Wall clock time and date at job start Tue Mar 31 2020 14:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48501 * 109.47072 * 264.99271 * 3 2 1 5 5 H 1.48506 * 109.47120 * 144.99642 * 3 2 1 6 6 H 1.48494 * 109.47321 * 24.99120 * 3 2 1 7 7 C 1.38818 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99271 * 171.33153 * 7 2 1 9 9 N 1.36936 * 120.00148 * 351.33316 * 7 2 1 10 10 C 1.48140 * 127.83547 * 164.76416 * 9 7 2 11 11 C 1.54390 * 104.61976 * 140.41411 * 10 9 7 12 12 H 1.09002 * 117.62138 * 244.78623 * 11 10 9 13 13 C 1.54292 * 104.95779 * 23.86532 * 11 10 9 14 14 H 1.08999 * 121.81620 * 222.18120 * 13 11 10 15 15 C 1.48141 * 127.83704 * 344.44339 * 9 7 2 16 16 C 1.53001 * 118.12269 * 89.20474 * 11 10 9 17 17 H 1.08992 * 117.44532 * 16.10890 * 16 11 10 18 18 N 1.46502 * 117.44172 * 160.81356 * 16 11 10 19 19 C 1.34776 * 120.00055 * 204.99389 * 18 16 11 20 20 O 1.21281 * 119.99616 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00023 * 179.97438 * 19 18 16 22 22 C 1.50696 * 109.46778 * 180.02562 * 21 19 18 23 23 C 1.34230 * 126.56721 * 264.68798 * 22 21 19 24 24 N 1.36917 * 109.91333 * 179.89483 * 23 22 21 25 25 H 0.97003 * 124.99270 * 180.13520 * 24 23 22 26 26 C 1.37420 * 110.02647 * 0.38686 * 24 23 22 27 27 N 1.32653 * 133.20295 * 179.79488 * 26 24 23 28 28 C 1.31584 * 121.68058 * 179.97438 * 27 26 24 29 29 C 1.38668 * 121.57817 * 0.02562 * 28 27 26 30 30 C 1.38190 * 119.41102 * 359.94131 * 29 28 27 31 31 C 1.39695 * 118.04180 * 0.07137 * 30 29 28 32 32 H 0.97004 * 119.99858 * 0.02562 * 1 2 3 33 33 H 1.09001 * 110.40970 * 259.19754 * 10 9 7 34 34 H 1.09003 * 110.41393 * 21.63084 * 10 9 7 35 35 H 1.09000 * 110.41049 * 338.36644 * 15 9 7 36 36 H 1.08998 * 110.40933 * 100.80550 * 15 9 7 37 37 H 0.96997 * 119.99683 * 25.00454 * 18 16 11 38 38 H 1.08992 * 109.47585 * 300.00835 * 21 19 18 39 39 H 1.08999 * 109.46681 * 60.01270 * 21 19 18 40 40 H 1.07996 * 125.04518 * 0.03561 * 23 22 21 41 41 H 1.07999 * 119.21368 * 180.02562 * 28 27 26 42 42 H 1.08001 * 120.28785 * 179.97438 * 29 28 27 43 43 H 1.08005 * 120.97955 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6035 1.9853 -1.3947 5 1 3.4909 1.4729 0.8032 6 1 1.3988 2.6809 0.5915 7 6 2.0102 -1.2022 0.0005 8 1 3.0809 -1.2076 -0.1404 9 7 1.3372 -2.3813 0.1798 10 6 1.8225 -3.7547 -0.0900 11 6 1.2760 -4.5983 1.0818 12 1 1.9997 -5.0437 1.7645 13 6 0.0471 -3.8189 1.5945 14 1 -0.1523 -3.6960 2.6590 15 6 -0.0390 -2.5731 0.6936 16 6 -0.1073 -5.2339 0.9293 17 1 -0.5251 -5.2928 -0.0756 18 7 -0.4380 -6.3522 1.8162 19 6 -1.3618 -7.2591 1.4414 20 8 -1.9190 -7.1497 0.3697 21 6 -1.7016 -8.4097 2.3534 22 6 -2.7540 -9.2712 1.7044 23 6 -4.0799 -9.1973 1.8996 24 7 -4.7168 -10.1389 1.1365 25 1 -5.6768 -10.2757 1.1084 26 6 -3.7962 -10.8656 0.4204 27 7 -3.9024 -11.8695 -0.4402 28 6 -2.8444 -12.4085 -1.0072 29 6 -1.5631 -11.9545 -0.7332 30 6 -1.3886 -10.9103 0.1550 31 6 -2.5256 -10.3533 0.7453 32 1 -0.4850 0.8401 -0.0004 33 1 1.4257 -4.1187 -1.0378 34 1 2.9122 -3.7779 -0.0993 35 1 -0.3520 -1.7058 1.2749 36 1 -0.7310 -2.7497 -0.1299 37 1 0.0078 -6.4397 2.6731 38 1 -0.8070 -9.0050 2.5360 39 1 -2.0806 -8.0236 3.2996 40 1 -4.5717 -8.4973 2.5588 41 1 -2.9771 -13.2242 -1.7026 42 1 -0.7093 -12.4126 -1.2102 43 1 -0.4022 -10.5363 0.3865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962895321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:49 Heat of formation + Delta-G solvation = 101.167765 kcal Electronic energy + Delta-G solvation = -26064.905738 eV Core-core repulsion = 22305.636638 eV Total energy + Delta-G solvation = -3759.269100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74594 -39.64820 -38.26415 -37.86627 -34.40829 -33.65717 -32.63677 -31.55777 -30.19149 -29.76656 -27.54173 -27.14491 -25.49847 -23.87525 -22.74549 -22.21159 -20.66413 -20.36054 -19.39581 -19.20702 -18.40229 -17.06816 -16.92000 -16.82105 -16.29947 -16.06867 -15.14655 -15.02356 -14.79785 -14.70757 -14.00878 -13.59770 -13.50451 -13.22528 -13.19555 -12.96224 -12.74614 -12.57904 -12.41752 -12.21580 -11.78394 -11.49210 -11.38275 -10.99266 -10.82621 -10.52962 -10.38906 -10.19929 -10.15934 -9.76526 -9.71988 -9.57320 -9.19485 -8.74099 -8.62059 -8.21432 -8.16110 -6.86640 -5.79402 -3.13934 0.82988 1.21484 2.34139 2.59193 2.70204 3.28158 3.38674 3.43329 3.45109 3.75520 4.26209 4.30634 4.43590 4.46176 4.49321 4.75891 4.86145 4.92446 5.05274 5.12151 5.19490 5.22613 5.37359 5.37984 5.39554 5.55873 5.58552 5.74139 5.83579 5.89746 6.08714 6.17234 6.21331 6.27427 6.32241 6.53694 6.69032 6.75953 6.84188 6.90184 7.08324 7.37584 7.54375 7.63670 7.71862 7.83770 8.20818 8.36558 9.10956 9.73710 10.50773 11.34808 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.027947 B = 0.002112 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.646482 B =13254.158404 C =13538.366475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.154 3.846 11 C -0.179 4.179 12 H 0.101 0.899 13 C -0.180 4.180 14 H 0.102 0.898 15 C 0.184 3.816 16 C 0.094 3.906 17 H 0.132 0.868 18 N -0.700 5.700 19 C 0.512 3.488 20 O -0.527 6.527 21 C -0.065 4.065 22 C -0.144 4.144 23 C 0.076 3.924 24 N -0.580 5.580 25 H 0.420 0.580 26 C 0.285 3.715 27 N -0.502 5.502 28 C 0.134 3.866 29 C -0.203 4.203 30 C -0.025 4.025 31 C -0.133 4.133 32 H 0.255 0.745 33 H 0.027 0.973 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.025 0.975 37 H 0.398 0.602 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.178 0.822 41 H 0.159 0.841 42 H 0.136 0.864 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 -24.115 7.280 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.214 1.214 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.028 3.972 11 C -0.200 4.200 12 H 0.119 0.881 13 C -0.202 4.202 14 H 0.120 0.880 15 C 0.058 3.942 16 C -0.012 4.012 17 H 0.150 0.850 18 N -0.349 5.349 19 C 0.298 3.702 20 O -0.403 6.403 21 C -0.105 4.105 22 C -0.152 4.152 23 C -0.050 4.050 24 N -0.186 5.186 25 H 0.257 0.743 26 C 0.052 3.948 27 N -0.215 5.215 28 C -0.031 4.031 29 C -0.225 4.225 30 C -0.052 4.052 31 C -0.140 4.140 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.043 0.957 37 H 0.231 0.769 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.195 0.805 41 H 0.176 0.824 42 H 0.154 0.846 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.891 -24.021 6.318 25.776 hybrid contribution 1.076 1.106 0.678 1.685 sum -5.814 -22.915 6.996 24.654 Atomic orbital electron populations 1.69898 1.05060 1.25459 1.55683 1.24910 0.95652 0.97992 1.01764 0.86131 0.78637 0.83150 0.77765 1.21363 1.20657 1.21552 1.18970 0.90723 0.82274 1.43581 0.90561 1.45167 1.12879 0.99944 1.73697 1.21135 0.97096 0.85953 0.93050 1.24308 0.90661 1.02018 1.03058 0.88144 1.25316 1.02391 0.92304 1.00186 0.87957 1.20964 0.86799 0.92499 0.93905 1.22497 0.99107 0.84447 0.95196 0.85046 1.45392 1.41684 1.26237 1.21623 1.20607 0.79101 0.82919 0.87608 1.90735 1.51137 1.75109 1.23282 1.19948 0.98569 0.93948 0.98071 1.19457 0.93105 0.99653 1.02967 1.21626 0.92178 0.93714 0.97478 1.41459 1.08722 1.30185 1.38249 0.74264 1.18349 0.87586 0.93703 0.95140 1.66445 1.35223 1.10084 1.09766 1.22406 0.87034 0.97460 0.96244 1.21838 0.98835 0.99927 1.01874 1.20943 0.97668 0.93349 0.93217 1.19658 0.93584 0.99279 1.01466 0.93517 0.95554 0.93029 0.89084 0.95717 0.76867 0.88164 0.87917 0.80477 0.82390 0.84599 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.92 10.84 55.49 0.60 -26.32 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.33 10.36 -15.06 -0.16 -6.49 16 8 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 9 N -0.59 -15.26 3.38 -169.11 -0.57 -15.83 16 10 C 0.15 3.25 7.04 -2.41 -0.02 3.23 16 11 C -0.18 -3.11 6.91 -89.21 -0.62 -3.73 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 13 C -0.18 -3.39 7.22 -87.19 -0.63 -4.02 16 14 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 15 C 0.18 4.47 5.71 -2.62 -0.01 4.45 16 16 C 0.09 1.55 6.20 -65.69 -0.41 1.15 16 17 H 0.13 2.54 7.40 -51.93 -0.38 2.15 16 18 N -0.70 -8.75 5.57 -51.65 -0.29 -9.04 16 19 C 0.51 6.71 7.82 -10.99 -0.09 6.63 16 20 O -0.53 -9.53 15.60 5.56 0.09 -9.45 16 21 C -0.06 -0.56 6.23 -29.04 -0.18 -0.74 16 22 C -0.14 -1.54 4.81 -102.76 -0.49 -2.03 16 23 C 0.08 0.69 11.74 -16.69 -0.20 0.49 16 24 N -0.58 -5.58 6.05 -12.14 -0.07 -5.65 16 25 H 0.42 2.87 8.96 -40.82 -0.37 2.50 16 26 C 0.29 3.53 8.43 -155.69 -1.31 2.22 16 27 N -0.50 -6.18 10.39 -12.27 -0.13 -6.31 16 28 C 0.13 1.32 11.15 -17.50 -0.20 1.13 16 29 C -0.20 -1.88 10.10 -39.44 -0.40 -2.27 16 30 C -0.03 -0.27 10.22 -39.06 -0.40 -0.67 16 31 C -0.13 -1.62 6.37 -105.11 -0.67 -2.29 16 32 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.09 2.45 6.50 -51.93 -0.34 2.11 16 36 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.40 3.65 8.83 -40.82 -0.36 3.29 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -36.46 365.48 -11.40 -47.86 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.64 Total: 5.57 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -5.87 Total: -3.21 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.46 Total: -63.15 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.46 -11.40 -47.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962895321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.030 kcal (2) G-P(sol) polarization free energy of solvation -36.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds