Wall clock time and date at job start Tue Mar 31 2020 15:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99979 * 2 1 4 4 H 1.48502 * 109.47123 * 269.99949 * 3 2 1 5 5 H 1.48497 * 109.47230 * 29.99912 * 3 2 1 6 6 H 1.48501 * 109.47126 * 150.00069 * 3 2 1 7 7 C 1.38818 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99740 * 189.09540 * 7 2 1 9 9 N 1.36933 * 119.99814 * 9.09889 * 7 2 1 10 10 C 1.48148 * 127.84055 * 15.57418 * 9 7 2 11 11 C 1.54391 * 104.61960 * 140.41501 * 10 9 7 12 12 H 1.08995 * 117.61303 * 242.77089 * 11 10 9 13 13 C 1.54149 * 104.96407 * 23.82696 * 11 10 9 14 14 H 1.09001 * 121.79143 * 222.19896 * 13 11 10 15 15 C 1.48151 * 127.83577 * 195.57300 * 9 7 2 16 16 C 1.52995 * 118.12392 * 87.18759 * 11 10 9 17 17 H 1.09003 * 117.44157 * 16.06716 * 16 11 10 18 18 N 1.46500 * 117.44274 * 160.81237 * 16 11 10 19 19 C 1.34778 * 120.00001 * 205.44705 * 18 16 11 20 20 O 1.21282 * 119.99808 * 359.71989 * 19 18 16 21 21 C 1.50696 * 119.99905 * 179.72478 * 19 18 16 22 22 C 1.50702 * 109.47096 * 179.97438 * 21 19 18 23 23 N 1.30248 * 126.10739 * 269.68805 * 22 21 19 24 24 N 1.39864 * 110.08550 * 179.90020 * 23 22 21 25 25 H 0.97005 * 125.46572 * 180.13707 * 24 23 22 26 26 C 1.37041 * 109.08088 * 0.37243 * 24 23 22 27 27 C 1.39286 * 133.85167 * 179.78878 * 26 24 23 28 28 C 1.36594 * 119.84773 * 179.97438 * 27 26 24 29 29 C 1.38960 * 120.82111 * 0.02562 * 28 27 26 30 30 C 1.36465 * 120.62368 * 359.97438 * 29 28 27 31 31 C 1.39948 * 119.64073 * 0.02562 * 30 29 28 32 32 H 0.96991 * 120.00277 * 359.97438 * 1 2 3 33 33 H 1.08998 * 110.40794 * 21.63010 * 10 9 7 34 34 H 1.09004 * 110.40342 * 259.19571 * 10 9 7 35 35 H 1.08995 * 110.40617 * 338.36811 * 15 9 7 36 36 H 1.08996 * 110.40486 * 100.68555 * 15 9 7 37 37 H 0.96996 * 120.00220 * 25.16294 * 18 16 11 38 38 H 1.09010 * 109.46968 * 299.99488 * 21 19 18 39 39 H 1.08996 * 109.47701 * 59.99951 * 21 19 18 40 40 H 1.07994 * 120.07864 * 0.02562 * 27 26 24 41 41 H 1.08003 * 119.58869 * 179.97438 * 28 27 26 42 42 H 1.07993 * 119.68963 * 179.97438 * 29 28 27 43 43 H 1.08003 * 120.18349 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0801 -1.2079 0.1484 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0342 -2.5711 -0.7101 11 6 0.0638 -3.8174 -1.6161 12 1 -0.1483 -3.6885 -2.6774 13 6 1.2856 -4.5966 -1.0904 14 1 2.0088 -5.0541 -1.7655 15 6 1.8196 -3.7546 0.0890 16 6 -0.1183 -5.1933 -0.9721 17 1 -0.5675 -5.2278 0.0205 18 7 -0.4525 -6.3133 -1.8553 19 6 -1.1110 -7.3832 -1.3672 20 8 -1.4223 -7.4209 -0.1957 21 6 -1.4602 -8.5325 -2.2772 22 6 -2.1875 -9.5926 -1.4909 23 7 -1.6402 -10.5960 -0.8663 24 7 -2.6254 -11.3704 -0.2453 25 1 -2.4647 -12.1691 0.2813 26 6 -3.8548 -10.8231 -0.5043 27 6 -5.1578 -11.1670 -0.1521 28 6 -6.2028 -10.3974 -0.5780 29 6 -5.9843 -9.2710 -1.3619 30 6 -4.7187 -8.9098 -1.7224 31 6 -3.6313 -9.6820 -1.2986 32 1 -0.4850 0.8399 0.0004 33 1 -0.3433 -1.7023 -1.2912 34 1 -0.7317 -2.7500 0.1082 35 1 2.9091 -3.7785 0.1108 36 1 1.4133 -4.1174 1.0330 37 1 -0.2036 -6.2830 -2.7923 38 1 -2.0999 -8.1754 -3.0844 39 1 -0.5470 -8.9543 -2.6968 40 1 -5.3414 -12.0397 0.4570 41 1 -7.2115 -10.6682 -0.3028 42 1 -6.8240 -8.6758 -1.6889 43 1 -4.5571 -8.0331 -2.3322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962729126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:34 Heat of formation + Delta-G solvation = 88.042481 kcal Electronic energy + Delta-G solvation = -26047.796061 eV Core-core repulsion = 22287.957806 eV Total energy + Delta-G solvation = -3759.838255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29848 -41.05483 -39.76583 -38.07069 -36.07478 -34.52730 -34.18977 -32.24236 -31.24104 -30.69030 -29.34183 -28.91142 -27.49842 -24.05301 -23.81844 -23.12815 -22.20460 -21.91014 -20.88676 -20.60348 -18.88594 -18.82106 -18.11687 -17.85951 -17.59538 -16.74237 -16.22497 -16.09109 -15.89884 -15.64731 -15.25134 -15.07086 -14.81843 -14.72682 -14.62479 -14.13439 -13.74155 -13.43364 -13.32556 -13.07163 -12.88253 -12.82989 -12.79801 -12.70437 -12.12333 -12.02301 -11.98823 -11.87067 -11.73504 -11.64966 -11.33492 -10.94421 -10.81497 -10.66989 -9.68783 -9.63995 -8.94507 -8.92481 -7.91712 -5.28856 -0.00748 0.57847 1.30080 1.47445 1.49415 1.54970 1.58449 1.72002 2.12255 2.49029 2.87261 2.88144 3.28730 3.35533 3.56728 3.60357 3.76867 3.83122 3.86147 3.95878 4.15438 4.16553 4.32081 4.39788 4.46463 4.49617 4.52100 4.54421 4.66513 4.83646 4.91507 4.97857 4.98970 5.08818 5.29402 5.38347 5.42874 5.45591 5.52312 5.56301 5.62861 5.65292 5.97001 6.16747 6.37677 6.55413 6.58656 7.00341 7.25949 7.66916 8.45543 9.22238 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025576 B = 0.002159 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.504028 B =12968.672881 C =13558.730811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.983 3.017 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.082 0.918 9 N -0.617 5.617 10 C 0.187 3.813 11 C -0.174 4.174 12 H 0.133 0.867 13 C -0.166 4.166 14 H 0.138 0.862 15 C 0.147 3.853 16 C 0.117 3.883 17 H 0.098 0.902 18 N -0.678 5.678 19 C 0.521 3.479 20 O -0.582 6.582 21 C -0.053 4.053 22 C 0.110 3.890 23 N -0.270 5.270 24 N -0.509 5.509 25 H 0.449 0.551 26 C 0.108 3.892 27 C -0.151 4.151 28 C -0.069 4.069 29 C -0.163 4.163 30 C -0.054 4.054 31 C -0.193 4.193 32 H 0.250 0.750 33 H 0.061 0.939 34 H -0.008 1.008 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.423 0.577 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.247 -24.373 -9.579 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.370 4.370 8 H 0.100 0.900 9 N -0.341 5.341 10 C 0.061 3.939 11 C -0.195 4.195 12 H 0.151 0.849 13 C -0.187 4.187 14 H 0.156 0.844 15 C 0.021 3.979 16 C 0.009 3.991 17 H 0.116 0.884 18 N -0.329 5.329 19 C 0.308 3.692 20 O -0.461 6.461 21 C -0.094 4.094 22 C -0.068 4.068 23 N -0.084 5.084 24 N -0.225 5.225 25 H 0.295 0.705 26 C -0.007 4.007 27 C -0.173 4.173 28 C -0.090 4.090 29 C -0.182 4.182 30 C -0.074 4.074 31 C -0.200 4.200 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.010 0.990 35 H 0.081 0.919 36 H 0.032 0.968 37 H 0.261 0.739 38 H 0.175 0.825 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.177 0.823 42 H 0.168 0.832 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.351 -24.782 -8.411 27.791 hybrid contribution -0.123 1.049 0.330 1.106 sum -9.474 -23.733 -8.081 26.802 Atomic orbital electron populations 1.70097 1.06582 1.25831 1.57091 1.25784 0.96527 1.01399 1.01991 0.85018 0.77633 0.78618 0.77674 1.20839 1.22181 1.19278 1.19402 0.91393 0.83466 1.42736 0.89983 1.45495 1.13834 1.01089 1.73707 1.20817 0.85893 0.94005 0.93175 1.24310 1.03540 0.90833 1.00810 0.84911 1.24251 0.91141 1.01811 1.01513 0.84385 1.21265 0.97971 0.84586 0.94085 1.21313 0.97480 0.85279 0.95014 0.88368 1.45065 1.57818 1.16544 1.13449 1.20922 0.76464 0.83423 0.88410 1.90750 1.54708 1.80695 1.19919 1.20176 1.03990 0.88777 0.96498 1.23059 0.91206 0.94896 0.97644 1.76393 1.15000 1.06228 1.10798 1.45829 1.01238 1.27122 1.48313 0.70487 1.19246 0.88772 0.94825 0.97872 1.20192 0.88085 1.03678 1.05371 1.21167 0.99697 0.93370 0.94734 1.21069 0.97051 0.98940 1.01172 1.20672 0.91143 0.97881 0.97692 1.20043 0.93504 0.99673 1.06824 0.94047 0.92077 0.98992 0.91884 0.96842 0.73889 0.82499 0.83770 0.83454 0.82285 0.83202 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.43 10.86 21.65 0.24 -57.20 16 2 C -0.06 -3.62 5.40 84.86 0.46 -3.16 16 3 Si 0.98 45.53 29.56 68.60 2.03 47.56 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.24 -13.64 10.35 84.04 0.87 -12.77 16 8 H 0.08 4.42 7.84 -2.91 -0.02 4.40 16 9 N -0.62 -32.40 3.38 -688.03 -2.32 -34.73 16 10 C 0.19 9.30 5.70 86.53 0.49 9.79 16 11 C -0.17 -6.24 7.05 -9.93 -0.07 -6.31 16 12 H 0.13 4.02 8.14 -2.39 -0.02 4.00 16 13 C -0.17 -5.58 7.05 -9.92 -0.07 -5.65 16 14 H 0.14 3.75 8.14 -2.39 -0.02 3.73 16 15 C 0.15 6.27 7.04 86.55 0.61 6.88 16 16 C 0.12 3.78 5.98 44.99 0.27 4.05 16 17 H 0.10 3.93 7.40 -2.39 -0.02 3.92 16 18 N -0.68 -15.33 5.56 -442.54 -2.46 -17.80 16 19 C 0.52 13.28 7.82 87.66 0.69 13.96 16 20 O -0.58 -21.76 15.60 -3.03 -0.05 -21.81 16 21 C -0.05 -0.87 6.29 29.10 0.18 -0.69 16 22 C 0.11 2.62 5.93 44.79 0.27 2.88 16 23 N -0.27 -7.03 12.55 -43.69 -0.55 -7.58 16 24 N -0.51 -11.15 7.37 -51.53 -0.38 -11.53 16 25 H 0.45 6.92 8.96 -213.47 -1.91 5.01 16 26 C 0.11 2.38 7.34 39.21 0.29 2.67 16 27 C -0.15 -2.44 10.03 22.14 0.22 -2.22 16 28 C -0.07 -0.94 9.96 22.06 0.22 -0.72 16 29 C -0.16 -2.47 9.97 22.03 0.22 -2.25 16 30 C -0.05 -1.01 10.07 22.27 0.22 -0.79 16 31 C -0.19 -4.50 6.33 -20.24 -0.13 -4.63 16 32 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.06 3.38 6.51 -2.39 -0.02 3.37 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.42 5.88 8.83 -92.71 -0.82 5.06 16 38 H 0.16 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 41 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 42 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -82.81 365.60 -0.43 -83.24 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -1.67 Total: 18.79 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 4.74 Total: 1.04 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -5.48 Total: -128.82 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -82.81 -0.43 -83.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962729126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.281 kcal (2) G-P(sol) polarization free energy of solvation -82.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds