Wall clock time and date at job start Tue Mar 31 2020 14:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48501 * 109.47072 * 264.99271 * 3 2 1 5 5 H 1.48506 * 109.47120 * 144.99642 * 3 2 1 6 6 H 1.48494 * 109.47321 * 24.99120 * 3 2 1 7 7 C 1.38818 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99271 * 171.33153 * 7 2 1 9 9 N 1.36936 * 120.00148 * 351.33316 * 7 2 1 10 10 C 1.48140 * 127.83547 * 164.76416 * 9 7 2 11 11 C 1.54390 * 104.61976 * 140.41411 * 10 9 7 12 12 H 1.09002 * 117.62138 * 244.78623 * 11 10 9 13 13 C 1.54292 * 104.95779 * 23.86532 * 11 10 9 14 14 H 1.08999 * 121.81620 * 222.18120 * 13 11 10 15 15 C 1.48141 * 127.83704 * 344.44339 * 9 7 2 16 16 C 1.53001 * 118.12269 * 89.20474 * 11 10 9 17 17 H 1.08992 * 117.44532 * 16.10890 * 16 11 10 18 18 N 1.46502 * 117.44172 * 160.81356 * 16 11 10 19 19 C 1.34776 * 120.00055 * 204.99389 * 18 16 11 20 20 O 1.21281 * 119.99616 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00023 * 179.97438 * 19 18 16 22 22 C 1.50696 * 109.46778 * 180.02562 * 21 19 18 23 23 C 1.34230 * 126.56721 * 264.68798 * 22 21 19 24 24 N 1.36917 * 109.91333 * 179.89483 * 23 22 21 25 25 H 0.97003 * 124.99270 * 180.13520 * 24 23 22 26 26 C 1.37420 * 110.02647 * 0.38686 * 24 23 22 27 27 N 1.32653 * 133.20295 * 179.79488 * 26 24 23 28 28 C 1.31584 * 121.68058 * 179.97438 * 27 26 24 29 29 C 1.38668 * 121.57817 * 0.02562 * 28 27 26 30 30 C 1.38190 * 119.41102 * 359.94131 * 29 28 27 31 31 C 1.39695 * 118.04180 * 0.07137 * 30 29 28 32 32 H 0.97004 * 119.99858 * 0.02562 * 1 2 3 33 33 H 1.09001 * 110.40970 * 259.19754 * 10 9 7 34 34 H 1.09003 * 110.41393 * 21.63084 * 10 9 7 35 35 H 1.09000 * 110.41049 * 338.36644 * 15 9 7 36 36 H 1.08998 * 110.40933 * 100.80550 * 15 9 7 37 37 H 0.96997 * 119.99683 * 25.00454 * 18 16 11 38 38 H 1.08992 * 109.47585 * 300.00835 * 21 19 18 39 39 H 1.08999 * 109.46681 * 60.01270 * 21 19 18 40 40 H 1.07996 * 125.04518 * 0.03561 * 23 22 21 41 41 H 1.07999 * 119.21368 * 180.02562 * 28 27 26 42 42 H 1.08001 * 120.28785 * 179.97438 * 29 28 27 43 43 H 1.08005 * 120.97955 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6035 1.9853 -1.3947 5 1 3.4909 1.4729 0.8032 6 1 1.3988 2.6809 0.5915 7 6 2.0102 -1.2022 0.0005 8 1 3.0809 -1.2076 -0.1404 9 7 1.3372 -2.3813 0.1798 10 6 1.8225 -3.7547 -0.0900 11 6 1.2760 -4.5983 1.0818 12 1 1.9997 -5.0437 1.7645 13 6 0.0471 -3.8189 1.5945 14 1 -0.1523 -3.6960 2.6590 15 6 -0.0390 -2.5731 0.6936 16 6 -0.1073 -5.2339 0.9293 17 1 -0.5251 -5.2928 -0.0756 18 7 -0.4380 -6.3522 1.8162 19 6 -1.3618 -7.2591 1.4414 20 8 -1.9190 -7.1497 0.3697 21 6 -1.7016 -8.4097 2.3534 22 6 -2.7540 -9.2712 1.7044 23 6 -4.0799 -9.1973 1.8996 24 7 -4.7168 -10.1389 1.1365 25 1 -5.6768 -10.2757 1.1084 26 6 -3.7962 -10.8656 0.4204 27 7 -3.9024 -11.8695 -0.4402 28 6 -2.8444 -12.4085 -1.0072 29 6 -1.5631 -11.9545 -0.7332 30 6 -1.3886 -10.9103 0.1550 31 6 -2.5256 -10.3533 0.7453 32 1 -0.4850 0.8401 -0.0004 33 1 1.4257 -4.1187 -1.0378 34 1 2.9122 -3.7779 -0.0993 35 1 -0.3520 -1.7058 1.2749 36 1 -0.7310 -2.7497 -0.1299 37 1 0.0078 -6.4397 2.6731 38 1 -0.8070 -9.0050 2.5360 39 1 -2.0806 -8.0236 3.2996 40 1 -4.5717 -8.4973 2.5588 41 1 -2.9771 -13.2242 -1.7026 42 1 -0.7093 -12.4126 -1.2102 43 1 -0.4022 -10.5363 0.3865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962895321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:49 Heat of formation + Delta-G solvation = 76.444980 kcal Electronic energy + Delta-G solvation = -26065.977799 eV Core-core repulsion = 22305.636638 eV Total energy + Delta-G solvation = -3760.341160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.46760 -40.88210 -39.65345 -38.66262 -35.98499 -34.47361 -34.21376 -32.51758 -31.79393 -30.52011 -28.93873 -28.43221 -27.30918 -24.60782 -23.76727 -23.46646 -21.99868 -21.77861 -20.80527 -20.21923 -19.15917 -18.85847 -17.95624 -17.68294 -17.47823 -16.93273 -16.72437 -15.95667 -15.92451 -15.64394 -15.49734 -15.11772 -14.71273 -14.59789 -14.21463 -13.94549 -13.78280 -13.64982 -13.38040 -13.24844 -13.15320 -13.09163 -12.86635 -12.70144 -12.37694 -12.11200 -12.03968 -11.84831 -11.60970 -11.32681 -10.91768 -10.79678 -10.68630 -10.34606 -9.55339 -9.36327 -8.93033 -8.87939 -7.91646 -5.28972 0.09855 0.46019 1.46727 1.48785 1.57258 1.57984 1.67825 1.92812 2.23935 2.49410 2.84719 2.97957 3.29336 3.58717 3.63645 3.73122 3.83045 3.85322 3.97105 4.02173 4.12541 4.17168 4.26318 4.40231 4.43355 4.56273 4.57364 4.63414 4.74728 4.86542 4.90481 4.97658 5.00385 5.07143 5.30994 5.37303 5.43933 5.47392 5.51295 5.61357 5.62426 5.65443 6.04246 6.16550 6.44429 6.67939 6.99859 7.09548 7.39484 7.67233 8.45686 9.22194 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.027947 B = 0.002112 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.646482 B =13254.158404 C =13538.366475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.983 3.017 4 H -0.284 1.284 5 H -0.266 1.266 6 H -0.293 1.293 7 C -0.241 4.241 8 H 0.084 0.916 9 N -0.618 5.618 10 C 0.145 3.855 11 C -0.156 4.156 12 H 0.140 0.860 13 C -0.187 4.187 14 H 0.126 0.874 15 C 0.188 3.812 16 C 0.117 3.883 17 H 0.100 0.900 18 N -0.683 5.683 19 C 0.512 3.488 20 O -0.583 6.583 21 C -0.051 4.051 22 C -0.171 4.171 23 C 0.082 3.918 24 N -0.577 5.577 25 H 0.429 0.571 26 C 0.251 3.749 27 N -0.528 5.528 28 C 0.122 3.878 29 C -0.201 4.201 30 C -0.044 4.044 31 C -0.157 4.157 32 H 0.250 0.750 33 H 0.016 0.984 34 H 0.066 0.934 35 H 0.057 0.943 36 H -0.011 1.011 37 H 0.420 0.580 38 H 0.127 0.873 39 H 0.141 0.859 40 H 0.213 0.787 41 H 0.187 0.813 42 H 0.165 0.835 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 -25.652 9.310 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.811 3.189 4 H -0.211 1.211 5 H -0.191 1.191 6 H -0.220 1.220 7 C -0.369 4.369 8 H 0.102 0.898 9 N -0.342 5.342 10 C 0.020 3.980 11 C -0.176 4.176 12 H 0.158 0.842 13 C -0.208 4.208 14 H 0.144 0.856 15 C 0.062 3.938 16 C 0.009 3.991 17 H 0.118 0.882 18 N -0.334 5.334 19 C 0.300 3.700 20 O -0.461 6.461 21 C -0.090 4.090 22 C -0.179 4.179 23 C -0.045 4.045 24 N -0.184 5.184 25 H 0.268 0.732 26 C 0.019 3.981 27 N -0.242 5.242 28 C -0.043 4.043 29 C -0.222 4.222 30 C -0.071 4.071 31 C -0.164 4.164 32 H 0.059 0.941 33 H 0.033 0.967 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.007 0.993 37 H 0.258 0.742 38 H 0.145 0.855 39 H 0.159 0.841 40 H 0.229 0.771 41 H 0.204 0.796 42 H 0.183 0.817 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.394 -25.611 8.391 27.485 hybrid contribution 0.579 1.493 -0.067 1.603 sum -4.815 -24.118 8.324 25.964 Atomic orbital electron populations 1.70114 1.06677 1.25784 1.57199 1.25805 0.96507 1.01498 1.02092 0.85041 0.77628 0.78533 0.77744 1.21109 1.19090 1.21951 1.19404 0.91376 0.83437 1.42706 0.89798 1.45489 1.13261 1.01200 1.74247 1.21299 0.98038 0.84485 0.94209 1.24198 0.91058 1.00941 1.01429 0.84228 1.24989 1.04573 0.91023 1.00219 0.85579 1.20674 0.85877 0.94000 0.93218 1.21965 0.98148 0.84568 0.94436 0.88187 1.45198 1.41753 1.24608 1.21858 1.21500 0.77762 0.83356 0.87341 1.90729 1.53033 1.76422 1.25965 1.19996 0.99350 0.91851 0.97837 1.19782 0.94292 1.00132 1.03700 1.22274 0.92138 0.93206 0.96861 1.41580 1.09146 1.29911 1.37790 0.73166 1.18736 0.88658 0.94577 0.96167 1.66477 1.36474 1.10728 1.10486 1.23000 0.87044 0.97966 0.96340 1.22199 0.99591 0.99274 1.01128 1.21286 0.98098 0.93958 0.93732 1.20070 0.93970 1.00124 1.02228 0.94133 0.96666 0.91594 0.92423 0.99339 0.74207 0.85541 0.84095 0.77077 0.79630 0.81719 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.05 10.84 21.65 0.23 -57.81 16 2 C -0.07 -3.76 5.40 84.86 0.46 -3.30 16 3 Si 0.98 45.55 29.56 68.60 2.03 47.58 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.24 -13.56 10.36 84.03 0.87 -12.69 16 8 H 0.08 4.47 7.84 -2.91 -0.02 4.44 16 9 N -0.62 -32.34 3.38 -688.94 -2.33 -34.67 16 10 C 0.15 6.04 7.04 86.54 0.61 6.65 16 11 C -0.16 -5.04 6.91 -9.88 -0.07 -5.11 16 12 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 13 C -0.19 -6.83 7.22 -8.57 -0.06 -6.89 16 14 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 15 C 0.19 9.49 5.71 86.40 0.49 9.98 16 16 C 0.12 3.71 6.20 46.44 0.29 4.00 16 17 H 0.10 3.94 7.40 -2.39 -0.02 3.92 16 18 N -0.68 -14.94 5.57 -435.71 -2.43 -17.36 16 19 C 0.51 12.22 7.82 87.66 0.69 12.91 16 20 O -0.58 -20.85 15.60 -3.03 -0.05 -20.90 16 21 C -0.05 -0.69 6.23 29.10 0.18 -0.51 16 22 C -0.17 -3.33 4.81 -18.66 -0.09 -3.42 16 23 C 0.08 1.32 11.74 82.98 0.97 2.30 16 24 N -0.58 -10.75 6.05 -192.34 -1.16 -11.91 16 25 H 0.43 5.69 8.96 -92.71 -0.83 4.86 16 26 C 0.25 6.20 8.43 133.93 1.13 7.33 16 27 N -0.53 -13.02 10.39 -192.74 -2.00 -15.02 16 28 C 0.12 2.31 11.15 84.83 0.95 3.26 16 29 C -0.20 -3.46 10.10 22.36 0.23 -3.23 16 30 C -0.04 -0.91 10.22 22.61 0.23 -0.67 16 31 C -0.16 -3.70 6.37 -20.18 -0.13 -3.83 16 32 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 33 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.06 3.26 6.50 -2.39 -0.02 3.24 16 36 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H 0.42 5.67 8.83 -92.71 -0.82 4.86 16 38 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 43 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -84.70 365.48 0.45 -84.25 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.59 Total: 19.07 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 6.74 Total: 6.78 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -7.69 Total: -136.78 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -84.70 0.45 -84.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962895321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.696 kcal (2) G-P(sol) polarization free energy of solvation -84.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds