29.99912 * 3 2 1 6 6 H 1.48501 * 109.47126 * 150.00069 * 3 2 1 7 7 C 1.38818 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99740 * 189.09540 * 7 2 1 9 9 N 1.36933 * 119.99814 * 9.09889 * 7 2 1 10 10 C 1.48148 * 127.84055 * 15.57418 * 9 7 2 11 11 C 1.54391 * 104.61960 * 140.41501 * 10 9 7 12 12 H 1.08995 * 117.61303 * 242.77089 * 11 10 9 13 13 C 1.54149 * 104.96407 * 23.82696 * 11 10 9 14 14 H 1.09001 * 121.79143 * 222.19896 * 13 11 10 15 15 C 1.48151 * 127.83577 * 195.57300 * 9 7 2 16 16 C 1.52995 * 118.12392 * 87.18759 * 11 10 9 17 17 H 1.09003 * 117.44157 * 16.06716 * 16 11 10 18 18 N 1.46500 * 117.44274 * 160.81237 * 16 11 10 19 19 C 1.34778 * 120.00001 * 205.44705 * 18 16 11 20 20 O 1.21282 * 119.99808 * 359.71989 * 19 18 16 21 21 C 1.50696 * 119.99905 * 179.72478 * 19 18 16 22 22 C 1.50702 * 109.47096 * 179.97438 * 21 19 18 23 23 N 1.30248 * 126.10739 * 269.68805 * 22 21 19 24 24 N 1.39864 * 110.08550 * 179.90020 * 23 22 21 25 25 H 0.97005 * 125.46572 * 180.13707 * 24 23 22 26 26 C 1.37041 * 109.08088 * 0.37243 * 24 23 22 27 27 C 1.39286 * 133.85167 * 179.78878 * 26 24 23 28 28 C 1.36594 * 119.84773 * 179.97438 * 27 26 24 29 29 C 1.38960 * 120.82111 * 0.02562 * 28 27 26 30 30 C 1.36465 * 120.62368 * 359.97438 * 29 28 27 31 31 C 1.39948 * 119.64073 * 0.02562 * 30 29 28 32 32 H 0.96991 * 120.00277 * 359.97438 * 1 2 3 33 33 H 1.08998 * 110.40794 * 21.63010 * 10 9 7 34 34 H 1.09004 * 110.40342 * 259.19571 * 10 9 7 35 35 H 1.08995 * 110.40617 * 338.36811 * 15 9 7 36 36 H 1.08996 * 110.40486 * 100.68555 * 15 9 7 37 37 H 0.96996 * 120.00220 * 25.16294 * 18 16 11 38 38 H 1.09010 * 109.46968 * 299.99488 * 21 19 18 39 39 H 1.08996 * 109.47701 * 59.99951 * 21 19 18 40 40 H 1.07994 * 120.07864 * 0.02562 * 27 26 24 41 41 H 1.08003 * 119.58869 * 179.97438 * 28 27 26 42 42 H 1.07993 * 119.68963 * 179.97438 * 29 28 27 43 43 H 1.08003 * 120.18349 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0801 -1.2079 0.1484 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0342 -2.5711 -0.7101 11 6 0.0638 -3.8174 -1.6161 12 1 -0.1483 -3.6885 -2.6774 13 6 1.2856 -4.5966 -1.0904 14 1 2.0088 -5.0541 -1.7655 15 6 1.8196 -3.7546 0.0890 16 6 -0.1183 -5.1933 -0.9721 17 1 -0.5675 -5.2278 0.0205 18 7 -0.4525 -6.3133 -1.8553 19 6 -1.1110 -7.3832 -1.3672 20 8 -1.4223 -7.4209 -0.1957 21 6 -1.4602 -8.5325 -2.2772 22 6 -2.1875 -9.5926 -1.4909 23 7 -1.6402 -10.5960 -0.8663 24 7 -2.6254 -11.3704 -0.2453 25 1 -2.4647 -12.1691 0.2813 26 6 -3.8548 -10.8231 -0.5043 27 6 -5.1578 -11.1670 -0.1521 28 6 -6.2028 -10.3974 -0.5780 29 6 -5.9843 -9.2710 -1.3619 30 6 -4.7187 -8.9098 -1.7224 31 6 -3.6313 -9.6820 -1.2986 32 1 -0.4850 0.8399 0.0004 33 1 -0.3433 -1.7023 -1.2912 34 1 -0.7317 -2.7500 0.1082 35 1 2.9091 -3.7785 0.1108 36 1 1.4133 -4.1174 1.0330 37 1 -0.2036 -6.2830 -2.7923 38 1 -2.0999 -8.1754 -3.0844 39 1 -0.5470 -8.9543 -2.6968 40 1 -5.3414 -12.0397 0.4570 41 1 -7.2115 -10.6682 -0.3028 42 1 -6.8240 -8.6758 -1.6889 43 1 -4.5571 -8.0331 -2.3322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962729126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:35 Heat of formation + Delta-G solvation = 112.891442 kcal Electronic energy + Delta-G solvation = -26046.718529 eV Core-core repulsion = 22287.957806 eV Total energy + Delta-G solvation = -3758.760723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53377 -39.77219 -38.31968 -37.36747 -34.47113 -33.60086 -32.63983 -30.80261 -30.20609 -29.90219 -28.44721 -27.13743 -25.58762 -23.28345 -22.49095 -22.29524 -20.87960 -20.43227 -19.63520 -19.27814 -18.09632 -17.14294 -17.09678 -16.85015 -16.25840 -15.49319 -15.20821 -14.98168 -14.75754 -14.46206 -14.15468 -13.97320 -13.60653 -13.40457 -13.18015 -12.74974 -12.55382 -12.20320 -12.17142 -12.12124 -11.50980 -11.48240 -11.32969 -10.99036 -10.94784 -10.83352 -10.45873 -10.38510 -10.20001 -10.14310 -9.81201 -9.72273 -9.19381 -8.89866 -8.73088 -8.32848 -8.21784 -6.86575 -5.79443 -3.13723 0.71229 1.28727 2.13871 2.43788 2.61644 3.18281 3.38818 3.43899 3.46005 3.59143 4.10877 4.27213 4.32929 4.44977 4.47547 4.72765 4.74916 4.95218 5.08048 5.13009 5.15870 5.17618 5.35217 5.38174 5.39960 5.56839 5.58968 5.72299 5.84085 5.91542 6.06503 6.15376 6.19882 6.24768 6.28890 6.53754 6.61395 6.71108 6.80875 6.91028 7.06158 7.35378 7.37093 7.53143 7.56171 7.71684 8.20784 8.26943 9.11254 9.73833 10.50987 11.34984 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025576 B = 0.002159 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.504028 B =12968.672881 C =13558.730811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.179 4.179 12 H 0.104 0.896 13 C -0.182 4.182 14 H 0.103 0.897 15 C 0.155 3.845 16 C 0.096 3.904 17 H 0.131 0.869 18 N -0.697 5.697 19 C 0.519 3.481 20 O -0.526 6.526 21 C -0.063 4.063 22 C 0.124 3.876 23 N -0.237 5.237 24 N -0.508 5.508 25 H 0.440 0.560 26 C 0.129 3.871 27 C -0.145 4.145 28 C -0.070 4.070 29 C -0.160 4.160 30 C -0.036 4.036 31 C -0.164 4.164 32 H 0.255 0.745 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.051 0.949 36 H 0.028 0.972 37 H 0.400 0.600 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.178 -23.093 -7.590 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.200 4.200 12 H 0.122 0.878 13 C -0.203 4.203 14 H 0.121 0.879 15 C 0.028 3.972 16 C -0.010 4.010 17 H 0.148 0.852 18 N -0.346 5.346 19 C 0.304 3.696 20 O -0.401 6.401 21 C -0.105 4.105 22 C -0.054 4.054 23 N -0.051 5.051 24 N -0.223 5.223 25 H 0.284 0.716 26 C 0.013 3.987 27 C -0.167 4.167 28 C -0.091 4.091 29 C -0.180 4.180 30 C -0.057 4.057 31 C -0.171 4.171 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.234 0.766 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.306 -23.453 -6.377 26.026 hybrid contribution -0.046 0.720 -0.391 0.821 sum -9.352 -22.734 -6.768 25.497 Atomic orbital electron populations 1.69893 1.05047 1.25448 1.55755 1.24908 0.95658 0.97993 1.01762 0.86098 0.78697 0.83226 0.77605 1.21517 1.21652 1.20541 1.19003 0.90829 0.82284 1.43353 0.90509 1.45180 1.13347 0.99998 1.73138 1.21071 0.86942 0.92451 0.93689 1.24627 1.02299 0.92529 1.00570 0.87848 1.24345 0.90510 1.02459 1.03026 0.87911 1.21131 0.97226 0.85832 0.92991 1.21841 0.98519 0.84862 0.95737 0.85166 1.45316 1.58281 1.18102 1.12881 1.20191 0.77887 0.82864 0.88677 1.90760 1.52595 1.79603 1.17177 1.20049 1.02092 0.91215 0.97165 1.22600 0.90618 0.94618 0.97605 1.76499 1.13690 1.05190 1.09766 1.45820 1.01392 1.26831 1.48228 0.71589 1.18837 0.87996 0.94496 0.97354 1.19812 0.88863 1.02720 1.05267 1.20726 0.98430 0.94077 0.95825 1.20674 0.96841 0.98670 1.01805 1.20383 0.90924 0.97350 0.96994 1.19689 0.93017 0.98697 1.05744 0.93524 0.89041 0.95654 0.93019 0.95479 0.76643 0.86389 0.86641 0.85751 0.85369 0.85492 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.86 55.49 0.60 -26.19 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 3 Si 0.91 21.90 29.56 -169.99 -5.03 16.88 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.31 10.35 -15.06 -0.16 -6.47 16 8 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 9 N -0.59 -15.26 3.38 -168.82 -0.57 -15.83 16 10 C 0.18 4.43 5.70 -2.41 -0.01 4.41 16 11 C -0.18 -3.30 7.05 -89.29 -0.63 -3.93 16 12 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 13 C -0.18 -3.23 7.05 -89.26 -0.63 -3.85 16 14 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 15 C 0.15 3.31 7.04 -2.38 -0.02 3.29 16 16 C 0.10 1.61 5.98 -67.93 -0.41 1.20 16 17 H 0.13 2.53 7.40 -51.93 -0.38 2.15 16 18 N -0.70 -8.80 5.56 -53.81 -0.30 -9.10 16 19 C 0.52 7.05 7.82 -10.99 -0.09 6.96 16 20 O -0.53 -9.77 15.60 5.56 0.09 -9.69 16 21 C -0.06 -0.60 6.29 -29.04 -0.18 -0.78 16 22 C 0.12 1.53 5.93 -80.19 -0.48 1.06 16 23 N -0.24 -3.12 12.55 34.84 0.44 -2.68 16 24 N -0.51 -5.56 7.37 32.36 0.24 -5.32 16 25 H 0.44 3.34 8.96 -182.77 -1.64 1.70 16 26 C 0.13 1.45 7.34 -84.17 -0.62 0.83 16 27 C -0.14 -1.27 10.03 -39.79 -0.40 -1.67 16 28 C -0.07 -0.56 9.96 -39.91 -0.40 -0.95 16 29 C -0.16 -1.38 9.97 -39.95 -0.40 -1.78 16 30 C -0.04 -0.36 10.07 -39.58 -0.40 -0.76 16 31 C -0.16 -1.97 6.33 -105.21 -0.67 -2.63 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.09 2.43 6.51 -51.93 -0.34 2.09 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.40 3.64 8.83 -40.82 -0.36 3.28 16 38 H 0.12 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -35.95 365.60 -11.51 -47.46 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.92 Total: 4.31 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -5.57 Total: -5.35 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.41 Total: -59.12 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.95 -11.51 -47.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962729126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.348 kcal (2) G-P(sol) polarization free energy of solvation -35.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds